Wall clock time and date at job start Wed Apr 1 2020 00:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34753 * 126.44126 * 60.02742 * 4 2 1 6 6 C 1.33974 * 107.75535 * 179.97438 * 5 4 2 7 7 N 1.30258 * 108.75782 * 359.97438 * 6 5 4 8 8 C 1.34330 * 126.44520 * 239.71420 * 4 2 1 9 9 C 1.50698 * 126.16016 * 359.97438 * 8 4 2 10 10 N 1.46895 * 109.47270 * 90.00368 * 9 8 4 11 11 C 1.46906 * 111.00241 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.46964 * 324.99714 * 11 10 9 13 13 C 1.52996 * 109.46916 * 84.99742 * 11 10 9 14 14 C 1.53005 * 109.47106 * 204.99790 * 11 10 9 15 15 N 1.46505 * 109.47079 * 54.99999 * 14 11 10 16 16 C 1.34772 * 120.00001 * 179.97438 * 15 14 11 17 17 O 1.21280 * 119.99823 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00139 * 180.02562 * 16 15 14 19 19 S 1.80994 * 109.47330 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00190 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99992 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00158 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99669 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47227 * 60.00060 * 24 22 20 26 26 H 1.48501 * 109.47423 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47381 * 300.00314 * 24 22 20 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.07987 * 125.61877 * 180.02562 * 6 5 4 36 36 H 1.09009 * 109.46880 * 209.99849 * 9 8 4 37 37 H 1.09000 * 109.47704 * 329.99867 * 9 8 4 38 38 H 1.00901 * 111.00252 * 56.04194 * 10 9 8 39 39 H 1.08991 * 109.47281 * 299.99757 * 13 11 10 40 40 H 1.09003 * 109.46922 * 60.00666 * 13 11 10 41 41 H 1.09006 * 109.46516 * 179.97438 * 13 11 10 42 42 H 1.08994 * 109.47007 * 174.99730 * 14 11 10 43 43 H 1.09000 * 109.47215 * 294.99914 * 14 11 10 44 44 H 0.97000 * 119.99775 * 359.97438 * 15 14 11 45 45 H 1.09004 * 109.46909 * 299.99796 * 18 16 15 46 46 H 1.09000 * 109.47154 * 59.99843 * 18 16 15 47 47 H 0.97003 * 119.99392 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7885 -0.3646 -2.5099 6 6 2.4142 -1.2488 -3.2984 7 7 3.0290 -2.1179 -2.5478 8 6 2.8121 -1.8038 -1.2583 9 6 3.3461 -2.5458 -0.0602 10 7 2.3922 -3.5911 0.3336 11 6 2.8810 -4.3373 1.5008 12 1 3.9659 -4.4264 1.4467 13 6 2.4935 -3.5934 2.7804 14 6 2.2545 -5.7331 1.5127 15 7 2.5254 -6.4009 0.2372 16 6 2.0673 -7.6495 0.0196 17 8 1.4311 -8.2205 0.8799 18 6 2.3464 -8.3367 -1.2923 19 16 1.6052 -9.9878 -1.2783 20 6 2.0715 -10.5462 -2.8831 21 1 2.6473 -9.9033 -3.5323 22 6 1.6996 -11.8126 -3.3125 23 7 0.9982 -12.5963 -2.5209 24 14 2.1945 -12.4048 -5.0136 25 1 3.6753 -12.4087 -5.1250 26 1 1.6779 -13.7803 -5.2287 27 1 1.6233 -11.4960 -6.0398 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 2.4101 -1.2416 -4.3782 36 1 4.3027 -3.0034 -0.3130 37 1 3.4839 -1.8493 0.7668 38 1 2.1982 -4.2126 -0.4372 39 1 2.9398 -2.5991 2.7719 40 1 1.4085 -3.5043 2.8345 41 1 2.8558 -4.1473 3.6465 42 1 2.6837 -6.3170 2.3269 43 1 1.1774 -5.6468 1.6561 44 1 3.0345 -5.9443 -0.4507 45 1 1.9172 -7.7530 -2.1067 46 1 3.4236 -8.4227 -1.4354 47 1 0.7380 -13.4813 -2.8212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491399538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:32 Heat of formation + Delta-G solvation = -26.313000 kcal Electronic energy + Delta-G solvation = -26900.977214 eV Core-core repulsion = 23018.367803 eV Total energy + Delta-G solvation = -3882.609410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.65839 -39.42699 -37.70539 -36.11774 -35.34377 -33.69966 -32.40847 -31.72777 -29.55385 -29.21496 -27.61854 -26.31450 -25.52626 -25.07232 -23.79838 -21.67323 -20.89227 -20.53347 -20.35387 -17.98311 -17.51757 -16.93374 -16.52106 -16.15925 -16.14075 -15.67509 -15.42687 -14.97383 -14.78585 -14.75842 -14.46908 -14.03911 -13.61206 -13.59212 -13.17401 -13.06254 -12.89854 -12.65838 -12.64715 -12.61294 -12.17060 -12.03730 -11.94813 -11.73972 -11.68984 -11.43009 -11.40209 -11.15063 -11.02354 -11.02119 -10.74846 -10.71169 -9.80769 -9.40828 -9.04897 -9.04005 -8.90925 -8.78567 -8.22251 -6.47964 -6.19637 -3.90065 1.17106 2.32899 2.45682 3.03207 3.10345 3.25124 3.28748 3.32333 3.67403 3.77155 4.01212 4.21225 4.22428 4.36525 4.46762 4.56171 4.62455 4.82026 4.92520 5.01652 5.11148 5.14711 5.15339 5.16198 5.17497 5.33129 5.39979 5.46256 5.47662 5.51080 5.54451 5.60757 5.66961 5.69619 5.80040 5.84623 5.86511 5.91386 5.96615 6.02685 6.16391 6.55889 6.63348 6.99149 7.44217 7.61205 7.64775 8.37167 8.60389 9.25532 10.87739 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.002223 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.462766 B =12589.860114 C =14056.578015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.007 4.007 3 C -0.150 4.150 4 C -0.012 4.012 5 O -0.202 6.202 6 C 0.166 3.834 7 N -0.479 5.479 8 C -0.017 4.017 9 C 0.141 3.859 10 N -0.681 5.681 11 C 0.073 3.927 12 H 0.053 0.947 13 C -0.138 4.138 14 C 0.119 3.881 15 N -0.743 5.743 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.249 0.751 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.349 0.651 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.394 0.606 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 30.802 5.843 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 C -0.207 4.207 4 C -0.066 4.066 5 O -0.088 6.088 6 C -0.060 4.060 7 N -0.208 5.208 8 C -0.137 4.137 9 C 0.012 3.988 10 N -0.316 5.316 11 C -0.036 4.036 12 H 0.071 0.929 13 C -0.196 4.196 14 C -0.005 4.005 15 N -0.398 5.398 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.170 0.830 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.228 0.772 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.182 29.603 7.454 30.692 hybrid contribution 1.670 0.463 -2.959 3.429 sum 4.853 30.066 4.495 30.785 Atomic orbital electron populations 1.21844 0.93159 1.03056 1.02383 1.19773 0.96842 0.95458 0.90495 1.21903 1.01372 0.94739 1.02733 1.23191 1.01117 0.98445 0.83888 1.84419 1.59097 1.48789 1.16535 1.27979 0.93473 0.85695 0.98897 1.70335 1.22211 1.26248 1.01993 1.21256 1.02646 0.97096 0.92709 1.20176 0.93280 0.93699 0.91628 1.60578 1.44925 1.16691 1.09410 1.21806 0.97680 0.92062 0.92095 0.92924 1.21737 1.02782 0.99785 0.95284 1.21502 1.01530 0.90806 0.86710 1.46062 1.58803 1.16901 1.18078 1.20286 0.78253 0.80425 0.89041 1.90704 1.38254 1.64232 1.45708 1.23535 1.05373 1.04984 0.96554 1.85374 1.70656 1.05029 1.22188 1.22830 1.40782 1.03601 1.01166 0.90986 1.24993 0.94694 0.95566 0.98349 1.70013 1.35184 1.09046 1.36070 0.86224 0.78915 0.77834 0.82523 1.19943 1.20814 1.19940 0.92374 0.91587 0.91528 0.87615 0.92151 0.91384 0.92330 0.73551 0.93221 0.89377 0.82986 0.92464 0.91435 0.91984 0.90798 0.90611 0.77202 0.89209 0.89274 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.18 37.16 0.34 -0.60 16 2 C -0.01 -0.05 3.27 -91.77 -0.30 -0.35 16 3 C -0.15 -0.78 9.18 37.16 0.34 -0.44 16 4 C -0.01 -0.11 5.89 -35.69 -0.21 -0.32 16 5 O -0.20 -1.86 10.78 5.34 0.06 -1.80 16 6 C 0.17 1.41 13.23 52.10 0.69 2.10 16 7 N -0.48 -5.28 11.29 -11.18 -0.13 -5.41 16 8 C -0.02 -0.17 6.62 -82.81 -0.55 -0.72 16 9 C 0.14 1.18 5.66 -4.98 -0.03 1.16 16 10 N -0.68 -6.18 6.29 -107.99 -0.68 -6.86 16 11 C 0.07 0.62 2.81 -67.71 -0.19 0.43 16 12 H 0.05 0.42 7.80 -51.93 -0.40 0.02 16 13 C -0.14 -0.95 9.41 37.16 0.35 -0.60 16 14 C 0.12 1.38 5.31 -4.04 -0.02 1.36 16 15 N -0.74 -10.13 4.99 -60.29 -0.30 -10.44 16 16 C 0.53 10.16 7.85 -10.99 -0.09 10.07 16 17 O -0.52 -11.86 15.86 5.56 0.09 -11.77 16 18 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 24 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.61 6.82 -51.93 -0.35 0.26 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.25 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.05 0.43 8.06 -51.92 -0.42 0.02 16 37 H 0.09 0.58 6.46 -51.93 -0.34 0.25 16 38 H 0.35 3.73 6.70 -39.29 -0.26 3.47 16 39 H 0.06 0.33 7.45 -51.93 -0.39 -0.06 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.39 4.51 7.37 -40.82 -0.30 4.21 16 45 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 46 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -36.11 405.98 -8.09 -44.20 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.50 Total: 2.89 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.76 Total: -4.03 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.37 Total: -48.40 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.15 Total: -13.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.11 -8.09 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491399538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.884 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds