Wall clock time and date at job start Wed Apr 1 2020 00:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34753 * 126.44126 * 60.02742 * 4 2 1 6 6 C 1.33974 * 107.75535 * 179.97438 * 5 4 2 7 7 N 1.30258 * 108.75782 * 359.97438 * 6 5 4 8 8 C 1.34330 * 126.44520 * 239.71420 * 4 2 1 9 9 C 1.50698 * 126.16016 * 359.97438 * 8 4 2 10 10 N 1.46895 * 109.47270 * 90.00368 * 9 8 4 11 11 C 1.46906 * 111.00241 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.46964 * 324.99714 * 11 10 9 13 13 C 1.52996 * 109.46916 * 84.99742 * 11 10 9 14 14 C 1.53005 * 109.47106 * 204.99790 * 11 10 9 15 15 N 1.46505 * 109.47079 * 54.99999 * 14 11 10 16 16 C 1.34772 * 120.00001 * 179.97438 * 15 14 11 17 17 O 1.21280 * 119.99823 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00139 * 180.02562 * 16 15 14 19 19 S 1.80994 * 109.47330 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00190 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99992 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00158 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99669 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47227 * 60.00060 * 24 22 20 26 26 H 1.48501 * 109.47423 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47381 * 300.00314 * 24 22 20 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.07987 * 125.61877 * 180.02562 * 6 5 4 36 36 H 1.09009 * 109.46880 * 209.99849 * 9 8 4 37 37 H 1.09000 * 109.47704 * 329.99867 * 9 8 4 38 38 H 1.00901 * 111.00252 * 56.04194 * 10 9 8 39 39 H 1.08991 * 109.47281 * 299.99757 * 13 11 10 40 40 H 1.09003 * 109.46922 * 60.00666 * 13 11 10 41 41 H 1.09006 * 109.46516 * 179.97438 * 13 11 10 42 42 H 1.08994 * 109.47007 * 174.99730 * 14 11 10 43 43 H 1.09000 * 109.47215 * 294.99914 * 14 11 10 44 44 H 0.97000 * 119.99775 * 359.97438 * 15 14 11 45 45 H 1.09004 * 109.46909 * 299.99796 * 18 16 15 46 46 H 1.09000 * 109.47154 * 59.99843 * 18 16 15 47 47 H 0.97003 * 119.99392 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7885 -0.3646 -2.5099 6 6 2.4142 -1.2488 -3.2984 7 7 3.0290 -2.1179 -2.5478 8 6 2.8121 -1.8038 -1.2583 9 6 3.3461 -2.5458 -0.0602 10 7 2.3922 -3.5911 0.3336 11 6 2.8810 -4.3373 1.5008 12 1 3.9659 -4.4264 1.4467 13 6 2.4935 -3.5934 2.7804 14 6 2.2545 -5.7331 1.5127 15 7 2.5254 -6.4009 0.2372 16 6 2.0673 -7.6495 0.0196 17 8 1.4311 -8.2205 0.8799 18 6 2.3464 -8.3367 -1.2923 19 16 1.6052 -9.9878 -1.2783 20 6 2.0715 -10.5462 -2.8831 21 1 2.6473 -9.9033 -3.5323 22 6 1.6996 -11.8126 -3.3125 23 7 0.9982 -12.5963 -2.5209 24 14 2.1945 -12.4048 -5.0136 25 1 3.6753 -12.4087 -5.1250 26 1 1.6779 -13.7803 -5.2287 27 1 1.6233 -11.4960 -6.0398 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 2.4101 -1.2416 -4.3782 36 1 4.3027 -3.0034 -0.3130 37 1 3.4839 -1.8493 0.7668 38 1 2.1982 -4.2126 -0.4372 39 1 2.9398 -2.5991 2.7719 40 1 1.4085 -3.5043 2.8345 41 1 2.8558 -4.1473 3.6465 42 1 2.6837 -6.3170 2.3269 43 1 1.1774 -5.6468 1.6561 44 1 3.0345 -5.9443 -0.4507 45 1 1.9172 -7.7530 -2.1067 46 1 3.4236 -8.4227 -1.4354 47 1 0.7380 -13.4813 -2.8212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491399538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:31 Heat of formation + Delta-G solvation = -54.531057 kcal Electronic energy + Delta-G solvation = -26902.200840 eV Core-core repulsion = 23018.367803 eV Total energy + Delta-G solvation = -3883.833037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.31082 -40.79337 -38.64568 -36.65840 -36.12567 -34.82687 -34.59137 -32.56944 -30.90014 -29.98064 -28.06127 -27.75463 -27.04838 -26.01120 -24.38150 -22.33457 -21.84315 -21.65272 -21.08253 -19.87547 -18.35470 -17.82582 -17.62267 -17.38942 -17.04687 -16.88930 -16.50763 -16.16381 -16.00663 -15.87057 -15.60334 -15.06132 -14.71180 -14.54374 -14.25230 -14.12541 -14.04593 -13.64443 -13.37232 -13.19504 -13.18302 -13.07734 -12.90627 -12.87180 -12.64037 -12.59880 -12.54509 -12.18672 -12.12898 -11.94113 -11.84512 -11.73280 -11.38435 -11.14133 -11.01199 -10.30793 -10.20052 -9.69117 -9.46976 -8.68357 -8.35655 -6.14026 0.53458 1.24740 1.42953 1.44877 1.55017 1.56195 1.65134 1.88131 2.21627 2.26906 2.98162 3.08398 3.29779 3.39347 3.64791 3.67285 3.80587 3.92723 3.99634 4.15260 4.16876 4.24997 4.30534 4.39115 4.46916 4.48537 4.59130 4.64208 4.75815 4.79644 4.84378 4.92161 4.95485 4.97473 5.01627 5.05741 5.18233 5.30906 5.32931 5.35801 5.37878 5.40304 5.47556 5.94792 6.18369 6.18618 6.36423 6.78311 7.05289 7.16036 8.73330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.002223 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.462766 B =12589.860114 C =14056.578015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 C -0.145 4.145 4 C -0.017 4.017 5 O -0.211 6.211 6 C 0.169 3.831 7 N -0.516 5.516 8 C -0.038 4.038 9 C 0.145 3.855 10 N -0.683 5.683 11 C 0.084 3.916 12 H 0.065 0.935 13 C -0.134 4.134 14 C 0.118 3.882 15 N -0.717 5.717 16 C 0.536 3.464 17 O -0.561 6.561 18 C -0.131 4.131 19 S -0.147 6.147 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.277 1.277 27 H -0.263 1.263 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.283 0.717 36 H 0.046 0.954 37 H 0.108 0.892 38 H 0.338 0.662 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.408 0.592 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 33.027 5.159 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 C -0.203 4.203 4 C -0.071 4.071 5 O -0.097 6.097 6 C -0.058 4.058 7 N -0.245 5.245 8 C -0.157 4.157 9 C 0.017 3.983 10 N -0.317 5.317 11 C -0.025 4.025 12 H 0.083 0.917 13 C -0.192 4.192 14 C -0.006 4.006 15 N -0.371 5.371 16 C 0.322 3.678 17 O -0.439 6.439 18 C -0.282 4.282 19 S 0.080 5.920 20 C -0.696 4.696 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.202 1.202 27 H -0.187 1.187 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.299 0.701 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.158 0.842 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.245 0.755 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.531 31.891 6.781 32.917 hybrid contribution 1.269 -0.091 -2.715 2.999 sum 5.801 31.800 4.066 32.580 Atomic orbital electron populations 1.21811 0.93226 1.02090 1.02962 1.19901 0.96698 0.96153 0.89744 1.21871 1.01341 0.93837 1.03220 1.23644 1.00707 0.98363 0.84402 1.84432 1.59295 1.49095 1.16897 1.28826 0.92107 0.84690 1.00143 1.70321 1.23711 1.27636 1.02869 1.21529 1.03456 0.97797 0.92878 1.20226 0.92607 0.93618 0.91890 1.60635 1.45446 1.16592 1.09042 1.21773 0.97931 0.90054 0.92773 0.91723 1.21730 1.02497 1.00586 0.94425 1.21666 1.01143 0.92485 0.85266 1.45808 1.57097 1.14976 1.19241 1.20006 0.78172 0.81714 0.87899 1.90692 1.40666 1.65741 1.46807 1.23374 1.05788 1.00703 0.98336 1.85529 1.72451 1.10816 1.23159 1.23164 1.40966 1.04253 1.01218 0.90060 1.26138 0.94353 0.95599 1.03076 1.70178 1.36479 1.09532 1.38469 0.85004 0.79030 0.77387 0.76575 1.18648 1.20245 1.18719 0.93019 0.93253 0.89742 0.86656 0.92901 0.89655 0.92310 0.70139 0.93597 0.87386 0.84242 0.90657 0.92151 0.91223 0.90938 0.91890 0.75518 0.87578 0.87374 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.18 71.98 0.66 -1.00 16 2 C -0.01 -0.07 3.27 -11.54 -0.04 -0.11 16 3 C -0.15 -1.22 9.18 71.98 0.66 -0.56 16 4 C -0.02 -0.28 5.89 24.79 0.15 -0.14 16 5 O -0.21 -3.68 10.78 -3.80 -0.04 -3.72 16 6 C 0.17 2.66 13.23 130.48 1.73 4.38 16 7 N -0.52 -10.91 11.29 -304.07 -3.43 -14.35 16 8 C -0.04 -0.71 6.62 41.26 0.27 -0.44 16 9 C 0.15 2.17 5.66 85.56 0.48 2.66 16 10 N -0.68 -11.30 6.29 -495.57 -3.12 -14.42 16 11 C 0.08 1.25 2.81 44.91 0.13 1.38 16 12 H 0.06 0.86 7.80 -2.39 -0.02 0.84 16 13 C -0.13 -1.53 9.41 71.98 0.68 -0.85 16 14 C 0.12 2.63 5.31 86.38 0.46 3.08 16 15 N -0.72 -18.79 4.99 -463.05 -2.31 -21.10 16 16 C 0.54 20.35 7.85 87.66 0.69 21.04 16 17 O -0.56 -26.44 15.86 -3.03 -0.05 -26.49 16 18 C -0.13 -5.37 6.16 71.24 0.44 -4.93 16 19 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 20 C -0.55 -31.85 9.50 67.96 0.65 -31.21 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 24 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.12 1.05 6.82 -2.39 -0.02 1.03 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.28 1.69 8.06 -2.92 -0.02 1.67 16 36 H 0.05 0.72 8.06 -2.38 -0.02 0.70 16 37 H 0.11 1.14 6.46 -2.39 -0.02 1.12 16 38 H 0.34 6.82 6.70 -89.69 -0.60 6.21 16 39 H 0.07 0.62 7.45 -2.39 -0.02 0.60 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.41 8.63 7.37 -92.71 -0.68 7.94 16 45 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 46 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 47 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -80.69 405.98 -0.69 -81.38 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.30 Total: 23.65 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 7.41 Total: -5.46 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -8.58 Total: -106.09 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.09 Total: -30.21 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -80.69 -0.69 -81.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491399538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.846 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds