Wall clock time and date at job start Wed Apr 1 2020 01:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47446 * 111.00255 * 2 1 4 4 C 1.54316 * 107.23320 * 123.25926 * 3 2 1 5 5 C 1.55139 * 103.01810 * 22.28197 * 4 3 2 6 6 C 1.47843 * 110.99888 * 120.84451 * 2 1 3 7 7 H 1.08998 * 110.37465 * 332.46027 * 6 2 1 8 8 C 1.50699 * 110.37396 * 94.80463 * 6 2 1 9 9 O 1.21285 * 120.00098 * 18.54522 * 8 6 2 10 10 N 1.34775 * 120.00173 * 198.54503 * 8 6 2 11 11 C 1.47026 * 125.64721 * 359.69241 * 10 8 6 12 12 C 1.54335 * 107.26631 * 178.84909 * 11 10 8 13 13 C 1.55157 * 103.02075 * 338.13993 * 12 11 10 14 14 H 1.08998 * 111.03985 * 277.21998 * 13 12 11 15 15 N 1.46500 * 111.00348 * 153.37660 * 13 12 11 16 16 C 1.34777 * 119.99447 * 92.80402 * 15 13 12 17 17 O 1.21281 * 120.00388 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99785 * 179.97438 * 16 15 13 19 19 S 1.81008 * 109.47088 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00138 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99683 * 359.97438 * 20 19 18 22 22 C 1.38793 * 120.00335 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00197 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99746 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47285 * 89.99907 * 24 22 20 26 26 H 1.48492 * 109.47155 * 209.99874 * 24 22 20 27 27 H 1.48507 * 109.47278 * 330.00156 * 24 22 20 28 28 C 1.47423 * 125.65152 * 180.02562 * 10 8 6 29 29 H 1.09006 * 109.46978 * 59.87430 * 1 2 3 30 30 H 1.08996 * 109.47091 * 179.87344 * 1 2 3 31 31 H 1.08998 * 109.46910 * 299.87827 * 1 2 3 32 32 H 1.08997 * 109.88511 * 242.66682 * 3 2 1 33 33 H 1.08995 * 109.88851 * 3.68984 * 3 2 1 34 34 H 1.08999 * 110.70589 * 140.66668 * 4 3 2 35 35 H 1.08996 * 110.70709 * 263.73004 * 4 3 2 36 36 H 1.09005 * 110.98834 * 82.44234 * 5 4 3 37 37 H 1.08998 * 110.98952 * 206.25134 * 5 4 3 38 38 H 1.08998 * 109.87910 * 298.39583 * 11 10 8 39 39 H 1.09004 * 109.88045 * 59.55990 * 11 10 8 40 40 H 1.08996 * 110.85257 * 219.67115 * 12 11 10 41 41 H 1.09000 * 110.66240 * 96.52176 * 12 11 10 42 42 H 0.96996 * 120.00262 * 272.80507 * 15 13 12 43 43 H 1.08995 * 109.47369 * 299.99906 * 18 16 15 44 44 H 1.09002 * 109.47064 * 60.00554 * 18 16 15 45 45 H 0.97007 * 119.99941 * 180.02562 * 23 22 20 46 46 H 1.09007 * 110.36315 * 322.92894 * 28 10 8 47 47 H 1.08996 * 110.37133 * 85.24980 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0443 1.5437 6 6 1.9988 -0.7077 1.1850 7 1 1.2889 -0.6502 2.0102 8 6 2.2973 -2.1457 0.8474 9 8 2.4208 -2.4836 -0.3109 10 7 2.4270 -3.0563 1.8325 11 6 2.3089 -2.7836 3.2724 12 6 2.5025 -4.1253 4.0101 13 6 2.1650 -5.1759 2.9193 14 1 1.0886 -5.3304 2.8446 15 7 2.8577 -6.4409 3.1764 16 6 2.2461 -7.4126 3.8822 17 8 1.1222 -7.2400 4.3041 18 6 2.9584 -8.7142 4.1462 19 16 1.8835 -9.8054 5.1106 20 6 2.9363 -11.2093 5.2698 21 1 3.9214 -11.1985 4.8271 22 6 2.4998 -12.3290 5.9641 23 7 3.2860 -13.3779 6.0826 24 14 0.7963 -12.3474 6.7304 25 1 -0.1822 -12.8811 5.7492 26 1 0.8063 -13.2103 7.9388 27 1 0.4103 -10.9651 7.1124 28 6 2.7176 -4.4894 1.6451 29 1 -0.3633 0.5158 -0.8889 30 1 -0.3633 -1.0276 -0.0023 31 1 -0.3633 0.5119 0.8911 32 1 2.5697 1.5539 -0.9105 33 1 1.1755 2.0892 0.0660 34 1 3.8001 2.1033 0.9905 35 1 2.3754 1.9573 2.0685 36 1 4.1302 -0.2834 0.9118 37 1 3.5495 -0.0797 2.5986 38 1 3.0780 -2.0750 3.5797 39 1 1.3207 -2.3803 3.4935 40 1 1.8146 -4.2083 4.8515 41 1 3.5340 -4.2348 4.3449 42 1 3.7564 -6.5791 2.8387 43 1 3.2046 -9.1925 3.1982 44 1 3.8745 -8.5203 4.7041 45 1 2.9807 -14.1606 6.5676 46 1 2.2074 -4.8672 0.7590 47 1 3.7924 -4.6510 1.5627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493834975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:47 Heat of formation + Delta-G solvation = -56.194199 kcal Electronic energy + Delta-G solvation = -27004.876726 eV Core-core repulsion = 23120.971569 eV Total energy + Delta-G solvation = -3883.905156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84618 -39.69081 -38.61440 -37.26541 -34.30193 -32.62336 -32.46300 -31.41829 -30.13472 -29.64137 -27.96693 -26.17001 -25.63863 -24.17956 -22.28138 -21.72358 -21.37178 -20.62952 -19.33457 -18.04595 -17.81578 -17.03827 -16.52736 -16.30694 -15.98899 -15.51115 -15.10351 -15.01371 -14.79489 -14.53965 -14.29796 -13.98852 -13.84934 -13.68822 -13.49371 -13.27727 -13.08026 -12.82896 -12.80228 -12.59908 -12.48491 -12.12094 -11.98368 -11.81066 -11.71742 -11.69273 -11.29980 -11.29177 -11.15587 -11.02961 -10.64333 -10.05997 -9.88662 -9.63105 -9.16409 -9.02367 -8.98037 -8.78220 -8.53920 -6.95151 -6.31091 -4.03373 2.27206 2.38656 2.76109 2.84921 3.26102 3.31837 3.47931 3.51583 3.62141 3.92034 4.06363 4.17773 4.24979 4.30807 4.37859 4.54313 4.57516 4.67903 4.69450 4.84113 4.85748 4.88509 4.90352 4.98333 5.07989 5.13910 5.18284 5.23774 5.27937 5.29658 5.41141 5.43849 5.48252 5.50861 5.66228 5.67628 5.72489 5.79320 5.87094 5.97299 6.35158 6.42104 6.51783 7.14669 7.48331 7.91817 7.92454 8.37689 8.39583 9.14926 10.78066 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.001779 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.397481 B =15735.700598 C =15835.721902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.514 5.514 3 C 0.043 3.957 4 C -0.140 4.140 5 C -0.116 4.116 6 C 0.058 3.942 7 H 0.077 0.923 8 C 0.538 3.462 9 O -0.512 6.512 10 N -0.621 5.621 11 C 0.102 3.898 12 C -0.145 4.145 13 C 0.136 3.864 14 H 0.107 0.893 15 N -0.727 5.727 16 C 0.535 3.465 17 O -0.516 6.516 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.089 0.911 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.103 3.897 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.402 0.598 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.271 0.729 46 H 0.087 0.913 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 31.867 -8.200 32.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.238 5.238 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.054 4.054 7 H 0.095 0.905 8 C 0.325 3.675 9 O -0.385 6.385 10 N -0.358 5.358 11 C -0.022 4.022 12 C -0.185 4.185 13 C 0.029 3.971 14 H 0.125 0.875 15 N -0.381 5.381 16 C 0.321 3.679 17 O -0.390 6.390 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.670 4.670 21 H 0.107 0.893 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.021 4.021 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.237 0.763 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.615 31.590 -8.604 32.781 hybrid contribution 0.835 -0.203 0.556 1.024 sum -0.780 31.387 -8.048 32.412 Atomic orbital electron populations 1.22574 0.86805 1.02497 1.00825 1.63049 1.08248 1.13847 1.38681 1.22867 0.98122 0.88560 0.98854 1.22789 1.00380 0.96502 0.98213 1.22649 0.96083 0.94468 1.02239 1.22474 0.98172 0.91859 0.92845 0.90497 1.20044 0.76851 0.86236 0.84339 1.90723 1.48724 1.80190 1.18908 1.48390 1.72017 1.08659 1.06699 1.22091 1.01782 0.98331 0.79967 1.23099 1.03733 0.92808 0.98816 1.21960 0.98879 0.83244 0.92981 0.87486 1.45806 1.19630 1.14981 1.57714 1.20318 0.86316 0.84439 0.76815 1.90704 1.18544 1.80421 1.49361 1.23282 1.03511 0.95519 1.05202 1.84791 1.24266 1.13848 1.68581 1.22309 1.03900 0.99494 1.41282 0.89347 1.24711 0.97738 0.94201 0.94651 1.69937 1.36527 1.04577 1.40547 0.86735 0.84267 0.80977 0.79863 1.19198 1.19932 1.15947 1.22352 1.00904 0.80312 0.98492 0.90756 0.91288 0.95310 0.89997 0.92210 0.90033 0.91035 0.89878 0.89901 0.91021 0.91136 0.89053 0.89856 0.76314 0.88331 0.88319 0.91919 0.89509 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.12 60.06 0.55 0.70 16 2 N -0.51 -4.51 4.69 -232.98 -1.09 -5.61 16 3 C 0.04 0.27 6.90 -2.84 -0.02 0.25 16 4 C -0.14 -0.65 6.94 -24.91 -0.17 -0.83 16 5 C -0.12 -0.69 6.48 -24.60 -0.16 -0.85 16 6 C 0.06 0.46 2.24 -67.34 -0.15 0.31 16 7 H 0.08 0.50 7.13 -51.93 -0.37 0.13 16 8 C 0.54 5.87 7.13 -10.99 -0.08 5.79 16 9 O -0.51 -7.76 16.85 5.55 0.09 -7.67 16 10 N -0.62 -5.64 3.33 -170.49 -0.57 -6.21 16 11 C 0.10 0.66 6.30 -3.06 -0.02 0.64 16 12 C -0.15 -1.16 6.64 -24.89 -0.17 -1.33 16 13 C 0.14 1.37 3.43 -65.77 -0.23 1.15 16 14 H 0.11 1.31 7.54 -51.93 -0.39 0.91 16 15 N -0.73 -8.23 5.20 -51.72 -0.27 -8.50 16 16 C 0.53 8.77 7.85 -10.99 -0.09 8.69 16 17 O -0.52 -10.41 15.50 5.56 0.09 -10.33 16 18 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 19 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 20 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.77 5.50 -17.44 -0.10 2.67 16 23 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 24 Si 0.86 21.51 27.74 -169.99 -4.71 16.80 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 28 C 0.10 0.96 6.55 -2.52 -0.02 0.95 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.17 8.10 -51.93 -0.42 -0.25 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.30 7.58 -51.93 -0.39 -0.10 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.60 8.05 -51.93 -0.42 0.19 16 37 H 0.08 0.35 7.66 -51.93 -0.40 -0.05 16 38 H 0.07 0.34 7.66 -51.93 -0.40 -0.05 16 39 H 0.07 0.40 7.86 -51.93 -0.41 -0.01 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.40 3.44 8.57 -40.82 -0.35 3.09 16 43 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 46 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 47 H 0.07 0.61 8.00 -51.93 -0.42 0.20 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -36.24 393.87 -9.62 -45.86 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.76 Total: -0.90 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.11 Total: 1.59 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -1.15 Total: -45.82 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.24 -9.62 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493834975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.333 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds