Wall clock time and date at job start Wed Apr 1 2020 01:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47446 * 111.00255 * 2 1 4 4 C 1.54316 * 107.23320 * 123.25926 * 3 2 1 5 5 C 1.55139 * 103.01810 * 22.28197 * 4 3 2 6 6 C 1.47843 * 110.99888 * 120.84451 * 2 1 3 7 7 H 1.08998 * 110.37465 * 332.46027 * 6 2 1 8 8 C 1.50699 * 110.37396 * 94.80463 * 6 2 1 9 9 O 1.21285 * 120.00098 * 18.54522 * 8 6 2 10 10 N 1.34775 * 120.00173 * 198.54503 * 8 6 2 11 11 C 1.47026 * 125.64721 * 359.69241 * 10 8 6 12 12 C 1.54335 * 107.26631 * 178.84909 * 11 10 8 13 13 C 1.55157 * 103.02075 * 338.13993 * 12 11 10 14 14 H 1.08998 * 111.03985 * 277.21998 * 13 12 11 15 15 N 1.46500 * 111.00348 * 153.37660 * 13 12 11 16 16 C 1.34777 * 119.99447 * 92.80402 * 15 13 12 17 17 O 1.21281 * 120.00388 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99785 * 179.97438 * 16 15 13 19 19 S 1.81008 * 109.47088 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00138 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99683 * 359.97438 * 20 19 18 22 22 C 1.38793 * 120.00335 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00197 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99746 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47285 * 89.99907 * 24 22 20 26 26 H 1.48492 * 109.47155 * 209.99874 * 24 22 20 27 27 H 1.48507 * 109.47278 * 330.00156 * 24 22 20 28 28 C 1.47423 * 125.65152 * 180.02562 * 10 8 6 29 29 H 1.09006 * 109.46978 * 59.87430 * 1 2 3 30 30 H 1.08996 * 109.47091 * 179.87344 * 1 2 3 31 31 H 1.08998 * 109.46910 * 299.87827 * 1 2 3 32 32 H 1.08997 * 109.88511 * 242.66682 * 3 2 1 33 33 H 1.08995 * 109.88851 * 3.68984 * 3 2 1 34 34 H 1.08999 * 110.70589 * 140.66668 * 4 3 2 35 35 H 1.08996 * 110.70709 * 263.73004 * 4 3 2 36 36 H 1.09005 * 110.98834 * 82.44234 * 5 4 3 37 37 H 1.08998 * 110.98952 * 206.25134 * 5 4 3 38 38 H 1.08998 * 109.87910 * 298.39583 * 11 10 8 39 39 H 1.09004 * 109.88045 * 59.55990 * 11 10 8 40 40 H 1.08996 * 110.85257 * 219.67115 * 12 11 10 41 41 H 1.09000 * 110.66240 * 96.52176 * 12 11 10 42 42 H 0.96996 * 120.00262 * 272.80507 * 15 13 12 43 43 H 1.08995 * 109.47369 * 299.99906 * 18 16 15 44 44 H 1.09002 * 109.47064 * 60.00554 * 18 16 15 45 45 H 0.97007 * 119.99941 * 180.02562 * 23 22 20 46 46 H 1.09007 * 110.36315 * 322.92894 * 28 10 8 47 47 H 1.08996 * 110.37133 * 85.24980 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0443 1.5437 6 6 1.9988 -0.7077 1.1850 7 1 1.2889 -0.6502 2.0102 8 6 2.2973 -2.1457 0.8474 9 8 2.4208 -2.4836 -0.3109 10 7 2.4270 -3.0563 1.8325 11 6 2.3089 -2.7836 3.2724 12 6 2.5025 -4.1253 4.0101 13 6 2.1650 -5.1759 2.9193 14 1 1.0886 -5.3304 2.8446 15 7 2.8577 -6.4409 3.1764 16 6 2.2461 -7.4126 3.8822 17 8 1.1222 -7.2400 4.3041 18 6 2.9584 -8.7142 4.1462 19 16 1.8835 -9.8054 5.1106 20 6 2.9363 -11.2093 5.2698 21 1 3.9214 -11.1985 4.8271 22 6 2.4998 -12.3290 5.9641 23 7 3.2860 -13.3779 6.0826 24 14 0.7963 -12.3474 6.7304 25 1 -0.1822 -12.8811 5.7492 26 1 0.8063 -13.2103 7.9388 27 1 0.4103 -10.9651 7.1124 28 6 2.7176 -4.4894 1.6451 29 1 -0.3633 0.5158 -0.8889 30 1 -0.3633 -1.0276 -0.0023 31 1 -0.3633 0.5119 0.8911 32 1 2.5697 1.5539 -0.9105 33 1 1.1755 2.0892 0.0660 34 1 3.8001 2.1033 0.9905 35 1 2.3754 1.9573 2.0685 36 1 4.1302 -0.2834 0.9118 37 1 3.5495 -0.0797 2.5986 38 1 3.0780 -2.0750 3.5797 39 1 1.3207 -2.3803 3.4935 40 1 1.8146 -4.2083 4.8515 41 1 3.5340 -4.2348 4.3449 42 1 3.7564 -6.5791 2.8387 43 1 3.2046 -9.1925 3.1982 44 1 3.8745 -8.5203 4.7041 45 1 2.9807 -14.1606 6.5676 46 1 2.2074 -4.8672 0.7590 47 1 3.7924 -4.6510 1.5627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493834975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:46 Heat of formation + Delta-G solvation = -83.646902 kcal Electronic energy + Delta-G solvation = -27006.067164 eV Core-core repulsion = 23120.971569 eV Total energy + Delta-G solvation = -3885.095595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60702 -40.73441 -39.40673 -38.16226 -35.38009 -34.66402 -33.12870 -32.36330 -30.75784 -30.72596 -28.87697 -27.83303 -26.68646 -24.91838 -22.93428 -22.42233 -21.97784 -21.74866 -20.03661 -19.90157 -18.61605 -18.14058 -17.60067 -17.08613 -17.03583 -16.63548 -16.48200 -16.40639 -15.76449 -15.46525 -15.15318 -14.91105 -14.82869 -14.75226 -14.62655 -14.27903 -13.96453 -13.79685 -13.71347 -13.47784 -13.33669 -13.11751 -13.03737 -12.92818 -12.72793 -12.56347 -12.50046 -12.32718 -12.11632 -11.86946 -11.85239 -11.67061 -11.16607 -11.06067 -10.86902 -10.52848 -10.20749 -9.74303 -9.32145 -8.98476 -8.50782 -6.21442 0.98002 1.32284 1.43115 1.49799 1.53617 1.56551 1.73324 2.24486 2.29667 2.72057 2.87610 2.98143 3.28218 3.47869 3.59633 3.63419 3.84274 3.94244 3.94871 3.98407 4.13702 4.17687 4.23884 4.25659 4.38926 4.42198 4.49255 4.51361 4.58106 4.70144 4.74135 4.75954 4.88165 4.93864 4.94251 4.99266 5.05551 5.06506 5.14714 5.28063 5.41845 5.71360 5.83770 6.02358 6.12490 6.39031 6.45075 6.94459 7.13568 7.15690 8.61482 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.001779 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.397481 B =15735.700598 C =15835.721902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.040 3.960 4 C -0.132 4.132 5 C -0.113 4.113 6 C 0.061 3.939 7 H 0.096 0.904 8 C 0.533 3.467 9 O -0.567 6.567 10 N -0.619 5.619 11 C 0.103 3.897 12 C -0.138 4.138 13 C 0.135 3.865 14 H 0.085 0.915 15 N -0.702 5.702 16 C 0.542 3.458 17 O -0.558 6.558 18 C -0.112 4.112 19 S -0.174 6.174 20 C -0.529 4.529 21 H 0.063 0.937 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.264 1.264 26 H -0.260 1.260 27 H -0.235 1.235 28 C 0.107 3.893 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.419 0.581 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.276 0.724 46 H 0.067 0.933 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 34.623 -7.130 35.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.087 4.087 4 C -0.170 4.170 5 C -0.151 4.151 6 C -0.051 4.051 7 H 0.114 0.886 8 C 0.322 3.678 9 O -0.444 6.444 10 N -0.354 5.354 11 C -0.019 4.019 12 C -0.177 4.177 13 C 0.029 3.971 14 H 0.103 0.897 15 N -0.356 5.356 16 C 0.328 3.672 17 O -0.435 6.435 18 C -0.263 4.263 19 S 0.052 5.948 20 C -0.677 4.677 21 H 0.081 0.919 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.189 1.189 26 H -0.184 1.184 27 H -0.159 1.159 28 C -0.017 4.017 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.257 0.743 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.463 34.379 -7.527 35.224 hybrid contribution 0.894 -0.987 0.095 1.335 sum -0.569 33.392 -7.432 34.214 Atomic orbital electron populations 1.22534 0.86398 1.01577 1.01918 1.62950 1.08962 1.15451 1.39771 1.22907 0.98810 0.87552 0.99382 1.22782 1.00562 0.95805 0.97878 1.22682 0.94322 0.94839 1.03290 1.22524 0.99667 0.89855 0.93051 0.88597 1.20707 0.75781 0.87566 0.83750 1.90692 1.51384 1.81228 1.21122 1.48453 1.71052 1.08137 1.07772 1.22272 1.03711 0.98051 0.77869 1.23052 1.04350 0.92459 0.97806 1.21970 0.97563 0.82968 0.94597 0.89701 1.45514 1.20049 1.14353 1.55707 1.19903 0.85622 0.84481 0.77227 1.90699 1.20194 1.81079 1.51542 1.23274 1.02822 0.95299 1.04915 1.84698 1.25785 1.13835 1.70470 1.22471 1.03447 1.01155 1.40612 0.91920 1.25568 1.01284 0.93969 0.95231 1.70018 1.38399 1.05382 1.41691 0.85866 0.79854 0.81132 0.79509 1.18891 1.18417 1.15858 1.22254 1.01516 0.80785 0.97136 0.90413 0.93172 0.93450 0.91053 0.90862 0.89011 0.89298 0.91701 0.87420 0.88068 0.89806 0.89591 0.88491 0.74311 0.86914 0.86416 0.91410 0.91479 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.12 127.69 1.16 1.49 16 2 N -0.55 -9.09 4.69 -891.03 -4.18 -13.27 16 3 C 0.04 0.43 6.90 86.64 0.60 1.03 16 4 C -0.13 -0.84 6.94 31.77 0.22 -0.62 16 5 C -0.11 -1.04 6.48 31.98 0.21 -0.83 16 6 C 0.06 0.85 2.24 44.64 0.10 0.95 16 7 H 0.10 0.96 7.13 -2.39 -0.02 0.94 16 8 C 0.53 11.21 7.13 87.66 0.63 11.84 16 9 O -0.57 -17.62 16.85 -3.05 -0.05 -17.67 16 10 N -0.62 -10.19 3.33 -811.71 -2.70 -12.89 16 11 C 0.10 1.01 6.30 86.73 0.55 1.55 16 12 C -0.14 -1.82 6.64 31.79 0.21 -1.60 16 13 C 0.14 2.52 3.43 46.39 0.16 2.68 16 14 H 0.08 2.04 7.54 -2.39 -0.02 2.02 16 15 N -0.70 -14.52 5.20 -435.92 -2.27 -16.78 16 16 C 0.54 17.03 7.85 87.66 0.69 17.72 16 17 O -0.56 -22.14 15.50 -3.03 -0.05 -22.19 16 18 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 19 S -0.17 -8.55 18.55 -56.49 -1.05 -9.60 16 20 C -0.53 -30.31 10.04 67.95 0.68 -29.63 16 21 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 22 C 0.04 2.61 5.50 84.86 0.47 3.07 16 23 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 24 Si 0.91 44.45 27.74 68.60 1.90 46.35 16 25 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.23 -11.30 6.74 99.48 0.67 -10.63 16 28 C 0.11 1.88 6.55 86.86 0.57 2.44 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.45 8.10 -2.39 -0.02 0.43 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.57 7.58 -2.39 -0.02 0.55 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.85 8.05 -2.38 -0.02 0.83 16 37 H 0.11 0.43 7.66 -2.39 -0.02 0.42 16 38 H 0.10 0.48 7.66 -2.39 -0.02 0.47 16 39 H 0.08 0.66 7.86 -2.38 -0.02 0.64 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.42 6.03 8.57 -92.71 -0.79 5.24 16 43 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 44 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 45 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 46 H 0.07 1.46 8.04 -2.38 -0.02 1.44 16 47 H 0.09 1.30 8.00 -2.39 -0.02 1.28 16 Total: -1.00 -81.22 393.87 -1.27 -82.49 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.14 Total: 12.06 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.68 Total: 6.58 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -8.84 Total: -98.03 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.10 Total: -39.86 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.05 Total: -9.60 kcal Total: -81.22 -1.27 -82.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493834975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.155 kcal (2) G-P(sol) polarization free energy of solvation -81.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds