Wall clock time and date at job start Wed Apr 1 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47846 * 110.99768 * 2 1 4 4 C 1.54911 * 104.79603 * 146.36476 * 3 2 1 5 5 C 1.55402 * 101.73939 * 323.02195 * 4 3 2 6 6 C 1.47441 * 111.00316 * 120.84225 * 2 1 3 7 7 H 1.09004 * 109.88427 * 117.16974 * 6 2 1 8 8 C 1.50706 * 109.88604 * 356.15346 * 6 2 1 9 9 O 1.21280 * 119.99584 * 307.55198 * 8 6 2 10 10 N 1.34769 * 120.00012 * 127.55379 * 8 6 2 11 11 C 1.47426 * 125.65195 * 0.03667 * 10 8 6 12 12 C 1.54914 * 104.83654 * 204.09620 * 11 10 8 13 13 C 1.55159 * 101.57526 * 322.99057 * 12 11 10 14 14 H 1.08997 * 110.87203 * 277.06206 * 13 12 11 15 15 N 1.46507 * 110.71428 * 153.86912 * 13 12 11 16 16 C 1.34774 * 120.00290 * 91.47638 * 15 13 12 17 17 O 1.21284 * 119.99780 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99749 * 179.97438 * 16 15 13 19 19 S 1.80999 * 109.46705 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99935 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99897 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99878 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99928 * 0.27414 * 22 20 19 25 25 H 1.48499 * 109.46938 * 269.72277 * 24 22 20 26 26 H 1.48500 * 109.47364 * 29.72396 * 24 22 20 27 27 H 1.48499 * 109.46958 * 149.72606 * 24 22 20 28 28 C 1.47025 * 125.64892 * 180.02562 * 10 8 6 29 29 H 1.09000 * 109.47107 * 308.68411 * 1 2 3 30 30 H 1.09005 * 109.46887 * 68.68520 * 1 2 3 31 31 H 1.08996 * 109.46945 * 188.68198 * 1 2 3 32 32 H 1.08991 * 110.37708 * 265.19265 * 3 2 1 33 33 H 1.09005 * 110.37556 * 27.42718 * 3 2 1 34 34 H 1.08997 * 110.99300 * 81.01816 * 4 3 2 35 35 H 1.08994 * 110.99260 * 204.84550 * 4 3 2 36 36 H 1.09004 * 110.67728 * 277.17521 * 5 4 3 37 37 H 1.09002 * 110.84583 * 153.86577 * 5 4 3 38 38 H 1.09002 * 110.36460 * 322.93785 * 11 10 8 39 39 H 1.09004 * 110.36654 * 85.14372 * 11 10 8 40 40 H 1.08999 * 111.00303 * 204.91889 * 12 11 10 41 41 H 1.08997 * 111.00231 * 81.06081 * 12 11 10 42 42 H 0.97000 * 119.99682 * 271.47186 * 15 13 12 43 43 H 1.08996 * 109.47257 * 60.00166 * 18 16 15 44 44 H 1.09001 * 109.46881 * 299.99475 * 18 16 15 45 45 H 0.96993 * 120.00129 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.88650 * 59.55327 * 28 10 8 47 47 H 1.08999 * 110.00624 * 298.45984 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9182 0.2789 1.9329 6 6 1.9975 -0.7057 1.1818 7 1 2.5673 -1.5801 0.8674 8 6 0.8611 -1.1292 2.0766 9 8 0.0375 -0.3153 2.4371 10 7 0.7603 -2.4124 2.4760 11 6 1.6876 -3.5002 2.1151 12 6 0.8545 -4.7976 2.2645 13 6 -0.0143 -4.4684 3.5072 14 1 0.5359 -4.6622 4.4280 15 7 -1.2646 -5.2316 3.4824 16 6 -1.3320 -6.4344 4.0866 17 8 -0.3575 -6.8852 4.6505 18 6 -2.6184 -7.2191 4.0615 19 16 -2.3912 -8.7785 4.9519 20 6 -4.0006 -9.4724 4.7693 21 1 -4.7637 -8.9315 4.2294 22 6 -4.2875 -10.7140 5.3194 23 7 -5.4899 -11.2321 5.1834 24 14 -2.9697 -11.6459 6.2598 25 1 -2.2166 -12.5181 5.3232 26 1 -2.0376 -10.6798 6.8945 27 1 -3.6075 -12.4809 7.3092 28 6 -0.2927 -2.9593 3.3442 29 1 -0.3633 0.6423 0.8022 30 1 -0.3633 0.3736 -0.9574 31 1 -0.3633 -1.0159 0.1551 32 1 2.2147 1.7039 -1.0181 33 1 1.2880 2.0596 0.4707 34 1 4.1302 0.9282 0.2243 35 1 3.5494 2.2720 1.2641 36 1 2.3782 0.7705 2.7421 37 1 3.8018 -0.2335 2.3133 38 1 2.0268 -3.3835 1.0857 39 1 2.5394 -3.5138 2.7951 40 1 1.4988 -5.6559 2.4545 41 1 0.2317 -4.9654 1.3858 42 1 -2.0439 -4.8712 3.0311 43 1 -2.8968 -7.4274 3.0285 44 1 -3.4071 -6.6392 4.5406 45 1 -5.6906 -12.0996 5.5681 46 1 -1.2687 -2.8100 2.8824 47 1 -0.2648 -2.4701 4.3178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493834976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:49 Heat of formation + Delta-G solvation = -50.077750 kcal Electronic energy + Delta-G solvation = -27230.040404 eV Core-core repulsion = 23346.400476 eV Total energy + Delta-G solvation = -3883.639927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27568 -39.81745 -38.50858 -37.23179 -34.36050 -32.54372 -32.46690 -31.49052 -30.16761 -29.65466 -28.03042 -26.01322 -25.64418 -24.21524 -22.37826 -21.77370 -21.38792 -20.65399 -19.33121 -18.09182 -17.90012 -17.03399 -16.52194 -16.27753 -15.99273 -15.72733 -15.39433 -15.09772 -14.97779 -14.59433 -14.31051 -13.94869 -13.83093 -13.54646 -13.40138 -13.23199 -13.02378 -12.82653 -12.60566 -12.53759 -12.31420 -12.19826 -11.91458 -11.80515 -11.68518 -11.59916 -11.33225 -11.29747 -11.19764 -11.03592 -10.65060 -10.39869 -9.89358 -9.64781 -9.21298 -9.10554 -9.02540 -8.68949 -8.54802 -6.95823 -6.31586 -4.03993 2.08098 2.34484 2.74984 2.83502 3.25813 3.30990 3.47616 3.54377 3.59668 3.82630 4.04372 4.15515 4.19911 4.30194 4.36992 4.57325 4.66587 4.70720 4.76324 4.83886 4.86112 4.92736 5.04575 5.07402 5.12402 5.18676 5.20549 5.26340 5.34658 5.36693 5.38589 5.47846 5.52268 5.62701 5.67395 5.68834 5.70597 5.76518 5.85738 5.96199 6.34899 6.39409 6.46481 7.00741 7.45681 7.68402 7.91349 8.35764 8.39082 9.14319 10.77604 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037216 B = 0.001825 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.179180 B =15336.784162 C =15691.798839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.509 5.509 3 C 0.037 3.963 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.054 3.946 7 H 0.105 0.895 8 C 0.520 3.480 9 O -0.537 6.537 10 N -0.613 5.613 11 C 0.097 3.903 12 C -0.146 4.146 13 C 0.138 3.862 14 H 0.109 0.891 15 N -0.729 5.729 16 C 0.535 3.465 17 O -0.516 6.516 18 C -0.125 4.125 19 S -0.140 6.140 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.235 1.235 27 H -0.274 1.274 28 C 0.101 3.899 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.402 0.598 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.074 0.926 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.674 24.804 -10.709 32.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.234 5.234 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.168 4.168 6 C -0.057 4.057 7 H 0.122 0.878 8 C 0.308 3.692 9 O -0.413 6.413 10 N -0.348 5.348 11 C -0.026 4.026 12 C -0.185 4.185 13 C 0.031 3.969 14 H 0.127 0.873 15 N -0.383 5.383 16 C 0.321 3.679 17 O -0.390 6.390 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.159 1.159 27 H -0.199 1.199 28 C -0.022 4.022 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.236 0.764 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.863 24.153 -9.999 32.236 hybrid contribution -1.612 0.337 0.166 1.655 sum 17.251 24.490 -9.833 31.528 Atomic orbital electron populations 1.22949 0.86814 1.02397 1.02153 1.64090 1.09234 1.14928 1.35131 1.23173 0.95734 0.89237 1.00885 1.22743 0.97757 0.99374 0.96551 1.22798 0.99062 0.96456 0.98441 1.22684 0.93971 0.99471 0.89578 0.87757 1.20793 0.87153 0.80391 0.80867 1.90693 1.43264 1.50708 1.56673 1.48528 1.28231 1.08286 1.49748 1.22478 0.92946 0.85679 1.01525 1.23260 0.99113 0.97179 0.98922 1.21849 0.86357 0.88769 0.99912 0.87343 1.45927 1.13760 1.20064 1.58558 1.20316 0.90039 0.80435 0.77083 1.90703 1.37599 1.68259 1.42452 1.23284 0.97289 1.01216 1.05766 1.84781 1.20237 1.15586 1.70821 1.22311 0.95494 1.07351 1.41849 0.89360 1.24719 0.95484 0.96230 0.94885 1.69937 1.19713 1.18070 1.43863 0.86732 0.82570 0.81650 0.80871 1.19205 1.15926 1.19919 1.22110 0.91831 0.92999 0.95279 0.91727 0.91567 0.92016 0.89631 0.92893 0.90218 0.90262 0.90418 0.89848 0.89750 0.90475 0.88688 0.89887 0.76361 0.88374 0.88328 0.91912 0.90724 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.19 60.06 0.49 0.54 16 2 N -0.51 -4.30 5.44 -232.95 -1.27 -5.57 16 3 C 0.04 0.25 6.73 -2.30 -0.02 0.24 16 4 C -0.13 -0.67 7.08 -24.45 -0.17 -0.84 16 5 C -0.13 -0.83 6.47 -24.77 -0.16 -0.99 16 6 C 0.05 0.42 3.63 -67.88 -0.25 0.18 16 7 H 0.10 0.67 6.08 -51.93 -0.32 0.36 16 8 C 0.52 5.18 4.95 -10.99 -0.05 5.12 16 9 O -0.54 -7.03 14.11 5.56 0.08 -6.95 16 10 N -0.61 -5.33 3.33 -170.52 -0.57 -5.90 16 11 C 0.10 0.63 6.47 -2.53 -0.02 0.61 16 12 C -0.15 -1.18 6.77 -24.58 -0.17 -1.35 16 13 C 0.14 1.35 3.32 -66.09 -0.22 1.13 16 14 H 0.11 1.22 7.55 -51.93 -0.39 0.83 16 15 N -0.73 -8.27 5.18 -52.03 -0.27 -8.54 16 16 C 0.54 8.73 7.85 -10.99 -0.09 8.65 16 17 O -0.52 -10.28 15.51 5.55 0.09 -10.19 16 18 C -0.12 -2.30 6.16 36.01 0.22 -2.07 16 19 S -0.14 -3.46 18.54 -107.50 -1.99 -5.46 16 20 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 24 Si 0.86 21.48 27.74 -169.99 -4.72 16.76 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.24 -5.87 6.73 56.52 0.38 -5.49 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.10 0.92 6.62 -3.07 -0.02 0.90 16 29 H 0.06 0.72 5.81 -51.93 -0.30 0.42 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.63 6.96 -51.93 -0.36 0.26 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.39 7.63 -51.93 -0.40 0.00 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.44 6.84 -51.93 -0.36 0.09 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.40 3.59 8.37 -40.82 -0.34 3.25 16 43 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 0.68 7.72 -51.93 -0.40 0.28 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -34.82 385.08 -9.79 -44.61 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.49 Total: 0.68 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.23 Total: 0.26 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -1.33 Total: -45.52 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.16 Total: -17.14 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.76 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.82 -9.79 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493834976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.468 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds