Wall clock time and date at job start Wed Apr 1 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47846 * 110.99768 * 2 1 4 4 C 1.54911 * 104.79603 * 146.36476 * 3 2 1 5 5 C 1.55402 * 101.73939 * 323.02195 * 4 3 2 6 6 C 1.47441 * 111.00316 * 120.84225 * 2 1 3 7 7 H 1.09004 * 109.88427 * 117.16974 * 6 2 1 8 8 C 1.50706 * 109.88604 * 356.15346 * 6 2 1 9 9 O 1.21280 * 119.99584 * 307.55198 * 8 6 2 10 10 N 1.34769 * 120.00012 * 127.55379 * 8 6 2 11 11 C 1.47426 * 125.65195 * 0.03667 * 10 8 6 12 12 C 1.54914 * 104.83654 * 204.09620 * 11 10 8 13 13 C 1.55159 * 101.57526 * 322.99057 * 12 11 10 14 14 H 1.08997 * 110.87203 * 277.06206 * 13 12 11 15 15 N 1.46507 * 110.71428 * 153.86912 * 13 12 11 16 16 C 1.34774 * 120.00290 * 91.47638 * 15 13 12 17 17 O 1.21284 * 119.99780 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99749 * 179.97438 * 16 15 13 19 19 S 1.80999 * 109.46705 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99935 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99897 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99878 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99928 * 0.27414 * 22 20 19 25 25 H 1.48499 * 109.46938 * 269.72277 * 24 22 20 26 26 H 1.48500 * 109.47364 * 29.72396 * 24 22 20 27 27 H 1.48499 * 109.46958 * 149.72606 * 24 22 20 28 28 C 1.47025 * 125.64892 * 180.02562 * 10 8 6 29 29 H 1.09000 * 109.47107 * 308.68411 * 1 2 3 30 30 H 1.09005 * 109.46887 * 68.68520 * 1 2 3 31 31 H 1.08996 * 109.46945 * 188.68198 * 1 2 3 32 32 H 1.08991 * 110.37708 * 265.19265 * 3 2 1 33 33 H 1.09005 * 110.37556 * 27.42718 * 3 2 1 34 34 H 1.08997 * 110.99300 * 81.01816 * 4 3 2 35 35 H 1.08994 * 110.99260 * 204.84550 * 4 3 2 36 36 H 1.09004 * 110.67728 * 277.17521 * 5 4 3 37 37 H 1.09002 * 110.84583 * 153.86577 * 5 4 3 38 38 H 1.09002 * 110.36460 * 322.93785 * 11 10 8 39 39 H 1.09004 * 110.36654 * 85.14372 * 11 10 8 40 40 H 1.08999 * 111.00303 * 204.91889 * 12 11 10 41 41 H 1.08997 * 111.00231 * 81.06081 * 12 11 10 42 42 H 0.97000 * 119.99682 * 271.47186 * 15 13 12 43 43 H 1.08996 * 109.47257 * 60.00166 * 18 16 15 44 44 H 1.09001 * 109.46881 * 299.99475 * 18 16 15 45 45 H 0.96993 * 120.00129 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.88650 * 59.55327 * 28 10 8 47 47 H 1.08999 * 110.00624 * 298.45984 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9182 0.2789 1.9329 6 6 1.9975 -0.7057 1.1818 7 1 2.5673 -1.5801 0.8674 8 6 0.8611 -1.1292 2.0766 9 8 0.0375 -0.3153 2.4371 10 7 0.7603 -2.4124 2.4760 11 6 1.6876 -3.5002 2.1151 12 6 0.8545 -4.7976 2.2645 13 6 -0.0143 -4.4684 3.5072 14 1 0.5359 -4.6622 4.4280 15 7 -1.2646 -5.2316 3.4824 16 6 -1.3320 -6.4344 4.0866 17 8 -0.3575 -6.8852 4.6505 18 6 -2.6184 -7.2191 4.0615 19 16 -2.3912 -8.7785 4.9519 20 6 -4.0006 -9.4724 4.7693 21 1 -4.7637 -8.9315 4.2294 22 6 -4.2875 -10.7140 5.3194 23 7 -5.4899 -11.2321 5.1834 24 14 -2.9697 -11.6459 6.2598 25 1 -2.2166 -12.5181 5.3232 26 1 -2.0376 -10.6798 6.8945 27 1 -3.6075 -12.4809 7.3092 28 6 -0.2927 -2.9593 3.3442 29 1 -0.3633 0.6423 0.8022 30 1 -0.3633 0.3736 -0.9574 31 1 -0.3633 -1.0159 0.1551 32 1 2.2147 1.7039 -1.0181 33 1 1.2880 2.0596 0.4707 34 1 4.1302 0.9282 0.2243 35 1 3.5494 2.2720 1.2641 36 1 2.3782 0.7705 2.7421 37 1 3.8018 -0.2335 2.3133 38 1 2.0268 -3.3835 1.0857 39 1 2.5394 -3.5138 2.7951 40 1 1.4988 -5.6559 2.4545 41 1 0.2317 -4.9654 1.3858 42 1 -2.0439 -4.8712 3.0311 43 1 -2.8968 -7.4274 3.0285 44 1 -3.4071 -6.6392 4.5406 45 1 -5.6906 -12.0996 5.5681 46 1 -1.2687 -2.8100 2.8824 47 1 -0.2648 -2.4701 4.3178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493834976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:49 Heat of formation + Delta-G solvation = -76.531077 kcal Electronic energy + Delta-G solvation = -27231.187506 eV Core-core repulsion = 23346.400476 eV Total energy + Delta-G solvation = -3884.787030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99152 -40.88713 -39.37138 -38.03246 -35.41812 -34.66866 -33.12180 -32.44350 -30.79016 -30.75952 -28.94524 -27.84206 -26.65449 -24.95133 -23.06692 -22.30007 -22.22243 -21.76466 -20.01267 -19.91266 -18.72569 -18.17511 -17.52037 -17.09117 -17.04700 -16.75095 -16.63212 -16.41412 -16.08658 -15.66981 -15.20095 -14.97519 -14.91793 -14.76630 -14.59388 -14.23179 -13.85472 -13.76829 -13.63248 -13.34748 -13.27364 -13.08728 -13.00698 -12.93947 -12.75153 -12.58651 -12.50216 -12.27339 -12.09195 -11.97182 -11.86561 -11.75219 -11.16707 -11.13823 -11.04142 -10.54016 -10.22101 -9.85996 -9.36633 -8.99009 -8.51274 -6.22145 0.97685 1.31986 1.35098 1.44597 1.51138 1.53099 1.73155 2.23916 2.28124 2.71090 2.87019 2.94058 3.16497 3.41863 3.52471 3.67211 3.72695 3.81858 3.97910 4.06908 4.12393 4.21523 4.23895 4.26753 4.33109 4.47407 4.49154 4.52462 4.56812 4.67817 4.72211 4.77114 4.84516 4.91188 4.95108 4.99561 5.03702 5.04912 5.13841 5.25517 5.38927 5.70680 5.75034 5.82872 6.11768 6.29759 6.39188 6.93732 6.94776 7.12957 8.61079 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037216 B = 0.001825 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.179180 B =15336.784162 C =15691.798839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.032 3.968 4 C -0.119 4.119 5 C -0.128 4.128 6 C 0.054 3.946 7 H 0.125 0.875 8 C 0.516 3.484 9 O -0.575 6.575 10 N -0.612 5.612 11 C 0.100 3.900 12 C -0.140 4.140 13 C 0.138 3.862 14 H 0.097 0.903 15 N -0.706 5.706 16 C 0.543 3.457 17 O -0.554 6.554 18 C -0.114 4.114 19 S -0.171 6.171 20 C -0.531 4.531 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.916 3.084 25 H -0.261 1.261 26 H -0.235 1.235 27 H -0.261 1.261 28 C 0.107 3.893 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.416 0.584 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.277 0.723 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.135 25.679 -11.654 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.238 5.238 3 C -0.096 4.096 4 C -0.157 4.157 5 C -0.167 4.167 6 C -0.057 4.057 7 H 0.142 0.858 8 C 0.306 3.694 9 O -0.455 6.455 10 N -0.346 5.346 11 C -0.022 4.022 12 C -0.179 4.179 13 C 0.032 3.968 14 H 0.115 0.885 15 N -0.360 5.360 16 C 0.329 3.671 17 O -0.432 6.432 18 C -0.265 4.265 19 S 0.056 5.944 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.159 1.159 27 H -0.185 1.185 28 C -0.017 4.017 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.253 0.747 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.324 25.055 -10.977 34.684 hybrid contribution -2.421 0.220 0.372 2.460 sum 18.903 25.275 -10.605 33.296 Atomic orbital electron populations 1.22797 0.87706 1.01212 1.01761 1.64174 1.08384 1.15925 1.35326 1.23276 0.96225 0.88201 1.01860 1.22757 0.97222 0.99710 0.95969 1.22826 0.99246 0.96523 0.98106 1.22850 0.93320 1.00430 0.89126 0.85764 1.21245 0.87246 0.80239 0.80691 1.90684 1.44783 1.51825 1.58172 1.48592 1.28339 1.08510 1.49170 1.22625 0.92541 0.83750 1.03284 1.23206 0.98916 0.97996 0.97771 1.21907 0.85509 0.88852 1.00517 0.88501 1.45674 1.15131 1.18360 1.56819 1.19861 0.88553 0.81442 0.77277 1.90697 1.38433 1.69505 1.44548 1.23280 0.99204 0.98218 1.05767 1.84660 1.17753 1.19483 1.72531 1.22479 0.96775 1.07489 1.41076 0.92051 1.25592 0.97476 0.97226 0.95817 1.70021 1.21502 1.18862 1.45149 0.85850 0.80046 0.80424 0.79946 1.18583 1.15908 1.18523 1.21975 0.92238 0.92275 0.95238 0.93923 0.90657 0.93052 0.88404 0.94180 0.88697 0.89205 0.92494 0.87713 0.87658 0.88775 0.88923 0.89608 0.74654 0.86744 0.86944 0.91399 0.90686 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 8.19 127.69 1.05 1.29 16 2 N -0.51 -7.86 5.44 -890.92 -4.85 -12.71 16 3 C 0.03 0.38 6.73 86.77 0.58 0.97 16 4 C -0.12 -0.97 7.08 32.07 0.23 -0.74 16 5 C -0.13 -1.39 6.47 31.86 0.21 -1.19 16 6 C 0.05 0.73 3.63 44.51 0.16 0.89 16 7 H 0.12 1.17 6.08 -2.38 -0.01 1.15 16 8 C 0.52 9.73 4.95 87.66 0.43 10.16 16 9 O -0.58 -15.17 14.11 -3.03 -0.04 -15.22 16 10 N -0.61 -9.58 3.33 -811.79 -2.70 -12.28 16 11 C 0.10 1.01 6.47 86.86 0.56 1.57 16 12 C -0.14 -1.94 6.77 31.99 0.22 -1.73 16 13 C 0.14 2.47 3.32 46.18 0.15 2.63 16 14 H 0.10 2.06 7.55 -2.39 -0.02 2.04 16 15 N -0.71 -14.78 5.18 -436.91 -2.26 -17.04 16 16 C 0.54 16.98 7.85 87.66 0.69 17.67 16 17 O -0.55 -21.58 15.51 -3.04 -0.05 -21.62 16 18 C -0.11 -4.05 6.16 71.24 0.44 -3.61 16 19 S -0.17 -8.36 18.54 -56.49 -1.05 -9.41 16 20 C -0.53 -30.46 10.04 67.95 0.68 -29.78 16 21 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 22 C 0.04 2.57 5.50 84.86 0.47 3.04 16 23 N -0.92 -55.52 13.97 21.65 0.30 -55.21 16 24 Si 0.92 44.35 27.74 68.60 1.90 46.25 16 25 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.24 -11.31 6.73 99.48 0.67 -10.64 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 28 C 0.11 1.81 6.62 86.73 0.57 2.38 16 29 H 0.04 0.97 5.81 -2.39 -0.01 0.96 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 1.02 6.96 -2.39 -0.02 1.00 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.58 7.63 -2.38 -0.02 0.57 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.87 7.70 -2.38 -0.02 0.85 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.69 6.84 -2.39 -0.02 0.68 16 39 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.42 6.53 8.37 -92.71 -0.78 5.76 16 43 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 44 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 45 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.07 1.28 7.72 -2.39 -0.02 1.26 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -76.59 385.08 -2.14 -78.73 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.17 Total: 14.97 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.44 Total: 3.55 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -9.51 Total: -97.25 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.09 Total: -36.84 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.05 Total: -9.41 kcal Total: -76.59 -2.14 -78.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493834976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.196 kcal (2) G-P(sol) polarization free energy of solvation -76.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds