Wall clock time and date at job start Wed Apr 1 2020 00:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 C 1.50694 * 109.47337 * 120.00316 * 2 1 3 5 5 O 1.21279 * 120.00167 * 119.99880 * 4 2 1 6 6 N 1.34779 * 120.00074 * 300.00325 * 4 2 1 7 7 C 1.46499 * 120.00355 * 180.02562 * 6 4 2 8 8 C 1.53006 * 117.49921 * 223.74670 * 7 6 4 9 9 C 1.52996 * 117.50026 * 155.08722 * 7 6 4 10 10 N 1.46901 * 109.47105 * 240.00272 * 2 1 3 11 11 C 1.47478 * 110.99892 * 74.42584 * 10 2 1 12 12 C 1.53511 * 87.93383 * 138.70533 * 11 10 2 13 13 C 1.53004 * 114.16727 * 220.33236 * 12 11 10 14 14 N 1.46507 * 109.46621 * 268.83578 * 13 12 11 15 15 C 1.34775 * 119.99850 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00007 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99997 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47219 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00301 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00518 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99616 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00364 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47122 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47045 * 119.99542 * 23 21 19 26 26 H 1.48493 * 109.47331 * 239.99899 * 23 21 19 27 27 C 1.47482 * 110.99691 * 170.39148 * 10 2 1 28 28 H 1.08994 * 109.47075 * 184.93263 * 1 2 3 29 29 H 1.08994 * 109.47177 * 304.93159 * 1 2 3 30 30 H 1.09002 * 109.46974 * 64.93473 * 1 2 3 31 31 H 0.97003 * 119.99752 * 359.97438 * 6 4 2 32 32 H 1.09003 * 115.54961 * 9.41365 * 7 6 4 33 33 H 1.08996 * 117.49611 * 359.97438 * 8 7 6 34 34 H 1.08996 * 117.50055 * 145.02001 * 8 7 6 35 35 H 1.09001 * 117.49962 * 214.97815 * 9 7 6 36 36 H 1.08999 * 117.50107 * 359.97006 * 9 7 6 37 37 H 1.09004 * 113.47269 * 253.46672 * 11 10 2 38 38 H 1.09002 * 113.47824 * 23.93329 * 11 10 2 39 39 H 1.08992 * 114.17636 * 87.61979 * 12 11 10 40 40 H 1.08998 * 109.47628 * 28.83335 * 13 12 11 41 41 H 1.08997 * 109.47492 * 148.83806 * 13 12 11 42 42 H 0.96996 * 119.99909 * 359.97438 * 14 13 12 43 43 H 1.08996 * 109.47582 * 300.00129 * 17 15 14 44 44 H 1.09004 * 109.47083 * 59.99905 * 17 15 14 45 45 H 0.97004 * 119.99375 * 180.02562 * 22 21 19 46 46 H 1.08996 * 113.48379 * 336.06702 * 27 10 2 47 47 H 1.09000 * 113.46928 * 106.47399 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.2029 -1.1620 4.7937 9 6 2.3174 -0.1227 4.9380 10 7 2.0197 -0.6924 -1.1995 11 6 1.8473 0.1455 -2.4008 12 6 3.2365 -0.3214 -2.8578 13 6 4.0905 0.7793 -3.4904 14 7 3.8693 0.7973 -4.9385 15 6 4.5213 1.6908 -5.7087 16 8 5.2906 2.4801 -5.2029 17 6 4.2943 1.7089 -7.1984 18 16 5.3044 3.0111 -7.9468 19 6 4.8549 2.8126 -9.6389 20 1 4.1447 2.0501 -9.9231 21 6 5.4135 3.6360 -10.6066 22 7 6.2787 4.5656 -10.2601 23 14 4.9375 3.4250 -12.4006 24 1 3.9543 2.3191 -12.5251 25 1 4.3317 4.6841 -12.9033 26 1 6.1476 3.1045 -13.1994 27 6 3.4758 -0.5163 -1.3540 28 1 -0.3633 -1.0238 0.0884 29 1 -0.3633 0.5884 0.8425 30 1 -0.3633 0.4354 -0.9309 31 1 1.1493 0.5388 2.5436 32 1 2.9413 -1.7156 3.4743 33 1 0.1863 -0.7938 4.6559 34 1 1.2958 -2.0827 5.3696 35 1 3.1431 -0.3601 5.6089 36 1 2.0343 0.9290 4.8950 37 1 1.0404 -0.1903 -3.0522 38 1 1.7977 1.2123 -2.1827 39 1 3.2295 -1.2475 -3.4323 40 1 3.8105 1.7444 -3.0681 41 1 5.1434 0.5850 -3.2860 42 1 3.2543 0.1657 -5.3431 43 1 4.5741 0.7437 -7.6204 44 1 3.2414 1.9034 -7.4031 45 1 6.6688 5.1413 -10.9365 46 1 3.8608 0.3739 -0.8565 47 1 4.0490 -1.4126 -1.1172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494526653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:49 Heat of formation + Delta-G solvation = -8.297136 kcal Electronic energy + Delta-G solvation = -26114.856143 eV Core-core repulsion = 22233.027959 eV Total energy + Delta-G solvation = -3881.828184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26846 -39.76120 -38.89928 -37.45673 -34.87736 -33.83858 -32.48653 -32.42001 -30.05646 -28.08492 -26.58623 -25.52308 -25.02795 -23.87344 -22.96617 -21.84546 -20.65084 -20.62535 -19.82414 -17.92861 -17.68227 -17.21749 -16.39791 -16.31837 -16.15830 -15.49414 -15.38710 -14.96083 -14.91748 -14.79851 -14.63457 -14.06583 -13.74472 -13.55413 -13.26022 -13.10153 -12.99586 -12.83088 -12.57255 -12.51288 -12.32241 -12.16759 -11.89350 -11.72653 -11.49246 -11.31225 -11.08865 -11.06743 -11.01303 -10.77025 -10.74283 -10.09826 -9.80140 -9.44410 -9.31525 -9.22111 -9.07300 -8.86520 -8.22405 -6.49362 -6.21414 -3.91745 2.13282 2.45162 3.03343 3.11172 3.21969 3.28555 3.33106 3.35015 3.53967 3.68926 4.03851 4.13375 4.20089 4.20898 4.36161 4.41278 4.42823 4.48877 4.55603 4.78121 4.95659 5.00666 5.05305 5.11467 5.13959 5.18260 5.22980 5.25016 5.31922 5.37125 5.45234 5.49238 5.52240 5.60398 5.62821 5.75532 5.88331 5.91097 5.96986 5.98528 6.15454 6.52530 6.63239 6.96975 7.60450 7.72416 7.76597 8.35968 8.62600 9.24189 10.86099 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036903 B = 0.001492 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.558953 B =18764.389513 C =19026.959587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 H 0.076 0.924 4 C 0.524 3.476 5 O -0.516 6.516 6 N -0.705 5.705 7 C 0.080 3.920 8 C -0.193 4.193 9 C -0.190 4.190 10 N -0.448 5.448 11 C 0.002 3.998 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.017 3.983 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.069 0.931 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.206 -10.950 28.477 33.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 H 0.094 0.906 4 C 0.310 3.690 5 O -0.390 6.390 6 N -0.357 5.357 7 C -0.026 4.026 8 C -0.232 4.232 9 C -0.228 4.228 10 N -0.170 5.170 11 C -0.126 4.126 12 C -0.146 4.146 13 C 0.008 3.992 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.394 6.394 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.113 4.113 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.235 0.765 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.601 -10.875 29.243 33.648 hybrid contribution -1.542 -0.023 -1.639 2.250 sum -14.143 -10.898 27.604 32.875 Atomic orbital electron populations 1.21718 0.91568 1.03448 1.02932 1.22282 0.98184 0.96911 0.91104 0.90619 1.20445 0.79957 0.84647 0.83978 1.90719 1.36589 1.25336 1.86328 1.45390 1.53863 1.31671 1.04759 1.21598 1.00940 0.99602 0.80420 1.23439 0.95885 1.01366 1.02502 1.23397 1.01731 0.97648 1.00004 1.68992 1.08168 1.39845 1.00040 1.24030 0.98603 0.96996 0.93013 1.23011 0.95343 0.99787 0.96463 1.21224 0.99729 0.97579 0.80647 1.45983 1.47920 1.38162 1.07125 1.20316 0.79555 0.79738 0.88676 1.90701 1.35124 1.38694 1.74832 1.23528 1.06087 1.06960 0.93812 1.85396 1.55322 1.39256 1.03532 1.22914 1.30859 1.22394 0.92134 0.90864 1.24993 0.94593 0.94485 0.99516 1.70035 1.27337 1.18731 1.34213 0.86115 0.78422 0.78189 0.82763 1.19608 1.20586 1.20564 1.23741 0.90875 1.02445 0.94205 0.91140 0.91791 0.90956 0.76474 0.84455 0.88483 0.87924 0.87768 0.88420 0.89078 0.90752 0.87039 0.91631 0.91134 0.76708 0.89188 0.89226 0.92253 0.91256 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.22 37.16 0.34 -0.39 16 2 C 0.03 0.20 2.08 -68.87 -0.14 0.05 16 3 H 0.08 0.45 7.56 -51.93 -0.39 0.06 16 4 C 0.52 4.63 6.95 -10.99 -0.08 4.55 16 5 O -0.52 -6.63 14.99 5.56 0.08 -6.55 16 6 N -0.71 -4.23 5.47 -53.81 -0.29 -4.52 16 7 C 0.08 0.49 6.43 -67.93 -0.44 0.05 16 8 C -0.19 -0.83 10.46 -26.69 -0.28 -1.11 16 9 C -0.19 -0.77 10.46 -26.70 -0.28 -1.05 16 10 N -0.45 -3.97 5.82 -238.01 -1.39 -5.36 16 11 C 0.00 0.02 6.52 -7.56 -0.05 -0.03 16 12 C -0.13 -1.07 4.09 -90.09 -0.37 -1.44 16 13 C 0.13 1.48 5.58 -4.04 -0.02 1.46 16 14 N -0.74 -9.49 5.56 -60.29 -0.33 -9.83 16 15 C 0.53 9.80 7.85 -10.99 -0.09 9.71 16 16 O -0.52 -11.76 15.86 5.56 0.09 -11.68 16 17 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 23 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.02 0.15 6.03 -7.55 -0.05 0.11 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 30 H 0.07 0.36 7.57 -51.93 -0.39 -0.03 16 31 H 0.40 1.34 8.34 -40.82 -0.34 1.00 16 32 H 0.14 1.07 7.40 -51.93 -0.38 0.68 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.53 7.43 -51.93 -0.39 0.14 16 39 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.77 7.81 -51.93 -0.41 0.36 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 0.60 7.74 -51.93 -0.40 0.20 16 47 H 0.10 1.01 8.00 -51.93 -0.42 0.59 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -36.98 404.74 -10.91 -47.88 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.64 Total: 0.79 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.02 Total: -3.88 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -1.28 Total: -45.16 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.17 Total: -18.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.98 -10.91 -47.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494526653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.588 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds