Wall clock time and date at job start Wed Apr 1 2020 00:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 C 1.50694 * 109.47337 * 120.00316 * 2 1 3 5 5 O 1.21279 * 120.00167 * 119.99880 * 4 2 1 6 6 N 1.34779 * 120.00074 * 300.00325 * 4 2 1 7 7 C 1.46499 * 120.00355 * 180.02562 * 6 4 2 8 8 C 1.53006 * 117.49921 * 223.74670 * 7 6 4 9 9 C 1.52996 * 117.50026 * 155.08722 * 7 6 4 10 10 N 1.46901 * 109.47105 * 240.00272 * 2 1 3 11 11 C 1.47478 * 110.99892 * 74.42584 * 10 2 1 12 12 C 1.53511 * 87.93383 * 138.70533 * 11 10 2 13 13 C 1.53004 * 114.16727 * 220.33236 * 12 11 10 14 14 N 1.46507 * 109.46621 * 268.83578 * 13 12 11 15 15 C 1.34775 * 119.99850 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00007 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99997 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47219 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00301 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00518 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99616 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00364 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47122 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47045 * 119.99542 * 23 21 19 26 26 H 1.48493 * 109.47331 * 239.99899 * 23 21 19 27 27 C 1.47482 * 110.99691 * 170.39148 * 10 2 1 28 28 H 1.08994 * 109.47075 * 184.93263 * 1 2 3 29 29 H 1.08994 * 109.47177 * 304.93159 * 1 2 3 30 30 H 1.09002 * 109.46974 * 64.93473 * 1 2 3 31 31 H 0.97003 * 119.99752 * 359.97438 * 6 4 2 32 32 H 1.09003 * 115.54961 * 9.41365 * 7 6 4 33 33 H 1.08996 * 117.49611 * 359.97438 * 8 7 6 34 34 H 1.08996 * 117.50055 * 145.02001 * 8 7 6 35 35 H 1.09001 * 117.49962 * 214.97815 * 9 7 6 36 36 H 1.08999 * 117.50107 * 359.97006 * 9 7 6 37 37 H 1.09004 * 113.47269 * 253.46672 * 11 10 2 38 38 H 1.09002 * 113.47824 * 23.93329 * 11 10 2 39 39 H 1.08992 * 114.17636 * 87.61979 * 12 11 10 40 40 H 1.08998 * 109.47628 * 28.83335 * 13 12 11 41 41 H 1.08997 * 109.47492 * 148.83806 * 13 12 11 42 42 H 0.96996 * 119.99909 * 359.97438 * 14 13 12 43 43 H 1.08996 * 109.47582 * 300.00129 * 17 15 14 44 44 H 1.09004 * 109.47083 * 59.99905 * 17 15 14 45 45 H 0.97004 * 119.99375 * 180.02562 * 22 21 19 46 46 H 1.08996 * 113.48379 * 336.06702 * 27 10 2 47 47 H 1.09000 * 113.46928 * 106.47399 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.2029 -1.1620 4.7937 9 6 2.3174 -0.1227 4.9380 10 7 2.0197 -0.6924 -1.1995 11 6 1.8473 0.1455 -2.4008 12 6 3.2365 -0.3214 -2.8578 13 6 4.0905 0.7793 -3.4904 14 7 3.8693 0.7973 -4.9385 15 6 4.5213 1.6908 -5.7087 16 8 5.2906 2.4801 -5.2029 17 6 4.2943 1.7089 -7.1984 18 16 5.3044 3.0111 -7.9468 19 6 4.8549 2.8126 -9.6389 20 1 4.1447 2.0501 -9.9231 21 6 5.4135 3.6360 -10.6066 22 7 6.2787 4.5656 -10.2601 23 14 4.9375 3.4250 -12.4006 24 1 3.9543 2.3191 -12.5251 25 1 4.3317 4.6841 -12.9033 26 1 6.1476 3.1045 -13.1994 27 6 3.4758 -0.5163 -1.3540 28 1 -0.3633 -1.0238 0.0884 29 1 -0.3633 0.5884 0.8425 30 1 -0.3633 0.4354 -0.9309 31 1 1.1493 0.5388 2.5436 32 1 2.9413 -1.7156 3.4743 33 1 0.1863 -0.7938 4.6559 34 1 1.2958 -2.0827 5.3696 35 1 3.1431 -0.3601 5.6089 36 1 2.0343 0.9290 4.8950 37 1 1.0404 -0.1903 -3.0522 38 1 1.7977 1.2123 -2.1827 39 1 3.2295 -1.2475 -3.4323 40 1 3.8105 1.7444 -3.0681 41 1 5.1434 0.5850 -3.2860 42 1 3.2543 0.1657 -5.3431 43 1 4.5741 0.7437 -7.6204 44 1 3.2414 1.9034 -7.4031 45 1 6.6688 5.1413 -10.9365 46 1 3.8608 0.3739 -0.8565 47 1 4.0490 -1.4126 -1.1172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494526653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:48 Heat of formation + Delta-G solvation = -37.837309 kcal Electronic energy + Delta-G solvation = -26116.137101 eV Core-core repulsion = 22233.027959 eV Total energy + Delta-G solvation = -3883.109142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94184 -40.65383 -40.06145 -37.98415 -35.96068 -34.59937 -34.55961 -33.12982 -31.36799 -29.09805 -27.65313 -27.22831 -25.76532 -24.58501 -23.29402 -22.37621 -21.87394 -21.24566 -20.75716 -19.76344 -18.38648 -17.93179 -17.65624 -17.28406 -16.97420 -16.86858 -16.55937 -16.11891 -16.07685 -15.68341 -15.49527 -15.28203 -14.68310 -14.57588 -14.50840 -14.27760 -13.74526 -13.59962 -13.47393 -13.28449 -13.14518 -13.11752 -12.90917 -12.80566 -12.60324 -12.51184 -12.36654 -12.20175 -11.98513 -11.68548 -11.54446 -11.45515 -11.14673 -10.93944 -10.76487 -10.25362 -10.11620 -9.92361 -9.75985 -8.65071 -8.33693 -6.11411 1.28786 1.42432 1.48687 1.50248 1.59754 1.63902 1.93846 2.26432 2.31019 2.91374 2.96559 3.00753 3.29466 3.38858 3.53452 3.73598 3.79564 3.93212 3.97162 4.03065 4.04324 4.06873 4.20019 4.22594 4.32700 4.36263 4.54246 4.54790 4.70153 4.73416 4.74732 4.77019 4.81365 4.84414 4.88070 5.00521 5.10371 5.18578 5.19768 5.28867 5.43620 5.47448 5.47815 5.91974 6.21412 6.47745 6.53928 7.08027 7.19211 7.27252 8.75808 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036903 B = 0.001492 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.558953 B =18764.389513 C =19026.959587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.028 3.972 3 H 0.093 0.907 4 C 0.519 3.481 5 O -0.566 6.566 6 N -0.691 5.691 7 C 0.052 3.948 8 C -0.183 4.183 9 C -0.174 4.174 10 N -0.465 5.465 11 C 0.010 3.990 12 C -0.114 4.114 13 C 0.136 3.864 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.017 3.983 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.416 0.584 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.418 0.582 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.072 0.928 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.879 -11.452 28.635 35.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 H 0.110 0.890 4 C 0.305 3.695 5 O -0.444 6.444 6 N -0.342 5.342 7 C -0.054 4.054 8 C -0.221 4.221 9 C -0.213 4.213 10 N -0.188 5.188 11 C -0.118 4.118 12 C -0.133 4.133 13 C 0.012 3.988 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.112 4.112 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.253 0.747 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.255 0.745 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.342 -11.399 29.448 35.106 hybrid contribution -0.747 0.056 -1.500 1.676 sum -16.089 -11.342 27.948 34.185 Atomic orbital electron populations 1.21723 0.89877 1.03083 1.04447 1.22373 0.99392 0.97090 0.89592 0.88972 1.20836 0.79328 0.84141 0.85150 1.90697 1.39014 1.27633 1.87058 1.45268 1.53178 1.31715 1.04051 1.21586 1.02067 1.00553 0.81189 1.23497 0.96212 1.01717 1.00717 1.23466 1.01661 0.98185 0.97943 1.68964 1.07625 1.40932 1.01246 1.24031 0.97958 0.97372 0.92468 1.22883 0.95613 0.99030 0.95772 1.21300 0.99725 0.98598 0.79222 1.45712 1.46462 1.36533 1.07615 1.20066 0.79565 0.80176 0.88299 1.90692 1.37574 1.41047 1.75361 1.23374 1.05519 1.04636 0.94537 1.85579 1.58363 1.43641 1.05065 1.23248 1.31025 1.22717 0.92324 0.89866 1.26119 0.94276 0.93878 1.04835 1.70197 1.28741 1.19884 1.36020 0.84906 0.78401 0.78661 0.75984 1.17989 1.19927 1.20032 1.23665 0.91345 1.01645 0.94569 0.92607 0.89305 0.90224 0.74714 0.86973 0.87393 0.87616 0.87299 0.87091 0.87894 0.89843 0.86350 0.91752 0.92353 0.74506 0.87256 0.87000 0.92026 0.91030 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.22 71.98 0.66 -0.44 16 2 C 0.03 0.35 2.08 44.17 0.09 0.45 16 3 H 0.09 0.88 7.56 -2.39 -0.02 0.86 16 4 C 0.52 9.02 6.95 87.65 0.61 9.63 16 5 O -0.57 -15.18 14.99 -3.03 -0.05 -15.23 16 6 N -0.69 -7.63 5.47 -442.53 -2.42 -10.05 16 7 C 0.05 0.62 6.43 44.99 0.29 0.91 16 8 C -0.18 -1.31 10.46 30.62 0.32 -0.99 16 9 C -0.17 -1.14 10.46 30.62 0.32 -0.82 16 10 N -0.46 -7.69 5.82 -906.93 -5.28 -12.98 16 11 C 0.01 0.13 6.52 83.57 0.55 0.67 16 12 C -0.11 -1.75 4.09 -10.45 -0.04 -1.79 16 13 C 0.14 2.85 5.58 86.38 0.48 3.33 16 14 N -0.71 -16.86 5.56 -463.05 -2.57 -19.43 16 15 C 0.53 19.20 7.85 87.66 0.69 19.89 16 16 O -0.57 -26.09 15.86 -3.02 -0.05 -26.14 16 17 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 23 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.02 0.31 6.03 83.57 0.50 0.81 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.27 7.71 -2.39 -0.02 0.25 16 30 H 0.08 0.57 7.57 -2.39 -0.02 0.55 16 31 H 0.42 1.90 8.34 -92.71 -0.77 1.13 16 32 H 0.11 1.91 7.40 -2.39 -0.02 1.89 16 33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 0.94 7.43 -2.39 -0.02 0.92 16 39 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.42 7.81 -2.39 -0.02 1.40 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.42 7.00 8.47 -92.71 -0.79 6.21 16 43 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 44 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 45 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.07 1.22 7.74 -2.39 -0.02 1.20 16 47 H 0.08 1.67 8.00 -2.39 -0.02 1.66 16 Total: -1.00 -83.73 404.74 -3.77 -87.50 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.57 Total: 18.26 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.02 Total: -2.08 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -9.99 Total: -98.14 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.09 Total: -41.36 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -83.73 -3.77 -87.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494526653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.663 kcal (2) G-P(sol) polarization free energy of solvation -83.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds