Wall clock time and date at job start Wed Apr 1 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47018 * 2 1 4 4 C 1.46496 * 120.00596 * 89.99796 * 3 2 1 5 5 C 1.52998 * 109.47171 * 270.00124 * 4 3 2 6 6 N 1.46906 * 109.47020 * 179.97438 * 5 4 3 7 7 C 1.46902 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46656 * 179.97438 * 7 6 5 9 9 N 1.30256 * 125.61540 * 89.69788 * 8 7 6 10 10 C 1.34476 * 108.69903 * 179.83536 * 9 8 7 11 11 C 1.50705 * 126.16614 * 180.16400 * 10 9 8 12 12 C 1.34329 * 107.66893 * 0.42091 * 10 9 8 13 13 C 1.50699 * 126.44178 * 179.72105 * 12 10 9 14 14 O 1.33964 * 125.62009 * 269.99899 * 8 7 6 15 15 C 1.34781 * 119.99985 * 269.99856 * 3 2 1 16 16 O 1.21279 * 120.00451 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99666 * 0.02562 * 15 3 2 18 18 S 1.80996 * 109.47132 * 180.02562 * 17 15 3 19 19 C 1.76195 * 100.00318 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99613 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00054 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00360 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99565 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47122 * 60.00100 * 23 21 19 25 25 H 1.48500 * 109.46463 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47092 * 299.99833 * 23 21 19 27 27 H 1.08995 * 109.47134 * 300.00352 * 1 2 3 28 28 H 1.09000 * 109.46743 * 60.00490 * 1 2 3 29 29 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47134 * 239.99648 * 2 1 3 31 31 H 1.09000 * 109.46743 * 119.99510 * 2 1 3 32 32 H 1.08995 * 109.47879 * 149.99519 * 4 3 2 33 33 H 1.09008 * 109.46699 * 30.00069 * 4 3 2 34 34 H 1.09002 * 109.47142 * 59.99877 * 5 4 3 35 35 H 1.09000 * 109.46991 * 299.99621 * 5 4 3 36 36 H 1.00896 * 111.00309 * 56.04370 * 6 5 4 37 37 H 1.08990 * 109.47358 * 299.99539 * 7 6 5 38 38 H 1.09004 * 109.47457 * 60.00221 * 7 6 5 39 39 H 1.08995 * 109.47449 * 270.30523 * 11 10 9 40 40 H 1.09005 * 109.46979 * 30.30378 * 11 10 9 41 41 H 1.08992 * 109.47045 * 150.29891 * 11 10 9 42 42 H 1.09001 * 109.47144 * 180.02562 * 13 12 10 43 43 H 1.08996 * 109.47566 * 300.00133 * 13 12 10 44 44 H 1.09004 * 109.46713 * 60.00641 * 13 12 10 45 45 H 1.09000 * 109.46861 * 299.99789 * 17 15 3 46 46 H 1.08992 * 109.47199 * 59.99818 * 17 15 3 47 47 H 0.96994 * 120.00328 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2686 5 6 0.9875 2.7932 1.7102 6 7 1.2322 3.4853 2.9827 7 6 0.0270 4.1911 3.4382 8 6 0.3157 4.8870 4.7435 9 7 0.7727 6.1000 4.8715 10 6 0.9005 6.3765 6.1813 11 6 1.3933 7.6720 6.7728 12 6 0.5151 5.2878 6.8674 13 6 0.4955 5.1349 8.3665 14 8 0.1498 4.3580 5.9630 15 6 2.2430 2.0166 -1.1672 16 8 2.6476 3.1598 -1.1673 17 6 1.9913 1.3062 -2.4723 18 16 2.3842 2.4147 -3.8481 19 6 2.0108 1.3587 -5.2083 20 1 1.6556 0.3545 -5.0305 21 6 2.1731 1.8176 -6.5081 22 7 2.6054 3.0418 -6.7248 23 14 1.7765 0.6981 -7.9501 24 1 0.3482 0.2969 -7.8870 25 1 2.0326 1.4202 -9.2222 26 1 2.6340 -0.5126 -7.8873 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0644 2.7986 1.1384 33 1 2.5506 1.3452 2.0283 34 1 0.1856 2.0665 1.8406 35 1 0.6994 3.5198 0.9505 36 1 2.0141 4.1183 2.9055 37 1 -0.2670 4.9277 2.6907 38 1 -0.7820 3.4745 3.5801 39 1 2.4759 7.6285 6.8920 40 1 1.1338 8.4966 6.1088 41 1 0.9267 7.8282 7.7453 42 1 0.1345 4.1395 8.6255 43 1 1.5036 5.2688 8.7586 44 1 -0.1656 5.8856 8.7996 45 1 2.6212 0.4185 -2.5302 46 1 0.9433 1.0124 -2.5299 47 1 2.7192 3.3623 -7.6332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497352109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:09 Heat of formation + Delta-G solvation = -18.311634 kcal Electronic energy + Delta-G solvation = -26344.616973 eV Core-core repulsion = 22462.354528 eV Total energy + Delta-G solvation = -3882.262445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61811 -39.67567 -36.97686 -35.65220 -35.44918 -33.42817 -32.42985 -31.45212 -29.95722 -29.56681 -28.73645 -26.44596 -25.46239 -24.29086 -23.31083 -22.37599 -21.91036 -20.92544 -19.15664 -17.70904 -17.17625 -17.13062 -16.72795 -16.12030 -15.93520 -15.27793 -14.95980 -14.80659 -14.61416 -14.38299 -13.92324 -13.83761 -13.71197 -13.61965 -13.41937 -13.40180 -13.24663 -13.08487 -12.85799 -12.68104 -12.52613 -12.27453 -12.16769 -11.80757 -11.77546 -11.37610 -11.21479 -11.04407 -11.04002 -10.86443 -10.76050 -10.74654 -9.81422 -9.38821 -9.05928 -8.98284 -8.80386 -8.58242 -8.22761 -6.50178 -6.21370 -3.92187 1.09843 2.25851 2.37531 2.88570 3.04106 3.23290 3.24782 3.28804 3.52666 3.64428 4.12373 4.20496 4.36002 4.49028 4.64769 4.72619 4.86105 4.91318 4.93068 4.94442 5.04981 5.08209 5.13494 5.16793 5.22683 5.24776 5.31249 5.33058 5.41668 5.43260 5.54093 5.66600 5.69384 5.75093 5.78647 5.79170 5.91993 5.93016 6.03743 6.06090 6.22185 6.43244 6.68501 6.93833 7.47743 7.52580 7.59320 8.34968 8.54685 9.23692 10.85972 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.001762 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.264910 B =15883.607535 C =16667.501099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.619 5.619 4 C 0.122 3.878 5 C 0.042 3.958 6 N -0.684 5.684 7 C 0.157 3.843 8 C 0.199 3.801 9 N -0.474 5.474 10 C -0.017 4.017 11 C -0.070 4.070 12 C -0.052 4.052 13 C -0.066 4.066 14 O -0.193 6.193 15 C 0.534 3.466 16 O -0.515 6.515 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.351 0.649 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 -0.841 29.557 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.355 5.355 4 C -0.002 4.002 5 C -0.087 4.087 6 N -0.318 5.318 7 C 0.027 3.973 8 C -0.009 4.009 9 N -0.204 5.204 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.106 4.106 13 C -0.123 4.123 14 O -0.079 6.079 15 C 0.322 3.678 16 O -0.389 6.389 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.170 0.830 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.237 0.781 29.288 29.763 hybrid contribution -0.989 -1.817 -1.002 2.299 sum -6.226 -1.037 28.286 28.982 Atomic orbital electron populations 1.22304 0.96065 1.02266 1.02678 1.21566 0.94450 0.82332 1.03310 1.47960 1.67880 1.14265 1.05409 1.21228 0.96771 0.97301 0.84923 1.22471 0.99441 0.98030 0.88798 1.60441 1.06132 1.33842 1.31340 1.20191 0.94445 0.96613 0.86078 1.25947 0.99541 0.89004 0.86380 1.70367 1.16828 1.13989 1.19212 1.21533 1.05404 0.98104 0.88657 1.20102 1.01111 0.91530 0.99997 1.23213 1.05448 0.88596 0.93309 1.20252 1.03831 1.04128 0.84042 1.84399 1.65713 1.41451 1.16328 1.20378 0.76318 0.86498 0.84655 1.90697 1.43836 1.17512 1.86823 1.23582 1.04756 1.04525 0.97224 1.85399 1.86844 1.17941 0.93360 1.22815 1.51889 1.01476 0.92224 0.90999 1.24985 0.94657 0.95528 0.98353 1.70003 1.42863 1.15629 1.21761 0.86234 0.78946 0.80052 0.80333 1.19945 1.20810 1.19934 0.92370 0.91927 0.91578 0.89885 0.90490 0.89866 0.89956 0.90292 0.93674 0.83000 0.90297 0.88040 0.90678 0.90555 0.90833 0.90351 0.89379 0.89466 0.89281 0.89219 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 37.16 0.38 -1.27 16 2 C 0.11 1.10 5.98 -4.04 -0.02 1.08 16 3 N -0.62 -8.42 2.47 -173.69 -0.43 -8.85 16 4 C 0.12 1.43 5.71 -4.05 -0.02 1.41 16 5 C 0.04 0.46 6.01 -3.82 -0.02 0.43 16 6 N -0.68 -6.97 6.49 -115.05 -0.75 -7.72 16 7 C 0.16 1.50 6.31 -4.97 -0.03 1.46 16 8 C 0.20 2.28 7.85 -12.94 -0.10 2.17 16 9 N -0.47 -5.97 11.29 -7.35 -0.08 -6.06 16 10 C -0.02 -0.18 7.11 -82.81 -0.59 -0.76 16 11 C -0.07 -0.48 10.22 36.01 0.37 -0.12 16 12 C -0.05 -0.49 7.39 -35.69 -0.26 -0.76 16 13 C -0.07 -0.32 9.96 36.01 0.36 0.04 16 14 O -0.19 -2.17 10.78 5.36 0.06 -2.11 16 15 C 0.53 9.96 7.69 -10.98 -0.08 9.88 16 16 O -0.51 -11.60 15.44 5.56 0.09 -11.51 16 17 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.06 0.51 6.26 -51.93 -0.33 0.18 16 28 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.89 6.44 -51.93 -0.33 0.55 16 31 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 32 H 0.08 1.14 7.42 -51.93 -0.39 0.75 16 33 H 0.08 0.80 7.89 -51.92 -0.41 0.39 16 34 H 0.08 0.76 6.26 -51.93 -0.33 0.44 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.35 3.81 8.72 -39.29 -0.34 3.46 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.33 7.89 -51.93 -0.41 -0.08 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 1.67 7.40 -51.91 -0.38 1.28 16 46 H 0.09 1.68 7.18 -51.92 -0.37 1.30 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -36.07 405.28 -8.60 -44.67 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.42 Total: 0.66 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 0.33 Total: -2.19 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.53 Total: -48.05 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.14 Total: -13.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.07 -8.60 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497352109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.355 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds