Wall clock time and date at job start Wed Apr 1 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47018 * 2 1 4 4 C 1.46496 * 120.00596 * 89.99796 * 3 2 1 5 5 C 1.52998 * 109.47171 * 270.00124 * 4 3 2 6 6 N 1.46906 * 109.47020 * 179.97438 * 5 4 3 7 7 C 1.46902 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46656 * 179.97438 * 7 6 5 9 9 N 1.30256 * 125.61540 * 89.69788 * 8 7 6 10 10 C 1.34476 * 108.69903 * 179.83536 * 9 8 7 11 11 C 1.50705 * 126.16614 * 180.16400 * 10 9 8 12 12 C 1.34329 * 107.66893 * 0.42091 * 10 9 8 13 13 C 1.50699 * 126.44178 * 179.72105 * 12 10 9 14 14 O 1.33964 * 125.62009 * 269.99899 * 8 7 6 15 15 C 1.34781 * 119.99985 * 269.99856 * 3 2 1 16 16 O 1.21279 * 120.00451 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99666 * 0.02562 * 15 3 2 18 18 S 1.80996 * 109.47132 * 180.02562 * 17 15 3 19 19 C 1.76195 * 100.00318 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99613 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00054 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00360 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99565 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47122 * 60.00100 * 23 21 19 25 25 H 1.48500 * 109.46463 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47092 * 299.99833 * 23 21 19 27 27 H 1.08995 * 109.47134 * 300.00352 * 1 2 3 28 28 H 1.09000 * 109.46743 * 60.00490 * 1 2 3 29 29 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47134 * 239.99648 * 2 1 3 31 31 H 1.09000 * 109.46743 * 119.99510 * 2 1 3 32 32 H 1.08995 * 109.47879 * 149.99519 * 4 3 2 33 33 H 1.09008 * 109.46699 * 30.00069 * 4 3 2 34 34 H 1.09002 * 109.47142 * 59.99877 * 5 4 3 35 35 H 1.09000 * 109.46991 * 299.99621 * 5 4 3 36 36 H 1.00896 * 111.00309 * 56.04370 * 6 5 4 37 37 H 1.08990 * 109.47358 * 299.99539 * 7 6 5 38 38 H 1.09004 * 109.47457 * 60.00221 * 7 6 5 39 39 H 1.08995 * 109.47449 * 270.30523 * 11 10 9 40 40 H 1.09005 * 109.46979 * 30.30378 * 11 10 9 41 41 H 1.08992 * 109.47045 * 150.29891 * 11 10 9 42 42 H 1.09001 * 109.47144 * 180.02562 * 13 12 10 43 43 H 1.08996 * 109.47566 * 300.00133 * 13 12 10 44 44 H 1.09004 * 109.46713 * 60.00641 * 13 12 10 45 45 H 1.09000 * 109.46861 * 299.99789 * 17 15 3 46 46 H 1.08992 * 109.47199 * 59.99818 * 17 15 3 47 47 H 0.96994 * 120.00328 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2686 5 6 0.9875 2.7932 1.7102 6 7 1.2322 3.4853 2.9827 7 6 0.0270 4.1911 3.4382 8 6 0.3157 4.8870 4.7435 9 7 0.7727 6.1000 4.8715 10 6 0.9005 6.3765 6.1813 11 6 1.3933 7.6720 6.7728 12 6 0.5151 5.2878 6.8674 13 6 0.4955 5.1349 8.3665 14 8 0.1498 4.3580 5.9630 15 6 2.2430 2.0166 -1.1672 16 8 2.6476 3.1598 -1.1673 17 6 1.9913 1.3062 -2.4723 18 16 2.3842 2.4147 -3.8481 19 6 2.0108 1.3587 -5.2083 20 1 1.6556 0.3545 -5.0305 21 6 2.1731 1.8176 -6.5081 22 7 2.6054 3.0418 -6.7248 23 14 1.7765 0.6981 -7.9501 24 1 0.3482 0.2969 -7.8870 25 1 2.0326 1.4202 -9.2222 26 1 2.6340 -0.5126 -7.8873 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0644 2.7986 1.1384 33 1 2.5506 1.3452 2.0283 34 1 0.1856 2.0665 1.8406 35 1 0.6994 3.5198 0.9505 36 1 2.0141 4.1183 2.9055 37 1 -0.2670 4.9277 2.6907 38 1 -0.7820 3.4745 3.5801 39 1 2.4759 7.6285 6.8920 40 1 1.1338 8.4966 6.1088 41 1 0.9267 7.8282 7.7453 42 1 0.1345 4.1395 8.6255 43 1 1.5036 5.2688 8.7586 44 1 -0.1656 5.8856 8.7996 45 1 2.6212 0.4185 -2.5302 46 1 0.9433 1.0124 -2.5299 47 1 2.7192 3.3623 -7.6332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497352109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:08 Heat of formation + Delta-G solvation = -45.627726 kcal Electronic energy + Delta-G solvation = -26345.801487 eV Core-core repulsion = 22462.354528 eV Total energy + Delta-G solvation = -3883.446960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.38698 -41.00365 -37.98708 -36.77681 -36.21710 -34.58728 -34.12661 -32.38131 -31.15717 -30.22537 -29.75262 -27.74882 -27.22174 -25.00208 -24.31179 -23.30834 -22.70364 -21.67614 -20.57394 -19.51426 -18.27177 -17.93908 -17.83339 -17.26029 -16.89390 -16.87651 -16.35683 -15.99007 -15.94961 -15.24672 -15.12756 -14.81739 -14.67446 -14.51689 -14.37180 -14.20893 -14.15299 -13.99933 -13.77266 -13.47650 -13.40194 -13.23202 -13.19607 -12.93048 -12.90469 -12.84934 -12.64827 -12.61364 -12.26803 -12.01409 -11.80730 -11.66170 -11.55441 -11.12779 -10.90084 -10.26960 -9.84724 -9.77149 -9.48598 -8.67606 -8.34434 -6.13085 0.34586 1.24945 1.43445 1.43939 1.49581 1.56292 1.57491 1.65324 2.07729 2.27685 2.86364 2.99567 3.21766 3.29944 3.68611 3.73908 3.85276 3.94161 4.05403 4.11532 4.17119 4.21390 4.24400 4.38322 4.41325 4.46303 4.48879 4.59914 4.62852 4.64524 4.76200 4.76552 4.80930 4.82535 4.97319 4.98787 5.04524 5.07910 5.15596 5.39632 5.40321 5.41275 5.51245 5.70695 6.01948 6.19339 6.27966 6.70074 7.06494 7.14133 8.74530 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.001762 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.264910 B =15883.607535 C =16667.501099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.121 3.879 5 C 0.055 3.945 6 N -0.678 5.678 7 C 0.159 3.841 8 C 0.184 3.816 9 N -0.506 5.506 10 C -0.045 4.045 11 C -0.067 4.067 12 C -0.050 4.050 13 C -0.065 4.065 14 O -0.204 6.204 15 C 0.532 3.468 16 O -0.565 6.565 17 C -0.123 4.123 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.261 1.261 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.015 0.985 36 H 0.345 0.655 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 -3.547 31.699 32.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.336 5.336 4 C -0.002 4.002 5 C -0.075 4.075 6 N -0.311 5.311 7 C 0.030 3.970 8 C -0.023 4.023 9 N -0.237 5.237 10 C -0.165 4.165 11 C -0.125 4.125 12 C -0.103 4.103 13 C -0.121 4.121 14 O -0.090 6.090 15 C 0.319 3.681 16 O -0.443 6.443 17 C -0.274 4.274 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.034 0.966 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.329 -1.971 31.488 32.178 hybrid contribution -0.667 -0.996 -1.461 1.890 sum -6.996 -2.967 30.026 30.973 Atomic orbital electron populations 1.22268 0.95068 1.03603 1.01967 1.21929 0.95239 0.80170 1.05063 1.47938 1.65995 1.15370 1.04346 1.21371 0.96615 0.97703 0.84470 1.22323 0.99332 0.97633 0.88236 1.60480 1.06266 1.33786 1.30535 1.20244 0.94525 0.96868 0.85376 1.26154 1.00112 0.89065 0.86967 1.70347 1.17612 1.14840 1.20936 1.22126 1.06376 0.99851 0.88135 1.20205 1.01683 0.89632 1.00932 1.24082 1.03616 0.87772 0.94876 1.20508 1.05508 1.05291 0.80827 1.84396 1.65945 1.42132 1.16557 1.20166 0.76392 0.85895 0.85613 1.90683 1.46526 1.19556 1.87524 1.23397 1.05910 1.03059 0.95031 1.85591 1.87630 1.22140 0.97378 1.23160 1.51841 1.01775 0.92625 0.89875 1.26134 0.94137 0.97152 1.01690 1.70178 1.44196 1.17906 1.22507 0.85009 0.79328 0.77837 0.75858 1.18596 1.20450 1.18570 0.91435 0.94290 0.89215 0.90033 0.86920 0.92187 0.86689 0.88290 0.96621 0.83720 0.90830 0.86032 0.90041 0.91499 0.88012 0.89684 0.87594 0.87313 0.87489 0.87571 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 71.98 0.74 -1.97 16 2 C 0.10 1.71 5.98 86.38 0.52 2.22 16 3 N -0.60 -15.56 2.47 -821.82 -2.03 -17.60 16 4 C 0.12 2.72 5.71 86.38 0.49 3.21 16 5 C 0.05 1.14 6.01 86.30 0.52 1.65 16 6 N -0.68 -13.52 6.49 -517.91 -3.36 -16.89 16 7 C 0.16 3.02 6.31 85.56 0.54 3.56 16 8 C 0.18 4.24 7.85 88.34 0.69 4.93 16 9 N -0.51 -13.08 11.29 -291.97 -3.30 -16.37 16 10 C -0.05 -0.92 7.11 41.26 0.29 -0.63 16 11 C -0.07 -0.87 10.22 71.24 0.73 -0.14 16 12 C -0.05 -0.89 7.39 24.79 0.18 -0.70 16 13 C -0.07 -0.46 9.96 71.24 0.71 0.25 16 14 O -0.20 -4.46 10.78 -3.72 -0.04 -4.50 16 15 C 0.53 20.06 7.69 87.66 0.67 20.73 16 16 O -0.56 -26.62 15.44 -3.03 -0.05 -26.67 16 17 C -0.12 -4.95 4.71 71.24 0.34 -4.62 16 18 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 19 C -0.55 -31.33 9.50 67.95 0.65 -30.69 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 23 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 H 0.07 0.95 6.26 -2.39 -0.01 0.94 16 28 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.50 6.44 -2.39 -0.02 1.48 16 31 H 0.11 1.27 7.89 -2.39 -0.02 1.25 16 32 H 0.06 1.66 7.42 -2.39 -0.02 1.65 16 33 H 0.12 1.88 7.89 -2.38 -0.02 1.86 16 34 H 0.10 1.67 6.26 -2.39 -0.01 1.66 16 35 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.35 7.70 8.72 -89.70 -0.78 6.91 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.10 0.67 7.89 -2.39 -0.02 0.65 16 42 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 45 H 0.11 3.90 7.40 -2.40 -0.02 3.89 16 46 H 0.11 3.91 7.18 -2.40 -0.02 3.89 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -82.99 405.28 0.11 -82.88 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.20 Total: 20.43 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 7.53 Total: -0.95 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -8.41 Total: -106.99 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.09 Total: -31.16 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -82.99 0.11 -82.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497352109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.256 kcal (2) G-P(sol) polarization free energy of solvation -82.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds