Wall clock time and date at job start Wed Apr 1 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47185 * 2 1 4 4 C 1.46502 * 120.00219 * 90.00216 * 3 2 1 5 5 C 1.52999 * 109.47256 * 89.99567 * 4 3 2 6 6 N 1.46900 * 109.47486 * 180.02562 * 5 4 3 7 7 C 1.46895 * 111.00506 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46446 * 324.99739 * 7 6 5 9 9 C 1.52995 * 109.47207 * 84.99681 * 7 6 5 10 10 C 1.50699 * 109.47294 * 205.00402 * 7 6 5 11 11 N 1.30254 * 125.61534 * 315.02220 * 10 7 6 12 12 C 1.34483 * 108.70003 * 179.97438 * 11 10 7 13 13 C 1.34322 * 107.66912 * 359.97438 * 12 11 10 14 14 C 1.50699 * 126.44743 * 179.97438 * 13 12 11 15 15 O 1.33960 * 125.62340 * 134.99806 * 10 7 6 16 16 C 1.34783 * 120.00120 * 269.99921 * 3 2 1 17 17 O 1.21279 * 120.00107 * 180.02562 * 16 3 2 18 18 C 1.50698 * 119.99835 * 0.02562 * 16 3 2 19 19 S 1.80995 * 109.47296 * 179.97438 * 18 16 3 20 20 C 1.76201 * 100.00178 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99784 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00046 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00197 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 119.99890 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46733 * 90.00186 * 24 22 20 26 26 H 1.48504 * 109.46863 * 209.99899 * 24 22 20 27 27 H 1.48496 * 109.46999 * 329.99776 * 24 22 20 28 28 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46617 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.46912 * 59.99535 * 1 2 3 31 31 H 1.08994 * 109.47269 * 239.99965 * 2 1 3 32 32 H 1.08997 * 109.47157 * 119.99723 * 2 1 3 33 33 H 1.09003 * 109.46789 * 329.99728 * 4 3 2 34 34 H 1.09000 * 109.47206 * 210.00251 * 4 3 2 35 35 H 1.09003 * 109.47090 * 60.00346 * 5 4 3 36 36 H 1.09000 * 109.47572 * 300.00460 * 5 4 3 37 37 H 1.00906 * 110.99634 * 56.04417 * 6 5 4 38 38 H 1.09002 * 109.47128 * 179.97438 * 9 7 6 39 39 H 1.08997 * 109.47539 * 300.00224 * 9 7 6 40 40 H 1.08999 * 109.46909 * 60.00392 * 9 7 6 41 41 H 1.07998 * 126.16613 * 179.97438 * 12 11 10 42 42 H 1.09006 * 109.47059 * 270.02933 * 14 13 12 43 43 H 1.09005 * 109.46695 * 30.01914 * 14 13 12 44 44 H 1.08990 * 109.47796 * 150.02444 * 14 13 12 45 45 H 1.09008 * 109.46965 * 300.00170 * 18 16 3 46 46 H 1.09006 * 109.47029 * 59.99804 * 18 16 3 47 47 H 0.97005 * 120.00098 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7076 1.8313 1.7104 6 7 3.9524 2.5233 2.9829 7 6 5.3332 2.3148 3.4385 8 1 5.6583 1.3110 3.1649 9 6 6.2497 3.3458 2.7770 10 6 5.3974 2.4728 4.9358 11 7 4.8320 3.4239 5.6231 12 6 5.1072 3.2365 6.9261 13 6 5.8654 2.1324 7.0279 14 6 6.4136 1.5369 8.2990 15 8 6.0450 1.6582 5.7793 16 6 2.2430 2.0166 -1.1672 17 8 2.6478 3.1598 -1.1672 18 6 1.9913 1.3064 -2.4723 19 16 2.3828 2.4154 -3.8481 20 6 2.0096 1.3593 -5.2082 21 1 1.6545 0.3550 -5.0305 22 6 2.1710 1.8185 -6.5081 23 7 1.8918 1.0297 -7.5241 24 14 2.7846 3.5559 -6.8154 25 1 4.2673 3.5499 -6.8977 26 1 2.2200 4.0616 -8.0925 27 1 2.3542 4.4373 -5.7006 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6877 2.0284 34 1 2.0956 3.1410 1.1384 35 1 4.3884 2.2154 0.9507 36 1 3.8746 0.7621 1.8407 37 1 3.2909 2.2309 3.6866 38 1 7.2743 3.1914 3.1154 39 1 6.2033 3.2315 1.6940 40 1 5.9246 4.3496 3.0506 41 1 4.7780 3.8611 7.7433 42 1 7.3931 1.9667 8.5087 43 1 5.7364 1.7562 9.1245 44 1 6.5079 0.4572 8.1834 45 1 2.6212 0.4186 -2.5302 46 1 0.9432 1.0126 -2.5298 47 1 2.0042 1.3508 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497352379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:25 Heat of formation + Delta-G solvation = -12.237750 kcal Electronic energy + Delta-G solvation = -26682.307563 eV Core-core repulsion = 22800.308501 eV Total energy + Delta-G solvation = -3881.999062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71893 -39.74759 -37.57303 -35.86862 -35.00753 -33.26172 -32.43129 -31.98690 -30.25746 -29.64851 -27.39395 -26.82099 -25.58954 -23.99998 -23.44041 -22.74769 -21.85782 -20.90366 -19.11305 -17.68123 -17.58977 -17.14614 -16.83041 -16.53313 -16.09719 -15.36970 -15.06390 -14.93196 -14.63652 -14.43288 -13.92730 -13.90384 -13.76784 -13.66727 -13.53663 -13.38755 -13.18033 -12.85719 -12.80198 -12.75896 -12.28048 -12.17393 -11.96611 -11.83298 -11.73220 -11.60548 -11.26449 -11.18682 -11.12408 -10.98826 -10.79545 -10.57685 -9.84435 -9.46511 -9.08194 -8.99413 -8.86785 -8.65134 -8.47404 -6.90644 -6.28141 -3.99711 1.01160 2.11583 2.32900 2.70339 2.94411 3.15606 3.34249 3.52133 3.57773 3.59417 3.89728 4.34037 4.34128 4.53994 4.58204 4.61575 4.75758 4.79172 4.85805 4.88077 4.89514 5.00631 5.06908 5.10748 5.13582 5.19453 5.25453 5.34095 5.35078 5.45743 5.59995 5.62822 5.63565 5.69534 5.76783 5.82128 5.90504 5.92376 5.97444 6.04719 6.16668 6.46847 6.64467 6.94886 7.40956 7.45079 7.94793 8.42016 8.45725 9.18256 10.80990 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.001968 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.914752 B =14223.076622 C =15046.819287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.618 5.618 4 C 0.122 3.878 5 C 0.043 3.957 6 N -0.664 5.664 7 C 0.190 3.810 8 H 0.070 0.930 9 C -0.138 4.138 10 C 0.180 3.820 11 N -0.454 5.454 12 C -0.044 4.044 13 C -0.051 4.051 14 C -0.068 4.068 15 O -0.203 6.203 16 C 0.532 3.468 17 O -0.512 6.512 18 C -0.121 4.121 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.346 0.654 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.184 0.816 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.706 -3.264 31.300 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 N -0.354 5.354 4 C -0.001 4.001 5 C -0.087 4.087 6 N -0.299 5.299 7 C 0.080 3.920 8 H 0.088 0.912 9 C -0.197 4.197 10 C -0.027 4.027 11 N -0.182 5.182 12 C -0.183 4.183 13 C -0.104 4.104 14 C -0.125 4.125 15 O -0.090 6.090 16 C 0.319 3.681 17 O -0.385 6.385 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.165 0.835 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.201 0.799 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.098 -0.554 30.509 31.117 hybrid contribution 0.056 -2.298 0.355 2.326 sum 6.154 -2.852 30.864 31.600 Atomic orbital electron populations 1.22224 0.95779 1.02320 1.02816 1.21571 0.94649 0.82362 1.03231 1.47930 1.67542 1.14493 1.05466 1.21211 0.94226 0.99890 0.84820 1.22485 0.99012 0.95676 0.91491 1.60402 1.01811 1.61913 1.05731 1.19786 0.91844 1.00111 0.80285 0.91188 1.21831 0.97098 0.99436 1.01286 1.26277 0.94290 0.87090 0.95063 1.70480 1.21447 1.23037 1.03250 1.23190 1.02119 0.98389 0.94643 1.23529 1.03751 0.98062 0.85068 1.20279 1.01729 1.01555 0.88913 1.84391 1.59507 1.48665 1.16387 1.20323 0.76590 0.86522 0.84641 1.90711 1.43720 1.17354 1.86764 1.23342 1.05374 1.03243 0.95227 1.84804 1.88091 1.21250 0.97515 1.22309 1.51728 1.01888 0.90922 0.89434 1.24705 0.93766 0.97920 0.94873 1.69937 1.46645 1.36254 0.98868 0.86742 0.80251 0.85077 0.79837 1.19221 1.19965 1.15878 0.91490 0.92483 0.91786 0.89798 0.90745 0.91010 0.88627 0.89601 0.94906 0.83498 0.92210 0.90519 0.90580 0.79925 0.89743 0.88879 0.90349 0.88659 0.88508 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.11 1.04 5.93 -4.04 -0.02 1.02 16 3 N -0.62 -8.02 2.47 -173.69 -0.43 -8.45 16 4 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 5 C 0.04 0.45 5.81 -3.82 -0.02 0.43 16 6 N -0.66 -6.65 6.29 -107.96 -0.68 -7.33 16 7 C 0.19 1.82 3.16 -68.87 -0.22 1.60 16 8 H 0.07 0.59 7.80 -51.93 -0.40 0.19 16 9 C -0.14 -1.34 9.40 37.15 0.35 -0.99 16 10 C 0.18 1.90 6.84 -12.95 -0.09 1.81 16 11 N -0.45 -5.18 11.28 -11.10 -0.13 -5.31 16 12 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 13 C -0.05 -0.40 7.39 -35.69 -0.26 -0.67 16 14 C -0.07 -0.25 10.43 36.00 0.38 0.13 16 15 O -0.20 -2.04 10.77 5.37 0.06 -1.98 16 16 C 0.53 9.45 7.69 -10.98 -0.08 9.37 16 17 O -0.51 -10.98 15.44 5.56 0.09 -10.90 16 18 C -0.12 -2.34 4.71 36.00 0.17 -2.18 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 24 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 31 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.07 0.63 8.07 -51.93 -0.42 0.22 16 34 H 0.10 1.32 7.42 -51.93 -0.39 0.94 16 35 H 0.09 1.09 7.44 -51.93 -0.39 0.70 16 36 H 0.03 0.30 8.06 -51.93 -0.42 -0.12 16 37 H 0.35 3.22 8.35 -39.29 -0.33 2.89 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.76 7.45 -51.93 -0.39 0.37 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 1.71 7.40 -51.91 -0.38 1.33 16 46 H 0.10 1.76 7.18 -51.91 -0.37 1.39 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -35.27 404.36 -7.95 -43.22 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.57 Total: 0.79 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 0.56 Total: -1.91 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.46 Total: -46.81 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.14 Total: -12.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.27 -7.95 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497352379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.984 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds