Wall clock time and date at job start Wed Apr 1 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47185 * 2 1 4 4 C 1.46502 * 120.00219 * 90.00216 * 3 2 1 5 5 C 1.52999 * 109.47256 * 89.99567 * 4 3 2 6 6 N 1.46900 * 109.47486 * 180.02562 * 5 4 3 7 7 C 1.46895 * 111.00506 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46446 * 324.99739 * 7 6 5 9 9 C 1.52995 * 109.47207 * 84.99681 * 7 6 5 10 10 C 1.50699 * 109.47294 * 205.00402 * 7 6 5 11 11 N 1.30254 * 125.61534 * 315.02220 * 10 7 6 12 12 C 1.34483 * 108.70003 * 179.97438 * 11 10 7 13 13 C 1.34322 * 107.66912 * 359.97438 * 12 11 10 14 14 C 1.50699 * 126.44743 * 179.97438 * 13 12 11 15 15 O 1.33960 * 125.62340 * 134.99806 * 10 7 6 16 16 C 1.34783 * 120.00120 * 269.99921 * 3 2 1 17 17 O 1.21279 * 120.00107 * 180.02562 * 16 3 2 18 18 C 1.50698 * 119.99835 * 0.02562 * 16 3 2 19 19 S 1.80995 * 109.47296 * 179.97438 * 18 16 3 20 20 C 1.76201 * 100.00178 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99784 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00046 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00197 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 119.99890 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46733 * 90.00186 * 24 22 20 26 26 H 1.48504 * 109.46863 * 209.99899 * 24 22 20 27 27 H 1.48496 * 109.46999 * 329.99776 * 24 22 20 28 28 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46617 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.46912 * 59.99535 * 1 2 3 31 31 H 1.08994 * 109.47269 * 239.99965 * 2 1 3 32 32 H 1.08997 * 109.47157 * 119.99723 * 2 1 3 33 33 H 1.09003 * 109.46789 * 329.99728 * 4 3 2 34 34 H 1.09000 * 109.47206 * 210.00251 * 4 3 2 35 35 H 1.09003 * 109.47090 * 60.00346 * 5 4 3 36 36 H 1.09000 * 109.47572 * 300.00460 * 5 4 3 37 37 H 1.00906 * 110.99634 * 56.04417 * 6 5 4 38 38 H 1.09002 * 109.47128 * 179.97438 * 9 7 6 39 39 H 1.08997 * 109.47539 * 300.00224 * 9 7 6 40 40 H 1.08999 * 109.46909 * 60.00392 * 9 7 6 41 41 H 1.07998 * 126.16613 * 179.97438 * 12 11 10 42 42 H 1.09006 * 109.47059 * 270.02933 * 14 13 12 43 43 H 1.09005 * 109.46695 * 30.01914 * 14 13 12 44 44 H 1.08990 * 109.47796 * 150.02444 * 14 13 12 45 45 H 1.09008 * 109.46965 * 300.00170 * 18 16 3 46 46 H 1.09006 * 109.47029 * 59.99804 * 18 16 3 47 47 H 0.97005 * 120.00098 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7076 1.8313 1.7104 6 7 3.9524 2.5233 2.9829 7 6 5.3332 2.3148 3.4385 8 1 5.6583 1.3110 3.1649 9 6 6.2497 3.3458 2.7770 10 6 5.3974 2.4728 4.9358 11 7 4.8320 3.4239 5.6231 12 6 5.1072 3.2365 6.9261 13 6 5.8654 2.1324 7.0279 14 6 6.4136 1.5369 8.2990 15 8 6.0450 1.6582 5.7793 16 6 2.2430 2.0166 -1.1672 17 8 2.6478 3.1598 -1.1672 18 6 1.9913 1.3064 -2.4723 19 16 2.3828 2.4154 -3.8481 20 6 2.0096 1.3593 -5.2082 21 1 1.6545 0.3550 -5.0305 22 6 2.1710 1.8185 -6.5081 23 7 1.8918 1.0297 -7.5241 24 14 2.7846 3.5559 -6.8154 25 1 4.2673 3.5499 -6.8977 26 1 2.2200 4.0616 -8.0925 27 1 2.3542 4.4373 -5.7006 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6877 2.0284 34 1 2.0956 3.1410 1.1384 35 1 4.3884 2.2154 0.9507 36 1 3.8746 0.7621 1.8407 37 1 3.2909 2.2309 3.6866 38 1 7.2743 3.1914 3.1154 39 1 6.2033 3.2315 1.6940 40 1 5.9246 4.3496 3.0506 41 1 4.7780 3.8611 7.7433 42 1 7.3931 1.9667 8.5087 43 1 5.7364 1.7562 9.1245 44 1 6.5079 0.4572 8.1834 45 1 2.6212 0.4186 -2.5302 46 1 0.9432 1.0126 -2.5298 47 1 2.0042 1.3508 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497352379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:24 Heat of formation + Delta-G solvation = -38.667456 kcal Electronic energy + Delta-G solvation = -26683.453641 eV Core-core repulsion = 22800.308501 eV Total energy + Delta-G solvation = -3883.145140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.39607 -41.01342 -38.43772 -37.01745 -35.72473 -34.66765 -33.95685 -32.66857 -31.20127 -30.95067 -28.25079 -27.84658 -27.51491 -24.74756 -24.33623 -23.63551 -22.55252 -21.64385 -20.52431 -19.46421 -18.35276 -18.15030 -17.83363 -17.53385 -17.10622 -17.02131 -16.46321 -15.98572 -15.82840 -15.19966 -15.16840 -14.90690 -14.81262 -14.72572 -14.50619 -14.30285 -14.17085 -13.88089 -13.59774 -13.44663 -13.34378 -13.24518 -13.04013 -13.02702 -12.83620 -12.75318 -12.62878 -12.55968 -12.35545 -12.02734 -11.98083 -11.85073 -11.50439 -11.16594 -10.91790 -10.51079 -9.82089 -9.68183 -9.58578 -8.99291 -8.51105 -6.21747 0.35783 0.98319 1.31358 1.42962 1.48170 1.54340 1.57762 1.64705 2.05451 2.25401 2.68950 2.87210 2.93873 3.11719 3.55818 3.77527 3.93719 3.97544 4.02492 4.05669 4.08804 4.15513 4.19975 4.37962 4.41000 4.43815 4.45312 4.55183 4.58214 4.65855 4.67397 4.79747 4.81009 4.88010 4.97723 5.02029 5.02541 5.15485 5.20306 5.31818 5.36389 5.55085 5.71218 5.77812 6.11628 6.19908 6.27451 6.72642 6.94340 7.11312 8.61109 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.001968 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.914752 B =14223.076622 C =15046.819287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.123 3.877 5 C 0.055 3.945 6 N -0.672 5.672 7 C 0.193 3.807 8 H 0.085 0.915 9 C -0.134 4.134 10 C 0.167 3.833 11 N -0.482 5.482 12 C -0.066 4.066 13 C -0.045 4.045 14 C -0.067 4.067 15 O -0.214 6.214 16 C 0.533 3.467 17 O -0.557 6.557 18 C -0.106 4.106 19 S -0.178 6.178 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.047 3.953 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.238 1.238 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.352 0.648 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.206 0.794 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -4.240 34.094 34.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.000 4.000 5 C -0.075 4.075 6 N -0.307 5.307 7 C 0.083 3.917 8 H 0.102 0.898 9 C -0.192 4.192 10 C -0.040 4.040 11 N -0.211 5.211 12 C -0.204 4.204 13 C -0.098 4.098 14 C -0.123 4.123 15 O -0.100 6.100 16 C 0.320 3.680 17 O -0.435 6.435 18 C -0.256 4.256 19 S 0.049 5.951 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.162 1.162 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.172 0.828 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.222 0.778 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.103 0.897 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.356 -1.576 33.340 33.977 hybrid contribution -0.061 -2.114 -0.301 2.136 sum 6.295 -3.690 33.039 33.835 Atomic orbital electron populations 1.22199 0.95144 1.03473 1.02017 1.21897 0.95125 0.80402 1.04985 1.47901 1.65678 1.15513 1.04502 1.21315 0.95798 0.98396 0.84446 1.22278 0.97521 0.96732 0.91001 1.60312 1.02366 1.62283 1.05722 1.19753 0.91361 1.00551 0.80066 0.89776 1.21777 0.97921 0.98631 1.00910 1.26290 0.94993 0.87406 0.95317 1.70440 1.22235 1.23721 1.04706 1.23638 1.02927 0.99452 0.94367 1.24340 1.02494 0.97535 0.85424 1.20520 1.02744 1.01773 0.87311 1.84393 1.59570 1.48843 1.17234 1.20032 0.76659 0.85934 0.85382 1.90698 1.46246 1.19153 1.87380 1.23309 1.06346 1.02274 0.93704 1.84743 1.88396 1.23008 0.98990 1.22442 1.51205 1.01399 0.92468 0.91911 1.25526 0.93986 1.01519 0.94779 1.70010 1.47771 1.38068 0.99499 0.85895 0.79948 0.80663 0.80044 1.18675 1.18327 1.16230 0.89398 0.91590 0.94266 0.90046 0.87067 0.87526 0.91427 0.92216 0.92694 0.82849 0.91080 0.91125 0.92386 0.77755 0.88409 0.86611 0.89705 0.87078 0.87342 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 71.98 0.74 -2.00 16 2 C 0.10 1.63 5.93 86.38 0.51 2.14 16 3 N -0.60 -14.55 2.47 -821.81 -2.03 -16.58 16 4 C 0.12 2.58 5.67 86.38 0.49 3.07 16 5 C 0.05 1.05 5.81 86.30 0.50 1.55 16 6 N -0.67 -12.80 6.29 -495.47 -3.12 -15.92 16 7 C 0.19 3.53 3.16 44.17 0.14 3.67 16 8 H 0.08 1.28 7.80 -2.39 -0.02 1.27 16 9 C -0.13 -2.61 9.40 71.98 0.68 -1.93 16 10 C 0.17 3.38 6.84 88.34 0.60 3.99 16 11 N -0.48 -10.73 11.28 -303.84 -3.43 -14.15 16 12 C -0.07 -1.07 11.80 83.39 0.98 -0.09 16 13 C -0.04 -0.63 7.39 24.79 0.18 -0.45 16 14 C -0.07 -0.30 10.43 71.24 0.74 0.44 16 15 O -0.21 -4.02 10.77 -3.70 -0.04 -4.06 16 16 C 0.53 18.72 7.69 87.66 0.67 19.39 16 17 O -0.56 -24.27 15.44 -3.03 -0.05 -24.32 16 18 C -0.11 -4.04 4.71 71.24 0.34 -3.71 16 19 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 20 C -0.53 -30.81 10.04 67.95 0.68 -30.13 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 22 C 0.05 2.79 5.50 84.86 0.47 3.26 16 23 N -0.92 -55.74 13.97 21.65 0.30 -55.44 16 24 Si 0.91 45.37 27.74 68.60 1.90 47.27 16 25 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.04 0.83 7.22 -2.39 -0.02 0.81 16 31 H 0.08 1.45 6.44 -2.39 -0.02 1.44 16 32 H 0.11 1.14 8.07 -2.39 -0.02 1.12 16 33 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16 34 H 0.07 1.85 7.42 -2.39 -0.02 1.84 16 35 H 0.06 1.50 7.44 -2.39 -0.02 1.48 16 36 H 0.05 0.83 8.06 -2.39 -0.02 0.81 16 37 H 0.35 6.01 8.35 -89.69 -0.75 5.26 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.44 7.45 -2.39 -0.02 1.42 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.21 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.08 0.31 8.14 -2.39 -0.02 0.30 16 45 H 0.11 3.90 7.40 -2.39 -0.02 3.88 16 46 H 0.11 3.90 7.18 -2.39 -0.02 3.89 16 47 H 0.28 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -78.76 404.36 0.41 -78.35 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.18 Total: 15.79 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 7.73 Total: -0.80 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -8.27 Total: -102.10 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.09 Total: -28.37 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -78.76 0.41 -78.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497352379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.685 kcal (2) G-P(sol) polarization free energy of solvation -78.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds