Wall clock time and date at job start Wed Apr 1 2020 00:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.50700 * 109.47626 * 120.00392 * 2 1 3 5 5 O 1.34753 * 126.43953 * 299.97449 * 4 2 1 6 6 C 1.33970 * 107.75658 * 180.02562 * 5 4 2 7 7 N 1.30256 * 108.75661 * 0.26839 * 6 5 4 8 8 C 1.34324 * 126.44813 * 120.00003 * 4 2 1 9 9 C 1.50699 * 126.16544 * 359.97438 * 8 4 2 10 10 N 1.46904 * 109.46716 * 90.00333 * 9 8 4 11 11 C 1.46896 * 111.00064 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47442 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.47207 * 295.00327 * 12 11 10 14 14 C 1.52999 * 109.47364 * 175.00088 * 12 11 10 15 15 N 1.46507 * 109.47066 * 55.00021 * 12 11 10 16 16 C 1.34771 * 119.99935 * 205.00369 * 15 12 11 17 17 O 1.21280 * 120.00444 * 359.97438 * 16 15 12 18 18 C 1.50696 * 119.99908 * 180.02562 * 16 15 12 19 19 S 1.81003 * 109.47494 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00148 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00361 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99896 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99734 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99915 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46811 * 90.00238 * 24 22 20 26 26 H 1.48494 * 109.47124 * 210.00553 * 24 22 20 27 27 H 1.48505 * 109.47312 * 330.00425 * 24 22 20 28 28 H 1.09001 * 109.47049 * 299.99832 * 1 2 3 29 29 H 1.08996 * 109.47548 * 60.00256 * 1 2 3 30 30 H 1.09008 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47049 * 240.00168 * 2 1 3 32 32 H 1.08993 * 109.47537 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47288 * 300.00438 * 3 2 1 34 34 H 1.09001 * 109.46940 * 60.00101 * 3 2 1 35 35 H 1.08002 * 125.61757 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47358 * 209.99812 * 9 8 4 37 37 H 1.08997 * 109.47092 * 330.00888 * 9 8 4 38 38 H 1.00899 * 111.00155 * 303.95713 * 10 9 8 39 39 H 1.09002 * 109.47599 * 299.99991 * 11 10 9 40 40 H 1.09002 * 109.47567 * 60.00169 * 11 10 9 41 41 H 1.09000 * 109.47246 * 299.99782 * 14 12 11 42 42 H 1.09001 * 109.47265 * 60.00335 * 14 12 11 43 43 H 1.09007 * 109.47173 * 179.97438 * 14 12 11 44 44 H 0.96996 * 119.99826 * 25.00551 * 15 12 11 45 45 H 1.09006 * 109.47258 * 299.99454 * 18 16 15 46 46 H 1.09005 * 109.47615 * 59.99254 * 18 16 15 47 47 H 0.97005 * 119.99263 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.7886 -0.3649 2.5098 6 6 2.4144 -1.2491 3.2982 7 7 3.0335 -2.1149 2.5474 8 6 2.8078 -1.8070 1.2580 9 6 3.3351 -2.5536 0.0599 10 7 4.6374 -1.9966 -0.3299 11 6 5.1836 -2.7019 -1.4970 12 6 6.5373 -2.0954 -1.8719 13 1 6.3960 -1.0649 -2.1978 14 6 7.1634 -2.9080 -3.0070 15 7 7.4239 -2.1216 -0.7059 16 6 8.4353 -1.2362 -0.6084 17 8 8.6118 -0.4180 -1.4860 18 6 9.3476 -1.2635 0.5907 19 16 10.5956 0.0375 0.4292 20 6 11.4973 -0.2165 1.9215 21 1 11.2030 -1.0004 2.6035 22 6 12.5853 0.5918 2.2210 23 7 13.2592 0.4017 3.3357 24 14 13.0939 1.9482 1.0417 25 1 12.3811 3.2026 1.3931 26 1 14.5593 2.1669 1.1413 27 1 12.7457 1.5533 -0.3468 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.4104 -1.2420 4.3782 36 1 3.4515 -3.6079 0.3111 37 1 2.6341 -2.4527 -0.7686 38 1 4.5687 -1.0053 -0.5055 39 1 5.3128 -3.7571 -1.2562 40 1 4.4955 -2.6024 -2.3365 41 1 7.3047 -3.9385 -2.6811 42 1 6.5038 -2.8885 -3.8746 43 1 8.1277 -2.4756 -3.2744 44 1 7.2830 -2.7762 -0.0041 45 1 8.7633 -1.0965 1.4957 46 1 9.8404 -2.2339 0.6504 47 1 14.0198 0.9663 3.5448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498013348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:47 Heat of formation + Delta-G solvation = -28.358342 kcal Electronic energy + Delta-G solvation = -27050.840906 eV Core-core repulsion = 23168.142803 eV Total energy + Delta-G solvation = -3882.698103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.63444 -39.42588 -37.36714 -36.15143 -35.41963 -33.95478 -32.38439 -31.48497 -30.00103 -28.53475 -27.67108 -26.97865 -25.55421 -24.21815 -23.77004 -21.83381 -21.46179 -20.47435 -20.22268 -17.85313 -17.49885 -16.89063 -16.74547 -16.36137 -15.73097 -15.39656 -15.27550 -14.97757 -14.84678 -14.70665 -14.36790 -14.16727 -13.78866 -13.64649 -13.29256 -13.17257 -12.76908 -12.73664 -12.68925 -12.42355 -12.31541 -12.04088 -11.98384 -11.74892 -11.73225 -11.51752 -11.37659 -11.21236 -11.00351 -10.95965 -10.64540 -10.52159 -9.80732 -9.38711 -9.06333 -8.95724 -8.81354 -8.72234 -8.42784 -6.84569 -6.23668 -3.94238 1.16879 2.37928 2.46612 2.86252 3.12151 3.35919 3.40608 3.54354 3.72656 3.80407 3.99687 4.14349 4.33944 4.37906 4.50918 4.55372 4.61647 4.76979 4.83220 4.93759 5.06503 5.10714 5.14111 5.15315 5.19529 5.25672 5.29441 5.35065 5.42157 5.43829 5.44685 5.56425 5.63748 5.68247 5.74246 5.82212 5.89064 5.96238 6.00833 6.12075 6.15462 6.58201 6.74954 6.99856 7.49331 7.82672 7.99760 8.48041 8.65816 9.22721 10.85712 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.002493 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.054818 B =11227.214547 C =12272.994130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 C -0.151 4.151 4 C -0.031 4.031 5 O -0.201 6.201 6 C 0.167 3.833 7 N -0.467 5.467 8 C -0.007 4.007 9 C 0.142 3.858 10 N -0.678 5.678 11 C 0.052 3.948 12 C 0.147 3.853 13 H 0.084 0.916 14 C -0.163 4.163 15 N -0.717 5.717 16 C 0.533 3.467 17 O -0.528 6.528 18 C -0.122 4.122 19 S -0.144 6.144 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.094 3.906 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.344 0.656 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.403 0.597 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.065 -5.946 -8.357 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 C -0.208 4.208 4 C -0.085 4.085 5 O -0.087 6.087 6 C -0.060 4.060 7 N -0.195 5.195 8 C -0.127 4.127 9 C 0.013 3.987 10 N -0.310 5.310 11 C -0.078 4.078 12 C 0.041 3.959 13 H 0.102 0.898 14 C -0.222 4.222 15 N -0.371 5.371 16 C 0.319 3.681 17 O -0.403 6.403 18 C -0.273 4.273 19 S 0.082 5.918 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.519 5.519 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.162 0.838 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.238 0.762 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.937 -5.386 -9.004 29.842 hybrid contribution -0.757 0.174 0.548 0.950 sum -28.693 -5.212 -8.456 30.364 Atomic orbital electron populations 1.21876 0.93386 1.02465 1.02856 1.19761 0.96586 0.96245 0.90218 1.21893 1.02010 0.94058 1.02851 1.23183 1.02953 0.98198 0.84190 1.84410 1.59337 1.48648 1.16316 1.28061 0.93316 0.85657 0.98972 1.70342 1.20602 1.26748 1.01819 1.21248 1.01191 0.97064 0.93246 1.20110 0.89173 0.98751 0.90634 1.60317 1.24861 1.08098 1.37739 1.22316 0.94807 0.99312 0.91341 1.20835 0.88062 1.00609 0.86403 0.89781 1.22155 1.02079 1.00255 0.97668 1.45819 1.30865 1.36735 1.23655 1.20212 0.80463 0.80035 0.87393 1.90675 1.71150 1.37496 1.40989 1.23263 1.00165 1.05063 0.98798 1.84716 1.32683 1.42630 1.31752 1.22340 1.16769 1.22496 1.05066 0.89419 1.24723 0.94828 0.96843 0.95008 1.69949 1.19478 1.39175 1.23253 0.86726 0.78548 0.82807 0.83708 1.19280 1.20027 1.15918 0.91954 0.91376 0.92260 0.88396 0.91768 0.91333 0.91918 0.73503 0.89115 0.93660 0.83760 0.90068 0.93727 0.92346 0.91996 0.91391 0.76238 0.88567 0.88672 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.18 37.15 0.34 -0.45 16 2 C -0.01 -0.06 3.27 -91.78 -0.30 -0.36 16 3 C -0.15 -1.00 9.18 37.16 0.34 -0.66 16 4 C -0.03 -0.28 5.89 -35.69 -0.21 -0.49 16 5 O -0.20 -1.94 10.78 5.35 0.06 -1.88 16 6 C 0.17 1.50 13.23 52.09 0.69 2.19 16 7 N -0.47 -5.45 11.29 -11.18 -0.13 -5.58 16 8 C -0.01 -0.08 6.62 -82.82 -0.55 -0.62 16 9 C 0.14 1.18 5.87 -4.97 -0.03 1.15 16 10 N -0.68 -6.18 6.21 -115.06 -0.71 -6.89 16 11 C 0.05 0.40 5.24 -3.83 -0.02 0.38 16 12 C 0.15 1.57 2.81 -67.93 -0.19 1.38 16 13 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 14 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 15 N -0.72 -9.49 4.80 -53.81 -0.26 -9.74 16 16 C 0.53 9.71 7.81 -10.99 -0.09 9.62 16 17 O -0.53 -11.41 15.53 5.56 0.09 -11.33 16 18 C -0.12 -2.48 6.16 36.00 0.22 -2.26 16 19 S -0.14 -3.75 18.55 -107.50 -1.99 -5.74 16 20 C -0.52 -15.33 10.04 30.94 0.31 -15.02 16 21 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 22 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -27.11 13.97 55.49 0.78 -26.33 16 24 Si 0.86 22.20 27.74 -169.99 -4.71 17.49 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.10 0.52 6.82 -51.93 -0.35 0.16 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.25 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.28 7.16 -51.93 -0.37 -0.09 16 38 H 0.34 3.29 8.72 -39.29 -0.34 2.94 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.40 4.74 8.60 -40.82 -0.35 4.39 16 45 H 0.10 1.88 8.14 -51.91 -0.42 1.46 16 46 H 0.09 1.81 8.14 -51.91 -0.42 1.39 16 47 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -36.48 407.37 -7.71 -44.19 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.73 Total: 3.37 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 0.78 Total: -3.68 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.32 Total: -48.55 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.14 Total: -13.21 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.48 -7.71 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498013348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.833 kcal (2) G-P(sol) polarization free energy of solvation -36.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds