Wall clock time and date at job start Wed Apr 1 2020 00:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.50700 * 109.47626 * 120.00392 * 2 1 3 5 5 O 1.34753 * 126.43953 * 299.97449 * 4 2 1 6 6 C 1.33970 * 107.75658 * 180.02562 * 5 4 2 7 7 N 1.30256 * 108.75661 * 0.26839 * 6 5 4 8 8 C 1.34324 * 126.44813 * 120.00003 * 4 2 1 9 9 C 1.50699 * 126.16544 * 359.97438 * 8 4 2 10 10 N 1.46904 * 109.46716 * 90.00333 * 9 8 4 11 11 C 1.46896 * 111.00064 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47442 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.47207 * 295.00327 * 12 11 10 14 14 C 1.52999 * 109.47364 * 175.00088 * 12 11 10 15 15 N 1.46507 * 109.47066 * 55.00021 * 12 11 10 16 16 C 1.34771 * 119.99935 * 205.00369 * 15 12 11 17 17 O 1.21280 * 120.00444 * 359.97438 * 16 15 12 18 18 C 1.50696 * 119.99908 * 180.02562 * 16 15 12 19 19 S 1.81003 * 109.47494 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00148 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00361 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99896 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99734 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99915 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46811 * 90.00238 * 24 22 20 26 26 H 1.48494 * 109.47124 * 210.00553 * 24 22 20 27 27 H 1.48505 * 109.47312 * 330.00425 * 24 22 20 28 28 H 1.09001 * 109.47049 * 299.99832 * 1 2 3 29 29 H 1.08996 * 109.47548 * 60.00256 * 1 2 3 30 30 H 1.09008 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47049 * 240.00168 * 2 1 3 32 32 H 1.08993 * 109.47537 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47288 * 300.00438 * 3 2 1 34 34 H 1.09001 * 109.46940 * 60.00101 * 3 2 1 35 35 H 1.08002 * 125.61757 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47358 * 209.99812 * 9 8 4 37 37 H 1.08997 * 109.47092 * 330.00888 * 9 8 4 38 38 H 1.00899 * 111.00155 * 303.95713 * 10 9 8 39 39 H 1.09002 * 109.47599 * 299.99991 * 11 10 9 40 40 H 1.09002 * 109.47567 * 60.00169 * 11 10 9 41 41 H 1.09000 * 109.47246 * 299.99782 * 14 12 11 42 42 H 1.09001 * 109.47265 * 60.00335 * 14 12 11 43 43 H 1.09007 * 109.47173 * 179.97438 * 14 12 11 44 44 H 0.96996 * 119.99826 * 25.00551 * 15 12 11 45 45 H 1.09006 * 109.47258 * 299.99454 * 18 16 15 46 46 H 1.09005 * 109.47615 * 59.99254 * 18 16 15 47 47 H 0.97005 * 119.99263 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.7886 -0.3649 2.5098 6 6 2.4144 -1.2491 3.2982 7 7 3.0335 -2.1149 2.5474 8 6 2.8078 -1.8070 1.2580 9 6 3.3351 -2.5536 0.0599 10 7 4.6374 -1.9966 -0.3299 11 6 5.1836 -2.7019 -1.4970 12 6 6.5373 -2.0954 -1.8719 13 1 6.3960 -1.0649 -2.1978 14 6 7.1634 -2.9080 -3.0070 15 7 7.4239 -2.1216 -0.7059 16 6 8.4353 -1.2362 -0.6084 17 8 8.6118 -0.4180 -1.4860 18 6 9.3476 -1.2635 0.5907 19 16 10.5956 0.0375 0.4292 20 6 11.4973 -0.2165 1.9215 21 1 11.2030 -1.0004 2.6035 22 6 12.5853 0.5918 2.2210 23 7 13.2592 0.4017 3.3357 24 14 13.0939 1.9482 1.0417 25 1 12.3811 3.2026 1.3931 26 1 14.5593 2.1669 1.1413 27 1 12.7457 1.5533 -0.3468 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.4104 -1.2420 4.3782 36 1 3.4515 -3.6079 0.3111 37 1 2.6341 -2.4527 -0.7686 38 1 4.5687 -1.0053 -0.5055 39 1 5.3128 -3.7571 -1.2562 40 1 4.4955 -2.6024 -2.3365 41 1 7.3047 -3.9385 -2.6811 42 1 6.5038 -2.8885 -3.8746 43 1 8.1277 -2.4756 -3.2744 44 1 7.2830 -2.7762 -0.0041 45 1 8.7633 -1.0965 1.4957 46 1 9.8404 -2.2339 0.6504 47 1 14.0198 0.9663 3.5448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498013348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:46 Heat of formation + Delta-G solvation = -57.364807 kcal Electronic energy + Delta-G solvation = -27052.098721 eV Core-core repulsion = 23168.142803 eV Total energy + Delta-G solvation = -3883.955918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.31663 -40.73793 -38.21768 -36.75689 -36.24083 -34.83862 -34.67175 -32.65912 -30.75160 -29.92644 -28.12850 -27.85231 -27.64460 -24.92302 -24.39093 -22.67778 -22.29410 -21.48917 -21.06600 -19.88178 -18.24791 -17.92986 -17.58794 -17.51988 -17.09572 -16.55336 -16.43667 -15.99590 -15.86792 -15.75265 -15.52034 -14.97751 -14.91414 -14.75026 -14.62436 -14.13185 -14.06332 -13.87776 -13.35497 -13.27865 -13.13153 -13.03238 -13.00821 -12.96619 -12.75502 -12.56146 -12.55724 -12.24198 -12.15359 -11.99656 -11.86935 -11.78717 -11.35426 -11.17372 -10.91017 -10.53989 -10.02075 -9.71774 -9.35744 -8.98923 -8.51760 -6.22260 0.50618 1.00050 1.31011 1.46913 1.57143 1.65207 1.67631 1.86658 2.24486 2.34054 2.73192 2.86152 3.15041 3.37527 3.58631 3.80207 3.81658 3.95453 3.98095 4.07724 4.17096 4.25862 4.27225 4.41959 4.48040 4.48281 4.55523 4.63445 4.70403 4.76629 4.79831 4.80845 4.86620 4.93154 4.99470 5.08626 5.13753 5.26191 5.30743 5.31164 5.36414 5.60276 5.70522 5.98818 6.10981 6.30263 6.58707 6.80449 6.93063 7.29845 8.60965 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.002493 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.054818 B =11227.214547 C =12272.994130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.008 4.008 3 C -0.149 4.149 4 C -0.035 4.035 5 O -0.211 6.211 6 C 0.166 3.834 7 N -0.508 5.508 8 C -0.028 4.028 9 C 0.148 3.852 10 N -0.694 5.694 11 C 0.063 3.937 12 C 0.144 3.856 13 H 0.067 0.933 14 C -0.157 4.157 15 N -0.694 5.694 16 C 0.537 3.463 17 O -0.565 6.565 18 C -0.111 4.111 19 S -0.171 6.171 20 C -0.530 4.530 21 H 0.059 0.941 22 C 0.044 3.956 23 N -0.918 5.918 24 Si 0.917 3.083 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.282 0.718 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.340 0.660 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.035 0.965 44 H 0.413 0.587 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.970 -6.356 -10.093 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 C -0.206 4.206 4 C -0.089 4.089 5 O -0.098 6.098 6 C -0.060 4.060 7 N -0.236 5.236 8 C -0.148 4.148 9 C 0.019 3.981 10 N -0.326 5.326 11 C -0.066 4.066 12 C 0.040 3.960 13 H 0.085 0.915 14 C -0.216 4.216 15 N -0.347 5.347 16 C 0.322 3.678 17 O -0.444 6.444 18 C -0.262 4.262 19 S 0.056 5.944 20 C -0.678 4.678 21 H 0.077 0.923 22 C -0.161 4.161 23 N -0.556 5.556 24 Si 0.739 3.261 25 H -0.187 1.187 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.298 0.702 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -29.876 -5.845 -10.736 32.280 hybrid contribution -0.294 0.187 1.149 1.201 sum -30.170 -5.658 -9.587 32.159 Atomic orbital electron populations 1.21851 0.92401 1.02661 1.03261 1.19904 0.97331 0.95833 0.89576 1.21872 1.00994 0.94455 1.03262 1.23676 1.02522 0.98057 0.84629 1.84421 1.59550 1.48948 1.16841 1.28872 0.92153 0.84758 1.00205 1.70328 1.22152 1.28219 1.02942 1.21616 1.01851 0.97878 0.93414 1.20117 0.89224 0.98020 0.90713 1.60292 1.25773 1.08032 1.38538 1.22255 0.93145 0.99244 0.91990 1.21067 0.89100 1.00348 0.85519 0.91470 1.22099 1.00885 1.00343 0.98262 1.45684 1.29321 1.35051 1.24609 1.19801 0.81182 0.80632 0.86152 1.90664 1.72403 1.39376 1.42004 1.23261 0.99124 1.03306 1.00517 1.84586 1.34451 1.45678 1.29721 1.22480 1.17468 1.21762 1.06088 0.92322 1.25607 0.94836 0.99093 0.96604 1.70028 1.20229 1.40488 1.24855 0.85832 0.79071 0.79861 0.81379 1.18676 1.18192 1.15983 0.92891 0.89632 0.92152 0.86833 0.93268 0.89543 0.92895 0.70234 0.89560 0.91170 0.84205 0.88895 0.90908 0.91009 0.89323 0.94611 0.75061 0.87857 0.87351 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.18 71.98 0.66 -0.60 16 2 C -0.01 -0.09 3.27 -11.54 -0.04 -0.13 16 3 C -0.15 -1.81 9.18 71.98 0.66 -1.15 16 4 C -0.03 -0.60 5.89 24.79 0.15 -0.45 16 5 O -0.21 -3.98 10.78 -3.77 -0.04 -4.02 16 6 C 0.17 2.91 13.23 130.48 1.73 4.63 16 7 N -0.51 -11.62 11.29 -304.07 -3.43 -15.06 16 8 C -0.03 -0.55 6.62 41.26 0.27 -0.28 16 9 C 0.15 2.15 5.87 85.56 0.50 2.65 16 10 N -0.69 -11.21 6.21 -517.94 -3.22 -14.42 16 11 C 0.06 0.77 5.24 86.30 0.45 1.23 16 12 C 0.14 2.79 2.81 44.99 0.13 2.92 16 13 H 0.07 1.59 7.58 -2.38 -0.02 1.57 16 14 C -0.16 -2.76 9.48 71.98 0.68 -2.07 16 15 N -0.69 -17.32 4.80 -442.53 -2.12 -19.44 16 16 C 0.54 19.22 7.81 87.66 0.68 19.91 16 17 O -0.57 -24.41 15.53 -3.03 -0.05 -24.45 16 18 C -0.11 -4.48 6.16 71.23 0.44 -4.04 16 19 S -0.17 -8.93 18.55 -56.49 -1.05 -9.98 16 20 C -0.53 -31.92 10.04 67.96 0.68 -31.24 16 21 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 22 C 0.04 2.63 5.50 84.86 0.47 3.10 16 23 N -0.92 -57.14 13.97 21.65 0.30 -56.84 16 24 Si 0.92 45.95 27.74 68.60 1.90 47.86 16 25 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.11 0.90 6.82 -2.39 -0.02 0.88 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.28 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 0.65 7.16 -2.39 -0.02 0.63 16 38 H 0.34 5.95 8.72 -89.69 -0.78 5.17 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.41 8.88 8.60 -92.71 -0.80 8.08 16 45 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 46 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 47 H 0.28 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -80.71 407.37 -0.88 -81.58 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.64 Total: 20.30 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 7.47 Total: -5.52 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -8.47 Total: -105.77 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.09 Total: -28.47 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.86 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -80.71 -0.88 -81.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498013348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.220 kcal (2) G-P(sol) polarization free energy of solvation -80.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds