Wall clock time and date at job start Wed Apr 1 2020 00:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47183 * 2 1 4 4 C 1.50701 * 109.47099 * 120.00273 * 2 1 3 5 5 O 1.21274 * 120.00577 * 120.00014 * 4 2 1 6 6 N 1.34781 * 119.99431 * 299.99308 * 4 2 1 7 7 C 1.46500 * 119.99811 * 179.97438 * 6 4 2 8 8 C 1.52996 * 117.50180 * 223.62805 * 7 6 4 9 9 C 1.52999 * 60.00182 * 252.51311 * 8 7 6 10 10 N 1.46907 * 109.46923 * 239.99671 * 2 1 3 11 11 C 1.47477 * 111.00211 * 325.89073 * 10 2 1 12 12 C 1.53633 * 87.94884 * 138.65261 * 11 10 2 13 13 C 1.47478 * 111.00074 * 61.86619 * 10 2 1 14 14 H 1.09002 * 113.47045 * 336.12056 * 13 10 2 15 15 C 1.53001 * 113.47540 * 106.52522 * 13 10 2 16 16 N 1.46498 * 109.47500 * 303.89650 * 15 13 10 17 17 C 1.34767 * 120.00253 * 180.02562 * 16 15 13 18 18 O 1.21279 * 119.99934 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00241 * 180.02562 * 17 16 15 20 20 S 1.80997 * 109.47306 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00137 * 179.97438 * 20 19 17 22 22 H 1.07992 * 119.99618 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99884 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00338 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99764 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47596 * 59.99760 * 25 23 21 27 27 H 1.48497 * 109.47179 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47205 * 299.99618 * 25 23 21 29 29 H 1.09003 * 109.47247 * 189.95384 * 1 2 3 30 30 H 1.08995 * 109.47204 * 309.95175 * 1 2 3 31 31 H 1.09003 * 109.46975 * 69.95597 * 1 2 3 32 32 H 0.97001 * 120.00423 * 0.02562 * 6 4 2 33 33 H 1.09003 * 115.54974 * 9.33835 * 7 6 4 34 34 H 1.08999 * 117.50212 * 0.02562 * 8 7 6 35 35 H 1.08998 * 117.50443 * 145.02070 * 8 7 6 36 36 H 1.09004 * 117.49812 * 252.51221 * 9 8 7 37 37 H 1.08995 * 117.52401 * 107.47632 * 9 8 7 38 38 H 1.08999 * 113.47618 * 253.47063 * 11 10 2 39 39 H 1.09004 * 113.47378 * 23.93763 * 11 10 2 40 40 H 1.09009 * 114.20090 * 220.39199 * 12 11 10 41 41 H 1.08999 * 114.16973 * 87.65796 * 12 11 10 42 42 H 1.08997 * 109.46646 * 183.89733 * 15 13 10 43 43 H 1.08997 * 109.46833 * 63.90077 * 15 13 10 44 44 H 0.97005 * 119.99564 * 0.02562 * 16 15 13 45 45 H 1.08993 * 109.46819 * 299.99958 * 19 17 16 46 46 H 1.08996 * 109.46728 * 60.00185 * 19 17 16 47 47 H 0.96998 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1946 -0.9408 3.6507 8 6 1.2022 -1.1591 4.7946 9 6 2.3187 -0.1228 4.9378 10 7 2.0196 -0.6926 -1.1995 11 6 1.1210 -1.8004 -1.5740 12 6 1.2994 -1.3763 -3.0398 13 6 1.5837 0.0015 -2.4255 14 1 0.6887 0.6079 -2.2862 15 6 2.7100 0.7617 -3.1287 16 7 3.3180 1.7101 -2.1922 17 6 4.3373 2.4947 -2.5943 18 8 4.7515 2.4153 -3.7314 19 6 4.9631 3.4699 -1.6308 20 16 6.2954 4.3694 -2.4627 21 6 6.8328 5.4081 -1.1448 22 1 6.3491 5.3513 -0.1810 23 6 7.8779 6.2992 -1.3455 24 7 8.4679 6.3679 -2.5202 25 14 8.4481 7.3998 0.0519 26 1 8.9056 6.5604 1.1882 27 1 9.5701 8.2526 -0.4160 28 1 7.3223 8.2612 0.4946 29 1 -0.3634 -1.0122 0.1776 30 1 -0.3633 0.6599 0.7877 31 1 -0.3633 0.3522 -0.9655 32 1 1.1489 0.5386 2.5436 33 1 2.9387 -1.7176 3.4744 34 1 0.1862 -0.7891 4.6570 35 1 1.2931 -2.0798 5.3709 36 1 3.1442 -0.3617 5.6083 37 1 2.0378 0.9294 4.8944 38 1 1.5313 -2.7858 -1.3533 39 1 0.1020 -1.6756 -1.2077 40 1 0.3855 -1.4209 -3.6323 41 1 2.1581 -1.8303 -3.5344 42 1 2.3042 1.3040 -3.9827 43 1 3.4656 0.0554 -3.4725 44 1 2.9869 1.7733 -1.2826 45 1 4.2075 4.1758 -1.2863 46 1 5.3694 2.9272 -0.7773 47 1 9.1984 6.9904 -2.6603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:58 Heat of formation + Delta-G solvation = 5.971866 kcal Electronic energy + Delta-G solvation = -27374.089688 eV Core-core repulsion = 23492.880254 eV Total energy + Delta-G solvation = -3881.209434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53195 -39.67304 -38.81662 -37.31901 -34.40425 -33.82200 -32.41306 -32.40037 -29.99629 -28.00211 -27.53318 -25.45055 -24.98181 -23.32437 -22.82777 -22.07184 -20.80939 -20.41590 -19.41975 -17.85388 -17.56169 -17.45246 -16.57771 -16.24230 -15.98731 -15.59797 -15.20877 -14.87341 -14.78356 -14.66230 -14.47194 -14.31400 -13.92729 -13.58663 -13.15226 -13.08951 -13.05489 -12.78784 -12.58351 -12.10759 -12.02121 -11.94354 -11.69560 -11.61736 -11.55031 -11.45095 -11.02382 -11.02044 -10.94860 -10.89777 -10.72566 -10.03477 -9.79768 -9.35499 -9.15031 -9.10025 -9.03841 -8.78109 -8.20378 -6.46501 -6.18931 -3.89146 2.27821 2.55248 3.05091 3.17904 3.24792 3.28563 3.31575 3.48602 3.54092 3.79984 4.05049 4.22863 4.22992 4.28383 4.33785 4.46196 4.51392 4.53851 4.55880 4.72818 4.78892 4.88197 5.04895 5.12650 5.15916 5.18491 5.24280 5.35860 5.39898 5.44469 5.48387 5.52761 5.62075 5.62619 5.67604 5.82083 5.90903 5.93967 5.97416 6.11043 6.17056 6.59780 6.69501 7.11179 7.61447 7.76094 7.92232 8.37426 8.68408 9.26017 10.88487 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.002842 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.844870 B = 9850.888073 C =12469.936299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.025 3.975 3 H 0.107 0.893 4 C 0.527 3.473 5 O -0.511 6.511 6 N -0.706 5.706 7 C 0.082 3.918 8 C -0.195 4.195 9 C -0.189 4.189 10 N -0.434 5.434 11 C -0.013 4.013 12 C -0.133 4.133 13 C 0.008 3.992 14 H 0.090 0.910 15 C 0.140 3.860 16 N -0.732 5.732 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.153 4.153 20 S -0.058 6.058 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.400 0.600 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.391 0.609 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.169 -15.814 10.494 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.088 4.088 3 H 0.124 0.876 4 C 0.312 3.688 5 O -0.383 6.383 6 N -0.358 5.358 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.227 4.227 10 N -0.157 5.157 11 C -0.141 4.141 12 C -0.171 4.171 13 C -0.101 4.101 14 H 0.107 0.893 15 C 0.015 3.985 16 N -0.387 5.387 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.234 0.766 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.225 0.775 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.075 -16.701 8.512 28.205 hybrid contribution -1.427 1.574 2.926 3.616 sum -22.502 -15.127 11.437 29.428 Atomic orbital electron populations 1.22495 0.94616 1.03396 1.03912 1.22197 0.94884 0.99655 0.92073 0.87560 1.20288 0.80074 0.84708 0.83730 1.90724 1.35881 1.25517 1.86211 1.45386 1.53902 1.31720 1.04754 1.21585 1.00793 0.99641 0.80425 1.23423 0.95828 1.01443 1.02630 1.23387 1.01563 0.97694 1.00059 1.69155 1.42644 1.05299 0.98568 1.24049 0.97126 0.97895 0.95047 1.23171 1.03089 0.94535 0.96280 1.23885 0.97653 0.96520 0.92045 0.89271 1.21246 0.94159 0.91257 0.91807 1.45896 1.36913 1.40756 1.15126 1.20270 0.78847 0.80482 0.88649 1.90698 1.60937 1.67680 1.19919 1.23526 1.04357 1.00457 1.02060 1.85391 1.35394 1.44864 1.17525 1.22828 1.21898 1.24827 0.98868 0.91048 1.24985 0.95392 0.96702 0.96484 1.70008 1.22608 1.35763 1.21918 0.86232 0.78274 0.79820 0.81215 1.19945 1.20806 1.19973 0.90858 0.91040 0.90425 0.76553 0.84453 0.88604 0.88021 0.87735 0.88333 0.89158 0.89948 0.90076 0.88221 0.91119 0.90832 0.77483 0.89464 0.89340 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.90 7.57 37.16 0.28 -0.62 16 2 C 0.02 0.20 2.66 -68.86 -0.18 0.01 16 3 H 0.11 0.79 6.22 -51.93 -0.32 0.47 16 4 C 0.53 5.43 7.11 -10.98 -0.08 5.35 16 5 O -0.51 -7.52 15.87 5.56 0.09 -7.43 16 6 N -0.71 -5.33 5.47 -53.81 -0.29 -5.62 16 7 C 0.08 0.64 6.43 -67.93 -0.44 0.20 16 8 C -0.19 -1.10 10.46 -26.73 -0.28 -1.38 16 9 C -0.19 -1.14 10.46 -26.73 -0.28 -1.42 16 10 N -0.43 -4.27 5.47 -229.71 -1.26 -5.52 16 11 C -0.01 -0.10 7.19 -7.48 -0.05 -0.15 16 12 C -0.13 -0.95 8.01 -26.14 -0.21 -1.16 16 13 C 0.01 0.07 3.06 -71.44 -0.22 -0.15 16 14 H 0.09 0.58 5.91 -51.93 -0.31 0.27 16 15 C 0.14 1.69 5.80 -4.04 -0.02 1.67 16 16 N -0.73 -10.40 5.47 -60.30 -0.33 -10.73 16 17 C 0.53 10.37 7.85 -10.99 -0.09 10.28 16 18 O -0.52 -12.17 15.86 5.56 0.09 -12.08 16 19 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.49 9.50 30.94 0.29 -15.20 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.48 13.22 55.49 0.73 -25.74 16 25 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.07 0.37 6.48 -51.93 -0.34 0.04 16 30 H 0.07 0.23 7.86 -51.93 -0.41 -0.18 16 31 H 0.08 0.32 5.82 -51.93 -0.30 0.02 16 32 H 0.40 1.93 8.46 -40.82 -0.35 1.58 16 33 H 0.14 1.33 7.40 -51.93 -0.38 0.95 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.49 4.85 -51.93 -0.25 0.24 16 40 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.10 0.80 7.95 -51.93 -0.41 0.39 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 44 H 0.39 4.61 6.21 -40.82 -0.25 4.36 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 46 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -37.96 395.00 -10.48 -48.44 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.08 Total: 3.51 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.15 Total: -3.52 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -1.15 Total: -47.62 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.18 Total: -19.51 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.96 -10.48 -48.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.415 kcal (2) G-P(sol) polarization free energy of solvation -37.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds