Wall clock time and date at job start Wed Apr 1 2020 00:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47183 * 2 1 4 4 C 1.50701 * 109.47099 * 120.00273 * 2 1 3 5 5 O 1.21274 * 120.00577 * 120.00014 * 4 2 1 6 6 N 1.34781 * 119.99431 * 299.99308 * 4 2 1 7 7 C 1.46500 * 119.99811 * 179.97438 * 6 4 2 8 8 C 1.52996 * 117.50180 * 223.62805 * 7 6 4 9 9 C 1.52999 * 60.00182 * 252.51311 * 8 7 6 10 10 N 1.46907 * 109.46923 * 239.99671 * 2 1 3 11 11 C 1.47477 * 111.00211 * 325.89073 * 10 2 1 12 12 C 1.53633 * 87.94884 * 138.65261 * 11 10 2 13 13 C 1.47478 * 111.00074 * 61.86619 * 10 2 1 14 14 H 1.09002 * 113.47045 * 336.12056 * 13 10 2 15 15 C 1.53001 * 113.47540 * 106.52522 * 13 10 2 16 16 N 1.46498 * 109.47500 * 303.89650 * 15 13 10 17 17 C 1.34767 * 120.00253 * 180.02562 * 16 15 13 18 18 O 1.21279 * 119.99934 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00241 * 180.02562 * 17 16 15 20 20 S 1.80997 * 109.47306 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00137 * 179.97438 * 20 19 17 22 22 H 1.07992 * 119.99618 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99884 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00338 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99764 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47596 * 59.99760 * 25 23 21 27 27 H 1.48497 * 109.47179 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47205 * 299.99618 * 25 23 21 29 29 H 1.09003 * 109.47247 * 189.95384 * 1 2 3 30 30 H 1.08995 * 109.47204 * 309.95175 * 1 2 3 31 31 H 1.09003 * 109.46975 * 69.95597 * 1 2 3 32 32 H 0.97001 * 120.00423 * 0.02562 * 6 4 2 33 33 H 1.09003 * 115.54974 * 9.33835 * 7 6 4 34 34 H 1.08999 * 117.50212 * 0.02562 * 8 7 6 35 35 H 1.08998 * 117.50443 * 145.02070 * 8 7 6 36 36 H 1.09004 * 117.49812 * 252.51221 * 9 8 7 37 37 H 1.08995 * 117.52401 * 107.47632 * 9 8 7 38 38 H 1.08999 * 113.47618 * 253.47063 * 11 10 2 39 39 H 1.09004 * 113.47378 * 23.93763 * 11 10 2 40 40 H 1.09009 * 114.20090 * 220.39199 * 12 11 10 41 41 H 1.08999 * 114.16973 * 87.65796 * 12 11 10 42 42 H 1.08997 * 109.46646 * 183.89733 * 15 13 10 43 43 H 1.08997 * 109.46833 * 63.90077 * 15 13 10 44 44 H 0.97005 * 119.99564 * 0.02562 * 16 15 13 45 45 H 1.08993 * 109.46819 * 299.99958 * 19 17 16 46 46 H 1.08996 * 109.46728 * 60.00185 * 19 17 16 47 47 H 0.96998 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1946 -0.9408 3.6507 8 6 1.2022 -1.1591 4.7946 9 6 2.3187 -0.1228 4.9378 10 7 2.0196 -0.6926 -1.1995 11 6 1.1210 -1.8004 -1.5740 12 6 1.2994 -1.3763 -3.0398 13 6 1.5837 0.0015 -2.4255 14 1 0.6887 0.6079 -2.2862 15 6 2.7100 0.7617 -3.1287 16 7 3.3180 1.7101 -2.1922 17 6 4.3373 2.4947 -2.5943 18 8 4.7515 2.4153 -3.7314 19 6 4.9631 3.4699 -1.6308 20 16 6.2954 4.3694 -2.4627 21 6 6.8328 5.4081 -1.1448 22 1 6.3491 5.3513 -0.1810 23 6 7.8779 6.2992 -1.3455 24 7 8.4679 6.3679 -2.5202 25 14 8.4481 7.3998 0.0519 26 1 8.9056 6.5604 1.1882 27 1 9.5701 8.2526 -0.4160 28 1 7.3223 8.2612 0.4946 29 1 -0.3634 -1.0122 0.1776 30 1 -0.3633 0.6599 0.7877 31 1 -0.3633 0.3522 -0.9655 32 1 1.1489 0.5386 2.5436 33 1 2.9387 -1.7176 3.4744 34 1 0.1862 -0.7891 4.6570 35 1 1.2931 -2.0798 5.3709 36 1 3.1442 -0.3617 5.6083 37 1 2.0378 0.9294 4.8944 38 1 1.5313 -2.7858 -1.3533 39 1 0.1020 -1.6756 -1.2077 40 1 0.3855 -1.4209 -3.6323 41 1 2.1581 -1.8303 -3.5344 42 1 2.3042 1.3040 -3.9827 43 1 3.4656 0.0554 -3.4725 44 1 2.9869 1.7733 -1.2826 45 1 4.2075 4.1758 -1.2863 46 1 5.3694 2.9272 -0.7773 47 1 9.1984 6.9904 -2.6603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:57 Heat of formation + Delta-G solvation = -24.632463 kcal Electronic energy + Delta-G solvation = -27375.416791 eV Core-core repulsion = 23492.880254 eV Total energy + Delta-G solvation = -3882.536537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21990 -40.60204 -40.10956 -37.96291 -35.67060 -34.59162 -34.56427 -33.03018 -31.45771 -28.76531 -28.46936 -27.62517 -25.57769 -24.17983 -23.28736 -22.66222 -21.86178 -21.49745 -20.24011 -19.72042 -18.25240 -18.15381 -17.83464 -17.29801 -17.05903 -16.88196 -16.55473 -16.29969 -15.87032 -15.51682 -15.41245 -15.25183 -15.11265 -14.67120 -14.48386 -14.19930 -13.93712 -13.68140 -13.46241 -13.20712 -13.17846 -12.86576 -12.78936 -12.63760 -12.49935 -12.42435 -12.33445 -12.08900 -12.02653 -11.78803 -11.61655 -11.48502 -11.13215 -10.94756 -10.79048 -10.29193 -10.10087 -9.78077 -9.71353 -8.67565 -8.34659 -6.13277 1.25853 1.43751 1.46086 1.54453 1.56230 1.61277 1.93689 2.24425 2.28278 2.95311 2.97467 2.99217 3.31441 3.44354 3.60704 3.71768 3.79431 3.85790 3.94829 4.03588 4.05191 4.06208 4.08776 4.21259 4.26455 4.32822 4.46501 4.48932 4.65126 4.74490 4.75199 4.82591 4.89709 4.90031 5.00850 5.01514 5.05580 5.18849 5.26265 5.27793 5.40788 5.47522 5.50317 5.99331 6.19190 6.46144 6.52265 7.06081 7.22605 7.24592 8.74471 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.002842 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.844870 B = 9850.888073 C =12469.936299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.025 3.975 3 H 0.114 0.886 4 C 0.520 3.480 5 O -0.567 6.567 6 N -0.691 5.691 7 C 0.052 3.948 8 C -0.177 4.177 9 C -0.180 4.180 10 N -0.472 5.472 11 C -0.009 4.009 12 C -0.125 4.125 13 C 0.020 3.980 14 H 0.121 0.879 15 C 0.136 3.864 16 N -0.706 5.706 17 C 0.531 3.469 18 O -0.566 6.566 19 C -0.129 4.129 20 S -0.149 6.149 21 C -0.548 4.548 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.264 1.264 27 H -0.278 1.278 28 H -0.259 1.259 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.416 0.584 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.406 0.594 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.212 -14.918 12.861 32.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.087 4.087 3 H 0.131 0.869 4 C 0.307 3.693 5 O -0.444 6.444 6 N -0.343 5.343 7 C -0.054 4.054 8 C -0.215 4.215 9 C -0.218 4.218 10 N -0.195 5.195 11 C -0.137 4.137 12 C -0.163 4.163 13 C -0.089 4.089 14 H 0.139 0.861 15 C 0.012 3.988 16 N -0.360 5.360 17 C 0.317 3.683 18 O -0.444 6.444 19 C -0.281 4.281 20 S 0.078 5.922 21 C -0.696 4.696 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.184 1.184 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.253 0.747 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.243 0.757 45 H 0.131 0.869 46 H 0.119 0.881 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.195 -15.807 10.937 30.901 hybrid contribution -0.542 1.175 2.244 2.591 sum -24.736 -14.632 13.181 31.618 Atomic orbital electron populations 1.22481 0.91688 1.03992 1.05618 1.22261 0.97136 0.99074 0.90246 0.86861 1.20829 0.79295 0.84143 0.85027 1.90701 1.38589 1.28122 1.87033 1.45266 1.53213 1.31767 1.04012 1.21551 1.02115 1.00450 0.81302 1.23477 0.96125 1.01537 1.00359 1.23454 1.01826 0.98305 0.98258 1.69086 1.44395 1.06435 0.99606 1.24065 0.97883 0.96314 0.95445 1.23151 1.03762 0.93207 0.96160 1.23893 0.96811 0.96763 0.91408 0.86143 1.21440 0.94714 0.90506 0.92126 1.45674 1.34878 1.39250 1.16196 1.20067 0.79730 0.80848 0.87646 1.90685 1.62772 1.69260 1.21682 1.23363 1.02358 1.00610 1.01732 1.85579 1.39368 1.46730 1.20536 1.23172 1.22387 1.24990 0.99031 0.89932 1.26147 0.95274 0.98276 0.99467 1.70179 1.23282 1.36809 1.24518 0.84995 0.78066 0.77568 0.77310 1.18827 1.20354 1.18352 0.91043 0.88812 0.88943 0.74709 0.87299 0.87088 0.87557 0.87621 0.87189 0.91514 0.87413 0.87157 0.89853 0.90683 0.93147 0.75701 0.86908 0.88080 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 7.57 71.98 0.54 -0.49 16 2 C 0.03 0.35 2.66 44.17 0.12 0.47 16 3 H 0.11 1.34 6.22 -2.39 -0.01 1.33 16 4 C 0.52 10.36 7.11 87.66 0.62 10.98 16 5 O -0.57 -17.34 15.87 -3.01 -0.05 -17.38 16 6 N -0.69 -9.43 5.47 -442.53 -2.42 -11.85 16 7 C 0.05 0.78 6.43 44.99 0.29 1.07 16 8 C -0.18 -1.66 10.46 30.59 0.32 -1.34 16 9 C -0.18 -1.87 10.46 30.59 0.32 -1.55 16 10 N -0.47 -8.66 5.47 -880.65 -4.81 -13.47 16 11 C -0.01 -0.13 7.19 83.62 0.60 0.47 16 12 C -0.12 -1.55 8.01 30.98 0.25 -1.30 16 13 C 0.02 0.29 3.06 42.19 0.13 0.42 16 14 H 0.12 1.02 5.91 -2.39 -0.01 1.00 16 15 C 0.14 3.15 5.80 86.38 0.50 3.65 16 16 N -0.71 -19.14 5.47 -463.08 -2.53 -21.67 16 17 C 0.53 20.63 7.85 87.66 0.69 21.32 16 18 O -0.57 -27.28 15.86 -3.03 -0.05 -27.33 16 19 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 20 S -0.15 -8.49 20.57 -56.49 -1.16 -9.66 16 21 C -0.55 -31.76 9.50 67.95 0.65 -31.12 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 25 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 26 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 29 H 0.07 0.48 6.48 -2.39 -0.02 0.47 16 30 H 0.09 0.16 7.86 -2.39 -0.02 0.14 16 31 H 0.09 0.30 5.82 -2.39 -0.01 0.29 16 32 H 0.42 2.85 8.46 -92.71 -0.78 2.07 16 33 H 0.11 2.28 7.40 -2.39 -0.02 2.26 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.11 0.97 4.85 -2.38 -0.01 0.96 16 40 H 0.11 0.75 8.14 -2.38 -0.02 0.74 16 41 H 0.08 1.33 7.95 -2.39 -0.02 1.31 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.43 7.90 -2.39 -0.02 1.41 16 44 H 0.41 8.63 6.21 -92.70 -0.58 8.05 16 45 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 46 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 47 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -87.61 395.00 -3.13 -90.74 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.35 Total: 22.22 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.93 Total: -1.08 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -9.48 Total: -103.42 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.10 Total: -44.71 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -87.61 -3.13 -90.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.109 kcal (2) G-P(sol) polarization free energy of solvation -87.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds