Wall clock time and date at job start Wed Apr 1 2020 00:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47335 * 2 1 4 4 C 1.50695 * 109.47424 * 120.01057 * 2 1 3 5 5 O 1.21278 * 120.00607 * 119.99625 * 4 2 1 6 6 N 1.34783 * 119.99563 * 299.99458 * 4 2 1 7 7 C 1.46497 * 119.99818 * 180.02562 * 6 4 2 8 8 C 1.53003 * 117.49785 * 223.62084 * 7 6 4 9 9 C 1.53002 * 117.49880 * 154.99940 * 7 6 4 10 10 N 1.46904 * 109.46678 * 240.00884 * 2 1 3 11 11 C 1.47960 * 111.00208 * 164.63719 * 10 2 1 12 12 C 1.53935 * 86.17859 * 222.41422 * 11 10 2 13 13 C 1.47955 * 111.00290 * 65.27027 * 10 2 1 14 14 H 1.08994 * 113.85805 * 23.25871 * 13 10 2 15 15 C 1.52996 * 113.76261 * 251.90130 * 13 10 2 16 16 N 1.46499 * 109.47463 * 198.01191 * 15 13 10 17 17 C 1.34779 * 120.00304 * 174.96307 * 16 15 13 18 18 O 1.21279 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99792 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99965 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00068 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00150 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99706 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99981 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47149 * 60.00026 * 25 23 21 27 27 H 1.48499 * 109.47028 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47192 * 299.99555 * 25 23 21 29 29 H 1.09001 * 109.46789 * 294.36449 * 1 2 3 30 30 H 1.09000 * 109.47454 * 54.36252 * 1 2 3 31 31 H 1.09001 * 109.47392 * 174.36724 * 1 2 3 32 32 H 0.96993 * 120.00115 * 0.02562 * 6 4 2 33 33 H 1.09004 * 115.54915 * 9.32821 * 7 6 4 34 34 H 1.08999 * 117.50041 * 0.02562 * 8 7 6 35 35 H 1.09001 * 117.49489 * 145.01780 * 8 7 6 36 36 H 1.09005 * 117.49965 * 214.97744 * 9 7 6 37 37 H 1.09000 * 117.49717 * 359.97369 * 9 7 6 38 38 H 1.08998 * 113.75974 * 108.09169 * 11 10 2 39 39 H 1.09001 * 113.85641 * 336.74036 * 11 10 2 40 40 H 1.09007 * 113.73003 * 269.35759 * 12 11 10 41 41 H 1.08997 * 113.73550 * 138.07739 * 12 11 10 42 42 H 1.08995 * 109.47184 * 78.01381 * 15 13 10 43 43 H 1.08997 * 109.47174 * 318.01188 * 15 13 10 44 44 H 0.97008 * 119.99732 * 354.96618 * 16 15 13 45 45 H 1.09005 * 109.47108 * 299.99956 * 19 17 16 46 46 H 1.08999 * 109.47411 * 59.99994 * 19 17 16 47 47 H 0.97004 * 119.99314 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1189 6 7 1.7069 -0.2502 2.4545 7 6 2.1957 -0.9406 3.6505 8 6 1.2039 -1.1596 4.7948 9 6 2.3197 -0.1225 4.9375 10 7 2.0196 -0.6923 -1.1996 11 6 3.4521 -0.4034 -1.4311 12 6 3.0773 -0.2615 -2.9174 13 6 1.6515 0.0481 -2.4265 14 1 1.4646 1.1091 -2.2618 15 6 0.5552 -0.6302 -3.2504 16 7 0.5599 -0.0870 -4.6109 17 6 -0.2565 -0.6088 -5.5478 18 8 -0.9954 -1.5278 -5.2644 19 6 -0.2512 -0.0502 -6.9475 20 16 -1.4467 -0.9542 -7.9623 21 6 -1.2366 -0.1190 -9.4994 22 1 -0.5255 0.6897 -9.5818 23 6 -1.9857 -0.4997 -10.6042 24 7 -2.8527 -1.4851 -10.5036 25 14 -1.7634 0.3862 -12.2337 26 1 -0.3567 0.2426 -12.6873 27 1 -2.6727 -0.2063 -13.2473 28 1 -2.0838 1.8260 -12.0620 29 1 -0.3633 0.4240 0.9362 30 1 -0.3634 0.5988 -0.8352 31 1 -0.3634 -1.0227 -0.1009 32 1 1.1490 0.5382 2.5436 33 1 2.9403 -1.7169 3.4739 34 1 0.1876 -0.7903 4.6575 35 1 1.2957 -2.0802 5.3711 36 1 3.1456 -0.3608 5.6078 37 1 2.0379 0.9296 4.8941 38 1 4.1096 -1.2474 -1.2226 39 1 3.7941 0.5251 -0.9739 40 1 3.1553 -1.1917 -3.4802 41 1 3.5625 0.5789 -3.4138 42 1 -0.4143 -0.4441 -2.7883 43 1 0.7400 -1.7038 -3.2872 44 1 1.1507 0.6484 -4.8375 45 1 -0.5238 1.0048 -6.9187 46 1 0.7448 -0.1565 -7.3774 47 1 -3.3759 -1.7513 -11.2758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:00 Heat of formation + Delta-G solvation = -8.414188 kcal Electronic energy + Delta-G solvation = -26513.068742 eV Core-core repulsion = 22631.235482 eV Total energy + Delta-G solvation = -3881.833260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13589 -39.69013 -38.82712 -37.40847 -34.51110 -33.91580 -32.41990 -32.40648 -30.18541 -27.92389 -27.23054 -25.47153 -24.74270 -23.31974 -22.93771 -22.08730 -20.79663 -20.35409 -19.92257 -17.94274 -17.60056 -17.30972 -16.42262 -16.23558 -16.13786 -15.50519 -15.17373 -14.98692 -14.79223 -14.66919 -14.55371 -14.07913 -13.79708 -13.66788 -13.29903 -13.09013 -12.86316 -12.65726 -12.47579 -12.43575 -12.20500 -12.13698 -11.84960 -11.68198 -11.49446 -11.25057 -11.06314 -11.02981 -11.02871 -10.85122 -10.75502 -10.11020 -9.80828 -9.38627 -9.26097 -9.14445 -9.04830 -8.83589 -8.21743 -6.48092 -6.19932 -3.90470 2.18741 2.45256 2.96880 3.13967 3.24411 3.25664 3.29815 3.38138 3.48976 3.91364 4.08670 4.20847 4.22034 4.23501 4.38600 4.39637 4.44340 4.52845 4.57294 4.78775 4.84203 4.92118 5.07236 5.15047 5.17359 5.22365 5.26074 5.30648 5.40299 5.43767 5.51882 5.53346 5.59743 5.66189 5.69296 5.85162 5.90996 5.91918 6.01167 6.08833 6.15637 6.55929 6.67731 7.01991 7.60577 7.73370 7.82632 8.36409 8.65113 9.25132 10.87408 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035308 B = 0.001631 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.828550 B =17163.450095 C =17545.251042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.031 3.969 3 H 0.073 0.927 4 C 0.525 3.475 5 O -0.514 6.514 6 N -0.707 5.707 7 C 0.081 3.919 8 C -0.193 4.193 9 C -0.190 4.190 10 N -0.445 5.445 11 C 0.010 3.990 12 C -0.141 4.141 13 C 0.021 3.979 14 H 0.085 0.915 15 C 0.140 3.860 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.400 0.600 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.720 8.814 29.383 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 H 0.091 0.909 4 C 0.311 3.689 5 O -0.387 6.387 6 N -0.358 5.358 7 C -0.025 4.025 8 C -0.232 4.232 9 C -0.229 4.229 10 N -0.168 5.168 11 C -0.118 4.118 12 C -0.179 4.179 13 C -0.088 4.088 14 H 0.103 0.897 15 C 0.016 3.984 16 N -0.392 5.392 17 C 0.318 3.682 18 O -0.390 6.390 19 C -0.303 4.303 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.235 0.765 33 H 0.155 0.845 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.230 0.770 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.622 5.738 29.777 32.476 hybrid contribution 1.142 3.374 -1.183 3.754 sum 12.764 9.112 28.594 32.613 Atomic orbital electron populations 1.21851 0.91497 1.04353 1.02690 1.22220 0.98089 0.96605 0.91259 0.90912 1.20421 0.79971 0.84638 0.83892 1.90718 1.36551 1.25166 1.86307 1.45396 1.53933 1.31726 1.04759 1.21586 1.00979 0.99526 0.80407 1.23430 0.95918 1.01344 1.02482 1.23383 1.01766 0.97631 1.00077 1.68466 1.05683 1.44062 0.98630 1.23827 0.91222 1.01286 0.95481 1.23424 0.94440 1.03445 0.96591 1.23705 0.96151 0.97165 0.91816 0.89719 1.20989 0.97169 0.99017 0.81259 1.45851 1.44035 1.38913 1.10352 1.20277 0.79176 0.82542 0.86172 1.90714 1.39176 1.28035 1.81045 1.23526 1.06678 1.04785 0.95348 1.85418 1.47714 1.45732 1.04440 1.22834 1.27727 1.21933 0.96010 0.90989 1.24987 0.94483 0.95153 0.98911 1.70013 1.22793 1.26404 1.31051 0.86230 0.78251 0.79526 0.81518 1.19949 1.20816 1.19970 0.91735 0.90932 0.90525 0.76515 0.84477 0.88422 0.87910 0.87844 0.88498 0.88525 0.91581 0.88346 0.90512 0.91810 0.90226 0.77002 0.89284 0.89213 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.86 37.16 0.33 -0.66 16 2 C 0.03 0.23 2.08 -68.86 -0.14 0.09 16 3 H 0.07 0.41 7.69 -51.93 -0.40 0.01 16 4 C 0.53 4.88 7.01 -10.99 -0.08 4.81 16 5 O -0.51 -6.92 15.41 5.56 0.09 -6.83 16 6 N -0.71 -4.48 5.42 -53.80 -0.29 -4.77 16 7 C 0.08 0.52 6.43 -67.93 -0.44 0.08 16 8 C -0.19 -0.92 10.46 -26.73 -0.28 -1.20 16 9 C -0.19 -0.79 10.46 -26.73 -0.28 -1.07 16 10 N -0.44 -4.29 5.41 -224.15 -1.21 -5.50 16 11 C 0.01 0.09 7.07 -2.77 -0.02 0.07 16 12 C -0.14 -1.13 7.69 -25.80 -0.20 -1.33 16 13 C 0.02 0.18 2.39 -66.66 -0.16 0.02 16 14 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 15 C 0.14 1.67 5.64 -4.04 -0.02 1.64 16 16 N -0.74 -9.53 5.43 -60.30 -0.33 -9.85 16 17 C 0.53 9.88 7.85 -10.98 -0.09 9.79 16 18 O -0.52 -11.86 15.86 5.56 0.09 -11.77 16 19 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 22 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.06 0.29 7.41 -51.93 -0.38 -0.09 16 30 H 0.07 0.48 6.85 -51.93 -0.36 0.12 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 1.46 8.18 -40.82 -0.33 1.13 16 33 H 0.14 1.10 7.40 -51.93 -0.38 0.72 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.46 7.71 -51.93 -0.40 0.06 16 40 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.79 7.37 -51.93 -0.38 0.41 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.40 3.87 8.44 -40.82 -0.34 3.52 16 45 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -37.10 403.82 -10.61 -47.71 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.59 Total: 1.46 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.95 Total: -3.57 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -1.10 Total: -45.60 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.17 Total: -18.60 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.10 -10.61 -47.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.296 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds