Wall clock time and date at job start Wed Apr 1 2020 00:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47335 * 2 1 4 4 C 1.50695 * 109.47424 * 120.01057 * 2 1 3 5 5 O 1.21278 * 120.00607 * 119.99625 * 4 2 1 6 6 N 1.34783 * 119.99563 * 299.99458 * 4 2 1 7 7 C 1.46497 * 119.99818 * 180.02562 * 6 4 2 8 8 C 1.53003 * 117.49785 * 223.62084 * 7 6 4 9 9 C 1.53002 * 117.49880 * 154.99940 * 7 6 4 10 10 N 1.46904 * 109.46678 * 240.00884 * 2 1 3 11 11 C 1.47960 * 111.00208 * 164.63719 * 10 2 1 12 12 C 1.53935 * 86.17859 * 222.41422 * 11 10 2 13 13 C 1.47955 * 111.00290 * 65.27027 * 10 2 1 14 14 H 1.08994 * 113.85805 * 23.25871 * 13 10 2 15 15 C 1.52996 * 113.76261 * 251.90130 * 13 10 2 16 16 N 1.46499 * 109.47463 * 198.01191 * 15 13 10 17 17 C 1.34779 * 120.00304 * 174.96307 * 16 15 13 18 18 O 1.21279 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99792 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99965 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00068 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00150 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99706 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99981 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47149 * 60.00026 * 25 23 21 27 27 H 1.48499 * 109.47028 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47192 * 299.99555 * 25 23 21 29 29 H 1.09001 * 109.46789 * 294.36449 * 1 2 3 30 30 H 1.09000 * 109.47454 * 54.36252 * 1 2 3 31 31 H 1.09001 * 109.47392 * 174.36724 * 1 2 3 32 32 H 0.96993 * 120.00115 * 0.02562 * 6 4 2 33 33 H 1.09004 * 115.54915 * 9.32821 * 7 6 4 34 34 H 1.08999 * 117.50041 * 0.02562 * 8 7 6 35 35 H 1.09001 * 117.49489 * 145.01780 * 8 7 6 36 36 H 1.09005 * 117.49965 * 214.97744 * 9 7 6 37 37 H 1.09000 * 117.49717 * 359.97369 * 9 7 6 38 38 H 1.08998 * 113.75974 * 108.09169 * 11 10 2 39 39 H 1.09001 * 113.85641 * 336.74036 * 11 10 2 40 40 H 1.09007 * 113.73003 * 269.35759 * 12 11 10 41 41 H 1.08997 * 113.73550 * 138.07739 * 12 11 10 42 42 H 1.08995 * 109.47184 * 78.01381 * 15 13 10 43 43 H 1.08997 * 109.47174 * 318.01188 * 15 13 10 44 44 H 0.97008 * 119.99732 * 354.96618 * 16 15 13 45 45 H 1.09005 * 109.47108 * 299.99956 * 19 17 16 46 46 H 1.08999 * 109.47411 * 59.99994 * 19 17 16 47 47 H 0.97004 * 119.99314 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1189 6 7 1.7069 -0.2502 2.4545 7 6 2.1957 -0.9406 3.6505 8 6 1.2039 -1.1596 4.7948 9 6 2.3197 -0.1225 4.9375 10 7 2.0196 -0.6923 -1.1996 11 6 3.4521 -0.4034 -1.4311 12 6 3.0773 -0.2615 -2.9174 13 6 1.6515 0.0481 -2.4265 14 1 1.4646 1.1091 -2.2618 15 6 0.5552 -0.6302 -3.2504 16 7 0.5599 -0.0870 -4.6109 17 6 -0.2565 -0.6088 -5.5478 18 8 -0.9954 -1.5278 -5.2644 19 6 -0.2512 -0.0502 -6.9475 20 16 -1.4467 -0.9542 -7.9623 21 6 -1.2366 -0.1190 -9.4994 22 1 -0.5255 0.6897 -9.5818 23 6 -1.9857 -0.4997 -10.6042 24 7 -2.8527 -1.4851 -10.5036 25 14 -1.7634 0.3862 -12.2337 26 1 -0.3567 0.2426 -12.6873 27 1 -2.6727 -0.2063 -13.2473 28 1 -2.0838 1.8260 -12.0620 29 1 -0.3633 0.4240 0.9362 30 1 -0.3634 0.5988 -0.8352 31 1 -0.3634 -1.0227 -0.1009 32 1 1.1490 0.5382 2.5436 33 1 2.9403 -1.7169 3.4739 34 1 0.1876 -0.7903 4.6575 35 1 1.2957 -2.0802 5.3711 36 1 3.1456 -0.3608 5.6078 37 1 2.0379 0.9296 4.8941 38 1 4.1096 -1.2474 -1.2226 39 1 3.7941 0.5251 -0.9739 40 1 3.1553 -1.1917 -3.4802 41 1 3.5625 0.5789 -3.4138 42 1 -0.4143 -0.4441 -2.7883 43 1 0.7400 -1.7038 -3.2872 44 1 1.1507 0.6484 -4.8375 45 1 -0.5238 1.0048 -6.9187 46 1 0.7448 -0.1565 -7.3774 47 1 -3.3759 -1.7513 -11.2758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:00 Heat of formation + Delta-G solvation = -38.142137 kcal Electronic energy + Delta-G solvation = -26514.357842 eV Core-core repulsion = 22631.235482 eV Total energy + Delta-G solvation = -3883.122360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83356 -40.62785 -39.98588 -37.96310 -35.73130 -34.62662 -34.55968 -32.98141 -31.57860 -29.03017 -27.92263 -27.60433 -25.39867 -24.16460 -23.28621 -22.61131 -21.79805 -21.34467 -20.68864 -19.80410 -18.35299 -17.96062 -17.71456 -17.34429 -16.91847 -16.85664 -16.48331 -16.23901 -15.87107 -15.62982 -15.33041 -15.20932 -14.79776 -14.65875 -14.60072 -14.32033 -13.75156 -13.56218 -13.36934 -13.23270 -13.14619 -13.03305 -12.85645 -12.80366 -12.59879 -12.50783 -12.35995 -12.11789 -11.90974 -11.72211 -11.61335 -11.47753 -11.10726 -10.99500 -10.79813 -10.24688 -10.09643 -9.82799 -9.72162 -8.64529 -8.32253 -6.10490 1.28170 1.45744 1.48132 1.52510 1.57522 1.64796 1.89459 2.23587 2.30310 2.96078 2.97930 3.01875 3.35771 3.46621 3.56414 3.73187 3.80693 3.91350 4.00363 4.03046 4.05052 4.05950 4.10838 4.21292 4.30628 4.34818 4.54571 4.63479 4.68821 4.72945 4.75200 4.79282 4.84647 4.85037 4.97259 5.01132 5.16799 5.19055 5.23038 5.31159 5.43736 5.46546 5.49487 5.98470 6.21777 6.50763 6.54472 7.08869 7.22490 7.28678 8.76696 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035308 B = 0.001631 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.828550 B =17163.450095 C =17545.251042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.033 3.967 3 H 0.105 0.895 4 C 0.520 3.480 5 O -0.567 6.567 6 N -0.691 5.691 7 C 0.053 3.947 8 C -0.189 4.189 9 C -0.169 4.169 10 N -0.478 5.478 11 C 0.014 3.986 12 C -0.136 4.136 13 C 0.035 3.965 14 H 0.119 0.881 15 C 0.143 3.857 16 N -0.705 5.705 17 C 0.534 3.466 18 O -0.569 6.569 19 C -0.127 4.127 20 S -0.156 6.156 21 C -0.547 4.547 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.261 1.261 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.416 0.584 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.418 0.582 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.972 12.662 30.090 35.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 H 0.123 0.877 4 C 0.307 3.693 5 O -0.445 6.445 6 N -0.342 5.342 7 C -0.053 4.053 8 C -0.228 4.228 9 C -0.207 4.207 10 N -0.202 5.202 11 C -0.114 4.114 12 C -0.174 4.174 13 C -0.075 4.075 14 H 0.136 0.864 15 C 0.019 3.981 16 N -0.360 5.360 17 C 0.320 3.680 18 O -0.447 6.447 19 C -0.278 4.278 20 S 0.071 5.929 21 C -0.695 4.695 22 H 0.103 0.897 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.185 1.185 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.253 0.747 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.255 0.745 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.906 9.660 30.544 34.537 hybrid contribution 0.805 2.158 -1.204 2.599 sum 13.710 11.817 29.340 34.474 Atomic orbital electron populations 1.21852 0.90946 1.02897 1.04374 1.22289 0.98348 0.97573 0.89639 0.87710 1.20822 0.79307 0.84078 0.85099 1.90698 1.39157 1.27533 1.87068 1.45260 1.53218 1.31760 1.03998 1.21575 1.01954 1.00596 0.81217 1.23488 0.96301 1.01900 1.01075 1.23453 1.01375 0.98143 0.97706 1.68386 1.06519 1.45611 0.99711 1.23783 0.90335 1.01359 0.95922 1.23375 0.94194 1.03494 0.96308 1.23632 0.94748 0.98130 0.90941 0.86374 1.20998 0.98600 0.97752 0.80783 1.45491 1.42323 1.38352 1.09807 1.20080 0.79460 0.82051 0.86449 1.90705 1.41751 1.30490 1.81746 1.23357 1.05053 1.04664 0.94765 1.85639 1.51567 1.48720 1.06929 1.23189 1.28004 1.22087 0.96174 0.89731 1.26134 0.93855 0.95860 1.03299 1.70190 1.24020 1.28319 1.32318 0.85001 0.78638 0.78459 0.75875 1.18677 1.20542 1.18531 0.89174 0.90289 0.93367 0.74681 0.87010 0.87624 0.87821 0.87144 0.86885 0.90899 0.89314 0.90490 0.87723 0.92153 0.93297 0.74480 0.86839 0.87087 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.86 71.98 0.64 -1.05 16 2 C 0.03 0.45 2.08 44.17 0.09 0.54 16 3 H 0.11 0.75 7.69 -2.39 -0.02 0.73 16 4 C 0.52 9.42 7.01 87.65 0.61 10.03 16 5 O -0.57 -15.96 15.41 -3.02 -0.05 -16.01 16 6 N -0.69 -7.87 5.42 -442.53 -2.40 -10.27 16 7 C 0.05 0.65 6.43 44.99 0.29 0.94 16 8 C -0.19 -1.57 10.46 30.60 0.32 -1.25 16 9 C -0.17 -1.06 10.46 30.60 0.32 -0.74 16 10 N -0.48 -8.76 5.41 -863.07 -4.67 -13.43 16 11 C 0.01 0.22 7.07 86.41 0.61 0.84 16 12 C -0.14 -1.89 7.69 31.24 0.24 -1.65 16 13 C 0.03 0.51 2.39 45.02 0.11 0.61 16 14 H 0.12 1.01 7.86 -2.39 -0.02 0.99 16 15 C 0.14 3.28 5.64 86.38 0.49 3.77 16 16 N -0.71 -16.90 5.43 -463.07 -2.52 -19.41 16 17 C 0.53 19.52 7.85 87.66 0.69 20.21 16 18 O -0.57 -26.90 15.86 -3.03 -0.05 -26.95 16 19 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 20 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 21 C -0.55 -31.08 9.50 67.95 0.65 -30.44 16 22 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 25 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 H 0.09 0.56 7.41 -2.39 -0.02 0.55 16 30 H 0.08 0.84 6.85 -2.39 -0.02 0.82 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.42 1.96 8.18 -92.71 -0.76 1.20 16 33 H 0.11 1.96 7.40 -2.38 -0.02 1.94 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 0.97 7.71 -2.39 -0.02 0.95 16 40 H 0.08 1.43 8.10 -2.38 -0.02 1.41 16 41 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 1.46 7.37 -2.39 -0.02 1.44 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.42 6.62 8.44 -92.70 -0.78 5.84 16 45 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 46 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 47 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -86.37 403.82 -3.12 -89.50 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.55 Total: 18.45 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.96 Total: -1.47 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -9.30 Total: -99.08 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.09 Total: -42.96 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -86.37 -3.12 -89.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.353 kcal (2) G-P(sol) polarization free energy of solvation -86.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds