Wall clock time and date at job start Wed Apr 1 2020 00:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46736 * 2 1 4 4 C 1.50702 * 109.47124 * 240.00607 * 2 1 3 5 5 O 1.21283 * 119.99222 * 239.99535 * 4 2 1 6 6 N 1.34771 * 120.00595 * 59.99611 * 4 2 1 7 7 C 1.46496 * 120.00385 * 180.02562 * 6 4 2 8 8 C 1.52998 * 117.50150 * 223.62022 * 7 6 4 9 9 C 1.52998 * 60.00230 * 252.51120 * 8 7 6 10 10 N 1.46899 * 109.47207 * 119.99985 * 2 1 3 11 11 C 1.47479 * 111.00053 * 56.49259 * 10 2 1 12 12 C 1.53512 * 87.99771 * 221.26625 * 11 10 2 13 13 C 1.47478 * 111.00230 * 320.51868 * 10 2 1 14 14 H 1.09004 * 113.47680 * 23.93323 * 13 10 2 15 15 C 1.53000 * 113.47371 * 253.47178 * 13 10 2 16 16 N 1.46500 * 109.47348 * 54.99966 * 15 13 10 17 17 C 1.34783 * 119.99643 * 179.97438 * 16 15 13 18 18 O 1.21280 * 120.00174 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99639 * 179.97438 * 17 16 15 20 20 S 1.81002 * 109.47151 * 180.02562 * 19 17 16 21 21 C 1.76202 * 100.00086 * 179.97438 * 20 19 17 22 22 H 1.08011 * 119.99742 * 359.97438 * 21 20 19 23 23 C 1.38790 * 120.00290 * 180.02562 * 21 20 19 24 24 N 1.31637 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00446 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46792 * 59.99562 * 25 23 21 27 27 H 1.48495 * 109.47253 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46601 * 299.99933 * 25 23 21 29 29 H 1.08997 * 109.47676 * 308.96748 * 1 2 3 30 30 H 1.09000 * 109.47513 * 68.97285 * 1 2 3 31 31 H 1.09004 * 109.46891 * 188.97095 * 1 2 3 32 32 H 0.97001 * 119.99756 * 359.97438 * 6 4 2 33 33 H 1.08997 * 115.54720 * 9.33011 * 7 6 4 34 34 H 1.09002 * 117.49396 * 0.02562 * 8 7 6 35 35 H 1.09001 * 117.50129 * 145.01635 * 8 7 6 36 36 H 1.09001 * 117.49614 * 252.50889 * 9 8 7 37 37 H 1.08995 * 117.51908 * 107.47671 * 9 8 7 38 38 H 1.09002 * 113.47136 * 336.06036 * 11 10 2 39 39 H 1.08991 * 113.47933 * 106.46411 * 11 10 2 40 40 H 1.08995 * 114.17178 * 139.69713 * 12 11 10 41 41 H 1.09002 * 114.16881 * 272.40705 * 12 11 10 42 42 H 1.09001 * 109.47231 * 174.99820 * 15 13 10 43 43 H 1.09001 * 109.46869 * 294.99455 * 15 13 10 44 44 H 0.96998 * 119.99864 * 359.97438 * 16 15 13 45 45 H 1.09009 * 109.47295 * 300.00462 * 19 17 16 46 46 H 1.08996 * 109.47257 * 59.99712 * 19 17 16 47 47 H 0.96997 * 120.00088 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7297 -1.6963 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9407 -3.6508 8 6 2.7315 -0.0785 -4.7950 9 6 1.3818 -0.7847 -4.9376 10 7 2.0197 -0.6925 1.1994 11 6 1.4792 -2.0625 1.2764 12 6 1.2774 -1.8406 2.7819 13 6 1.1940 -0.3606 2.3755 14 1 0.1850 -0.0366 2.1202 15 6 1.8876 0.5823 3.3607 16 7 2.3211 1.7916 2.6565 17 6 2.9593 2.7704 3.3284 18 8 3.1750 2.6498 4.5157 19 6 3.4057 4.0141 2.6039 20 16 4.2262 5.1296 3.7695 21 6 4.6327 6.4588 2.6865 22 1 4.3651 6.4049 1.6414 23 6 5.2976 7.5743 3.1760 24 7 5.6242 7.6397 4.4495 25 14 5.7280 8.9837 2.0280 26 1 4.4836 9.5383 1.4371 27 1 6.4297 10.0470 2.7910 28 1 6.6121 8.4863 0.9435 29 1 -0.3634 0.6462 0.7990 30 1 -0.3634 0.3687 -0.9592 31 1 -0.3633 -1.0151 0.1603 32 1 1.1487 0.5386 -2.5436 33 1 2.6783 -1.9014 -3.4744 34 1 2.7221 1.0028 -4.6575 35 1 3.5688 -0.4718 -5.3715 36 1 1.3311 -1.6427 -5.6080 37 1 0.4839 -0.1684 -4.8941 38 1 0.5464 -2.1927 0.7278 39 1 2.2148 -2.8331 1.0458 40 1 0.3460 -2.2503 3.1725 41 1 2.1475 -2.0880 3.3901 42 1 1.1921 0.8539 4.1547 43 1 2.7548 0.0826 3.7925 44 1 2.1489 1.8878 1.7068 45 1 4.1018 3.7423 1.8103 46 1 2.5388 4.5135 2.1713 47 1 6.0885 8.4195 4.7918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:03 Heat of formation + Delta-G solvation = 6.618944 kcal Electronic energy + Delta-G solvation = -27319.819750 eV Core-core repulsion = 23438.638376 eV Total energy + Delta-G solvation = -3881.181374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61987 -39.68237 -38.80458 -37.36710 -34.32805 -33.92763 -32.41842 -32.40763 -30.04265 -28.07571 -27.35908 -25.45926 -25.04745 -23.23901 -22.87397 -22.15014 -20.92020 -20.37948 -19.37823 -17.86468 -17.59372 -17.47909 -16.63348 -16.21859 -15.96886 -15.65031 -15.19226 -14.92866 -14.79011 -14.71350 -14.49922 -14.22027 -13.91587 -13.62307 -13.20985 -13.08522 -13.06569 -12.71498 -12.59365 -12.24358 -12.07473 -11.91826 -11.77026 -11.61283 -11.55963 -11.29546 -11.03183 -11.02762 -11.01274 -10.91937 -10.73544 -10.02036 -9.80371 -9.36324 -9.21643 -9.09732 -9.04505 -8.77837 -8.21092 -6.47301 -6.19606 -3.89936 2.18978 2.50894 3.04807 3.17260 3.24216 3.28102 3.31140 3.43138 3.54351 3.81033 4.04465 4.22235 4.24950 4.28673 4.30677 4.45640 4.46374 4.49757 4.60535 4.74377 4.75241 4.91920 5.10039 5.13377 5.15200 5.21445 5.24017 5.31230 5.40312 5.44989 5.46706 5.55148 5.58374 5.65430 5.71361 5.84593 5.90921 5.96674 5.98929 6.04402 6.15925 6.61250 6.69457 7.03631 7.60630 7.76515 7.82447 8.36622 8.68120 9.25335 10.87772 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.002629 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.296385 B =10646.501304 C =13049.424072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.024 3.976 3 H 0.112 0.888 4 C 0.526 3.474 5 O -0.516 6.516 6 N -0.704 5.704 7 C 0.080 3.920 8 C -0.193 4.193 9 C -0.190 4.190 10 N -0.437 5.437 11 C 0.003 3.997 12 C -0.136 4.136 13 C 0.001 3.999 14 H 0.098 0.902 15 C 0.140 3.860 16 N -0.732 5.732 17 C 0.531 3.469 18 O -0.518 6.518 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.392 0.608 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.168 -20.038 -16.363 29.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.089 4.089 3 H 0.130 0.870 4 C 0.312 3.688 5 O -0.390 6.390 6 N -0.356 5.356 7 C -0.026 4.026 8 C -0.231 4.231 9 C -0.228 4.228 10 N -0.159 5.159 11 C -0.126 4.126 12 C -0.174 4.174 13 C -0.108 4.108 14 H 0.116 0.884 15 C 0.016 3.984 16 N -0.386 5.386 17 C 0.317 3.683 18 O -0.393 6.393 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.226 0.774 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.464 -20.725 -14.130 28.469 hybrid contribution -1.183 1.611 -2.993 3.599 sum -14.647 -19.114 -17.123 29.548 Atomic orbital electron populations 1.22580 0.94698 1.03887 1.03845 1.22242 0.94822 1.00465 0.91369 0.87045 1.20339 0.79964 0.84573 0.83949 1.90718 1.36260 1.25749 1.86287 1.45379 1.53649 1.31812 1.04742 1.21586 1.02115 0.98476 0.80380 1.23442 0.97587 0.99767 1.02341 1.23382 0.95649 1.03817 0.99976 1.69260 1.43204 1.03561 0.99906 1.23762 0.99816 0.93406 0.95577 1.23233 1.03312 0.93967 0.96905 1.24129 0.97415 0.96712 0.92576 0.88431 1.21241 0.99097 0.84462 0.93632 1.45892 1.61485 1.18775 1.12497 1.20276 0.76744 0.83765 0.87515 1.90699 1.54003 1.79352 1.15201 1.23527 1.04283 0.97765 1.04816 1.85402 1.72248 1.14205 1.11359 1.22826 1.44092 1.04484 0.96998 0.91051 1.24988 0.94998 0.98020 0.95579 1.70011 1.37793 1.29674 1.12808 0.86231 0.78644 0.80560 0.80097 1.19981 1.20811 1.19947 0.90038 0.91118 0.90799 0.76394 0.84483 0.88293 0.87876 0.87861 0.88473 0.91094 0.88758 0.90182 0.88274 0.91177 0.90926 0.77423 0.89338 0.89456 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.98 7.90 37.16 0.29 -0.68 16 2 C 0.02 0.19 2.80 -68.87 -0.19 -0.01 16 3 H 0.11 0.84 6.64 -51.93 -0.34 0.50 16 4 C 0.53 5.06 6.91 -10.99 -0.08 4.99 16 5 O -0.52 -6.95 14.53 5.56 0.08 -6.87 16 6 N -0.70 -4.90 5.39 -53.81 -0.29 -5.19 16 7 C 0.08 0.57 6.43 -67.93 -0.44 0.13 16 8 C -0.19 -1.13 10.46 -26.73 -0.28 -1.40 16 9 C -0.19 -0.93 10.46 -26.73 -0.28 -1.21 16 10 N -0.44 -4.29 5.82 -229.66 -1.34 -5.63 16 11 C 0.00 0.02 5.94 -7.55 -0.04 -0.02 16 12 C -0.14 -1.02 8.01 -26.10 -0.21 -1.23 16 13 C 0.00 0.01 3.05 -71.33 -0.22 -0.21 16 14 H 0.10 0.65 4.99 -51.93 -0.26 0.39 16 15 C 0.14 1.67 5.82 -4.04 -0.02 1.65 16 16 N -0.73 -10.14 5.46 -60.29 -0.33 -10.47 16 17 C 0.53 10.18 7.85 -10.98 -0.09 10.10 16 18 O -0.52 -12.05 15.86 5.56 0.09 -11.96 16 19 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 22 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.08 0.38 6.30 -51.93 -0.33 0.06 16 30 H 0.07 0.25 7.33 -51.93 -0.38 -0.13 16 31 H 0.07 0.38 5.62 -51.93 -0.29 0.09 16 32 H 0.40 1.79 8.16 -40.82 -0.33 1.46 16 33 H 0.14 1.17 7.40 -51.93 -0.38 0.79 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.52 5.54 -51.93 -0.29 0.23 16 39 H 0.09 0.99 7.80 -51.93 -0.41 0.58 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.82 7.94 -51.93 -0.41 0.41 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 44 H 0.39 4.44 6.37 -40.82 -0.26 4.18 16 45 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -37.25 391.73 -10.54 -47.79 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.02 Total: 3.31 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.13 Total: -3.89 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -1.22 Total: -46.90 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.17 Total: -18.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.25 -10.54 -47.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.405 kcal (2) G-P(sol) polarization free energy of solvation -37.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds