Wall clock time and date at job start Wed Apr 1 2020 00:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46736 * 2 1 4 4 C 1.50702 * 109.47124 * 240.00607 * 2 1 3 5 5 O 1.21283 * 119.99222 * 239.99535 * 4 2 1 6 6 N 1.34771 * 120.00595 * 59.99611 * 4 2 1 7 7 C 1.46496 * 120.00385 * 180.02562 * 6 4 2 8 8 C 1.52998 * 117.50150 * 223.62022 * 7 6 4 9 9 C 1.52998 * 60.00230 * 252.51120 * 8 7 6 10 10 N 1.46899 * 109.47207 * 119.99985 * 2 1 3 11 11 C 1.47479 * 111.00053 * 56.49259 * 10 2 1 12 12 C 1.53512 * 87.99771 * 221.26625 * 11 10 2 13 13 C 1.47478 * 111.00230 * 320.51868 * 10 2 1 14 14 H 1.09004 * 113.47680 * 23.93323 * 13 10 2 15 15 C 1.53000 * 113.47371 * 253.47178 * 13 10 2 16 16 N 1.46500 * 109.47348 * 54.99966 * 15 13 10 17 17 C 1.34783 * 119.99643 * 179.97438 * 16 15 13 18 18 O 1.21280 * 120.00174 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99639 * 179.97438 * 17 16 15 20 20 S 1.81002 * 109.47151 * 180.02562 * 19 17 16 21 21 C 1.76202 * 100.00086 * 179.97438 * 20 19 17 22 22 H 1.08011 * 119.99742 * 359.97438 * 21 20 19 23 23 C 1.38790 * 120.00290 * 180.02562 * 21 20 19 24 24 N 1.31637 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00446 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46792 * 59.99562 * 25 23 21 27 27 H 1.48495 * 109.47253 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46601 * 299.99933 * 25 23 21 29 29 H 1.08997 * 109.47676 * 308.96748 * 1 2 3 30 30 H 1.09000 * 109.47513 * 68.97285 * 1 2 3 31 31 H 1.09004 * 109.46891 * 188.97095 * 1 2 3 32 32 H 0.97001 * 119.99756 * 359.97438 * 6 4 2 33 33 H 1.08997 * 115.54720 * 9.33011 * 7 6 4 34 34 H 1.09002 * 117.49396 * 0.02562 * 8 7 6 35 35 H 1.09001 * 117.50129 * 145.01635 * 8 7 6 36 36 H 1.09001 * 117.49614 * 252.50889 * 9 8 7 37 37 H 1.08995 * 117.51908 * 107.47671 * 9 8 7 38 38 H 1.09002 * 113.47136 * 336.06036 * 11 10 2 39 39 H 1.08991 * 113.47933 * 106.46411 * 11 10 2 40 40 H 1.08995 * 114.17178 * 139.69713 * 12 11 10 41 41 H 1.09002 * 114.16881 * 272.40705 * 12 11 10 42 42 H 1.09001 * 109.47231 * 174.99820 * 15 13 10 43 43 H 1.09001 * 109.46869 * 294.99455 * 15 13 10 44 44 H 0.96998 * 119.99864 * 359.97438 * 16 15 13 45 45 H 1.09009 * 109.47295 * 300.00462 * 19 17 16 46 46 H 1.08996 * 109.47257 * 59.99712 * 19 17 16 47 47 H 0.96997 * 120.00088 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7297 -1.6963 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9407 -3.6508 8 6 2.7315 -0.0785 -4.7950 9 6 1.3818 -0.7847 -4.9376 10 7 2.0197 -0.6925 1.1994 11 6 1.4792 -2.0625 1.2764 12 6 1.2774 -1.8406 2.7819 13 6 1.1940 -0.3606 2.3755 14 1 0.1850 -0.0366 2.1202 15 6 1.8876 0.5823 3.3607 16 7 2.3211 1.7916 2.6565 17 6 2.9593 2.7704 3.3284 18 8 3.1750 2.6498 4.5157 19 6 3.4057 4.0141 2.6039 20 16 4.2262 5.1296 3.7695 21 6 4.6327 6.4588 2.6865 22 1 4.3651 6.4049 1.6414 23 6 5.2976 7.5743 3.1760 24 7 5.6242 7.6397 4.4495 25 14 5.7280 8.9837 2.0280 26 1 4.4836 9.5383 1.4371 27 1 6.4297 10.0470 2.7910 28 1 6.6121 8.4863 0.9435 29 1 -0.3634 0.6462 0.7990 30 1 -0.3634 0.3687 -0.9592 31 1 -0.3633 -1.0151 0.1603 32 1 1.1487 0.5386 -2.5436 33 1 2.6783 -1.9014 -3.4744 34 1 2.7221 1.0028 -4.6575 35 1 3.5688 -0.4718 -5.3715 36 1 1.3311 -1.6427 -5.6080 37 1 0.4839 -0.1684 -4.8941 38 1 0.5464 -2.1927 0.7278 39 1 2.2148 -2.8331 1.0458 40 1 0.3460 -2.2503 3.1725 41 1 2.1475 -2.0880 3.3901 42 1 1.1921 0.8539 4.1547 43 1 2.7548 0.0826 3.7925 44 1 2.1489 1.8878 1.7068 45 1 4.1018 3.7423 1.8103 46 1 2.5388 4.5135 2.1713 47 1 6.0885 8.4195 4.7918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:02 Heat of formation + Delta-G solvation = -23.394429 kcal Electronic energy + Delta-G solvation = -27321.121227 eV Core-core repulsion = 23438.638376 eV Total energy + Delta-G solvation = -3882.482852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31570 -40.59600 -40.05287 -37.96417 -35.60159 -34.61968 -34.57490 -33.00899 -31.47538 -28.95749 -28.22537 -27.60664 -25.65563 -24.10051 -23.28835 -22.69926 -21.82437 -21.56199 -20.21446 -19.70463 -18.25310 -18.19093 -17.79659 -17.30394 -17.04149 -16.87136 -16.55745 -16.27350 -15.86667 -15.58206 -15.37759 -15.31510 -15.01040 -14.63098 -14.45814 -14.18687 -13.99781 -13.65185 -13.45995 -13.22358 -13.16483 -12.91470 -12.85605 -12.63111 -12.50904 -12.37486 -12.34035 -12.13895 -11.94317 -11.79347 -11.65389 -11.48112 -11.12223 -10.94327 -10.72629 -10.27303 -10.07651 -9.82236 -9.71222 -8.66133 -8.33636 -6.12010 1.27172 1.44419 1.47187 1.50346 1.56948 1.63677 1.93026 2.25534 2.29631 2.93809 2.97061 3.00248 3.32990 3.43271 3.61465 3.70802 3.79809 3.90165 3.94937 4.02661 4.04137 4.06708 4.11538 4.17359 4.28819 4.30547 4.49207 4.52272 4.65262 4.75025 4.78088 4.82411 4.84553 4.92393 5.00619 5.01660 5.08400 5.18546 5.24696 5.30112 5.41889 5.47836 5.49078 5.97964 6.20225 6.48067 6.49768 7.07224 7.19319 7.25451 8.75386 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.002629 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.296385 B =10646.501304 C =13049.424072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.023 3.977 3 H 0.116 0.884 4 C 0.521 3.479 5 O -0.565 6.565 6 N -0.690 5.690 7 C 0.055 3.945 8 C -0.193 4.193 9 C -0.167 4.167 10 N -0.469 5.469 11 C 0.008 3.992 12 C -0.128 4.128 13 C 0.013 3.987 14 H 0.127 0.873 15 C 0.138 3.862 16 N -0.705 5.705 17 C 0.531 3.469 18 O -0.566 6.566 19 C -0.129 4.129 20 S -0.151 6.151 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.415 0.585 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.408 0.592 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 -19.532 -19.136 32.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.089 4.089 3 H 0.134 0.866 4 C 0.308 3.692 5 O -0.442 6.442 6 N -0.342 5.342 7 C -0.051 4.051 8 C -0.232 4.232 9 C -0.205 4.205 10 N -0.192 5.192 11 C -0.121 4.121 12 C -0.166 4.166 13 C -0.096 4.096 14 H 0.144 0.856 15 C 0.014 3.986 16 N -0.359 5.359 17 C 0.317 3.683 18 O -0.445 6.445 19 C -0.280 4.280 20 S 0.076 5.924 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.184 1.184 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.253 0.747 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.244 0.756 45 H 0.122 0.878 46 H 0.131 0.869 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.862 -20.231 -16.976 30.807 hybrid contribution -0.474 1.322 -2.214 2.622 sum -16.337 -18.909 -19.189 31.507 Atomic orbital electron populations 1.22566 0.92061 1.04384 1.05429 1.22301 0.96866 0.99906 0.89835 0.86595 1.20729 0.79358 0.84084 0.85062 1.90703 1.38580 1.27975 1.86987 1.45267 1.52995 1.31849 1.04056 1.21577 1.04176 0.98204 0.81149 1.23491 0.98508 0.99806 1.01365 1.23450 0.95549 1.03808 0.97714 1.69194 1.44560 1.04411 1.01050 1.23692 0.99686 0.92229 0.96465 1.23216 1.04105 0.93197 0.96098 1.24128 0.97901 0.96135 0.91387 0.85571 1.21411 0.98646 0.83811 0.94772 1.45655 1.59205 1.17908 1.13128 1.20075 0.77071 0.84267 0.86871 1.90688 1.56328 1.80289 1.17192 1.23365 1.04711 0.96941 1.03007 1.85599 1.73993 1.16960 1.15836 1.23170 1.44224 1.04679 0.97351 0.89879 1.26145 0.94572 1.01160 0.97350 1.70184 1.38762 1.30712 1.15153 0.84997 0.78896 0.76406 0.77652 1.18417 1.20452 1.18780 0.88929 0.89196 0.90634 0.74721 0.86757 0.87914 0.87812 0.87003 0.86918 0.89389 0.91414 0.87489 0.89612 0.90789 0.93049 0.75552 0.87824 0.86913 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 7.90 71.98 0.57 -0.65 16 2 C 0.02 0.32 2.80 44.17 0.12 0.44 16 3 H 0.12 1.44 6.64 -2.38 -0.02 1.42 16 4 C 0.52 9.56 6.91 87.66 0.61 10.16 16 5 O -0.56 -15.58 14.53 -3.04 -0.04 -15.62 16 6 N -0.69 -8.52 5.39 -442.55 -2.39 -10.91 16 7 C 0.05 0.73 6.43 44.99 0.29 1.02 16 8 C -0.19 -1.97 10.46 30.59 0.32 -1.65 16 9 C -0.17 -1.25 10.46 30.59 0.32 -0.93 16 10 N -0.47 -8.61 5.82 -880.50 -5.13 -13.74 16 11 C 0.01 0.12 5.94 83.58 0.50 0.62 16 12 C -0.13 -1.72 8.01 31.00 0.25 -1.47 16 13 C 0.01 0.20 3.05 42.25 0.13 0.33 16 14 H 0.13 1.17 4.99 -2.39 -0.01 1.16 16 15 C 0.14 3.12 5.82 86.38 0.50 3.62 16 16 N -0.71 -18.40 5.46 -463.05 -2.53 -20.93 16 17 C 0.53 20.12 7.85 87.66 0.69 20.81 16 18 O -0.57 -26.91 15.86 -3.03 -0.05 -26.96 16 19 C -0.13 -5.18 6.16 71.24 0.44 -4.75 16 20 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 21 C -0.55 -31.33 9.50 67.95 0.65 -30.68 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.71 5.49 84.85 0.47 1.18 16 24 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 25 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 29 H 0.09 0.44 6.30 -2.39 -0.02 0.43 16 30 H 0.09 0.27 7.33 -2.39 -0.02 0.25 16 31 H 0.07 0.51 5.62 -2.38 -0.01 0.50 16 32 H 0.42 2.58 8.16 -92.71 -0.76 1.82 16 33 H 0.11 2.06 7.40 -2.39 -0.02 2.04 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 1.10 5.54 -2.39 -0.01 1.09 16 39 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 40 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.09 1.40 7.94 -2.39 -0.02 1.38 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.05 1.41 7.88 -2.39 -0.02 1.40 16 44 H 0.41 8.15 6.37 -92.71 -0.59 7.56 16 45 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 46 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 47 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -85.08 391.73 -3.48 -88.56 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.34 Total: 21.73 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 5.84 Total: -1.96 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -9.76 Total: -101.69 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.09 Total: -42.58 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -85.08 -3.48 -88.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.166 kcal (2) G-P(sol) polarization free energy of solvation -85.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds