Wall clock time and date at job start Wed Apr 1 2020 00:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47559 * 2 1 4 4 C 1.50703 * 109.47327 * 239.99845 * 2 1 3 5 5 O 1.21280 * 120.00111 * 240.00544 * 4 2 1 6 6 N 1.34777 * 119.99466 * 59.99690 * 4 2 1 7 7 C 1.46509 * 119.99817 * 180.02562 * 6 4 2 8 8 C 1.52995 * 117.49885 * 223.62566 * 7 6 4 9 9 C 1.52999 * 117.49624 * 155.00143 * 7 6 4 10 10 N 1.46899 * 109.47433 * 120.00303 * 2 1 3 11 11 C 1.48194 * 111.07495 * 195.14958 * 10 2 1 12 12 C 1.53936 * 86.10241 * 137.51576 * 11 10 2 13 13 C 1.47962 * 110.99977 * 294.57904 * 10 2 1 14 14 H 1.09007 * 113.85811 * 336.74590 * 13 10 2 15 15 C 1.52995 * 113.76184 * 108.09568 * 13 10 2 16 16 N 1.46497 * 109.47397 * 161.82193 * 15 13 10 17 17 C 1.34782 * 120.00222 * 185.05348 * 16 15 13 18 18 O 1.21283 * 119.99700 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00363 * 179.97438 * 17 16 15 20 20 S 1.80992 * 109.47489 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00038 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00441 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99966 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99955 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99925 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47081 * 60.00105 * 25 23 21 27 27 H 1.48503 * 109.47140 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47297 * 299.99544 * 25 23 21 29 29 H 1.09000 * 109.47588 * 65.59728 * 1 2 3 30 30 H 1.09004 * 109.47322 * 185.59923 * 1 2 3 31 31 H 1.09002 * 109.47031 * 305.59765 * 1 2 3 32 32 H 0.96994 * 120.00901 * 0.02562 * 6 4 2 33 33 H 1.08998 * 115.54774 * 9.33450 * 7 6 4 34 34 H 1.08995 * 117.49859 * 359.97438 * 8 7 6 35 35 H 1.08996 * 117.49970 * 145.02106 * 8 7 6 36 36 H 1.09007 * 117.49342 * 214.98062 * 9 7 6 37 37 H 1.08993 * 117.50089 * 359.97438 * 9 7 6 38 38 H 1.08998 * 113.75643 * 23.22931 * 11 10 2 39 39 H 1.08999 * 113.82337 * 251.80940 * 11 10 2 40 40 H 1.09000 * 113.72831 * 221.95717 * 12 11 10 41 41 H 1.08993 * 113.73153 * 90.78135 * 12 11 10 42 42 H 1.08996 * 109.47544 * 281.82330 * 15 13 10 43 43 H 1.09002 * 109.47133 * 41.82047 * 15 13 10 44 44 H 0.97000 * 120.00009 * 5.04659 * 16 15 13 45 45 H 1.09005 * 109.46936 * 300.00379 * 19 17 16 46 46 H 1.09001 * 109.46655 * 59.99490 * 19 17 16 47 47 H 0.97001 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7066 -0.2500 -2.4545 7 6 2.1946 -0.9409 -3.6508 8 6 2.7315 -0.0787 -4.7949 9 6 1.3817 -0.7849 -4.9376 10 7 2.0197 -0.6925 1.1994 11 6 3.4557 -0.4083 1.4298 12 6 3.0805 -0.2624 2.9156 13 6 1.6547 0.0495 2.4263 14 1 1.4697 1.1110 2.2610 15 6 0.5580 -0.6258 3.2521 16 7 0.5682 -0.0845 4.6133 17 6 -0.2474 -0.6048 5.5517 18 8 -0.9902 -1.5209 5.2689 19 6 -0.2366 -0.0484 6.9521 20 16 -1.4324 -0.9496 7.9688 21 6 -1.2153 -0.1173 9.5065 22 1 -0.5013 0.6889 9.5882 23 6 -1.9620 -0.4977 10.6130 24 7 -2.8319 -1.4806 10.5137 25 14 -1.7323 0.3851 12.2432 26 1 -2.0493 1.8261 12.0746 27 1 -2.6409 -0.2056 13.2584 28 1 -0.3247 0.2372 12.6923 29 1 -0.3634 0.4246 -0.9358 30 1 -0.3634 -1.0228 0.1003 31 1 -0.3633 0.5982 0.8356 32 1 1.1493 0.5388 -2.5436 33 1 2.6782 -1.9017 -3.4743 34 1 2.7214 1.0025 -4.6579 35 1 3.5687 -0.4721 -5.3714 36 1 1.3310 -1.6430 -5.6079 37 1 0.4838 -0.1686 -4.8940 38 1 3.7991 0.5186 0.9705 39 1 4.1107 -1.2547 1.2233 40 1 3.5680 0.5773 3.4107 41 1 3.1569 -1.1914 3.4805 42 1 -0.4119 -0.4356 2.7927 43 1 0.7390 -1.7002 3.2869 44 1 1.1621 0.6484 4.8393 45 1 0.7603 -0.1587 7.3791 46 1 -0.5055 1.0076 6.9255 47 1 -3.3539 -1.7462 11.2869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:05 Heat of formation + Delta-G solvation = -8.537276 kcal Electronic energy + Delta-G solvation = -26507.508711 eV Core-core repulsion = 22625.670113 eV Total energy + Delta-G solvation = -3881.838597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12167 -39.68630 -38.82336 -37.41156 -34.51003 -33.91608 -32.41935 -32.40588 -30.18318 -27.91820 -27.23285 -25.47174 -24.74549 -23.32071 -22.94304 -22.08125 -20.80234 -20.35199 -19.91999 -17.93998 -17.59844 -17.30081 -16.44312 -16.24042 -16.13917 -15.49948 -15.15025 -14.98190 -14.79205 -14.71042 -14.55627 -14.04266 -13.80527 -13.64836 -13.32012 -13.08391 -12.87156 -12.64996 -12.47391 -12.43105 -12.20533 -12.14835 -11.85734 -11.68358 -11.48948 -11.25183 -11.06683 -11.02997 -11.02859 -10.85218 -10.75524 -10.11061 -9.80832 -9.38620 -9.25525 -9.14883 -9.04817 -8.83566 -8.21738 -6.48083 -6.19916 -3.90457 2.18572 2.45357 2.96773 3.13948 3.24424 3.25597 3.29798 3.37658 3.48785 3.91174 4.08828 4.21112 4.22047 4.23107 4.36929 4.41311 4.43793 4.52527 4.57561 4.78782 4.84465 4.92388 5.07016 5.15045 5.17459 5.22185 5.25923 5.30356 5.40018 5.43810 5.51058 5.53463 5.59805 5.66158 5.69277 5.85230 5.91033 5.91931 6.00950 6.08654 6.15643 6.55909 6.67734 7.01961 7.60605 7.73386 7.82572 8.36426 8.65108 9.25133 10.87423 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036462 B = 0.001625 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.729300 B =17230.013886 C =17589.074025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.031 3.969 3 H 0.073 0.927 4 C 0.525 3.475 5 O -0.514 6.514 6 N -0.706 5.706 7 C 0.081 3.919 8 C -0.194 4.194 9 C -0.189 4.189 10 N -0.445 5.445 11 C 0.011 3.989 12 C -0.141 4.141 13 C 0.021 3.979 14 H 0.085 0.915 15 C 0.140 3.860 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.400 0.600 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.397 0.603 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.728 8.819 -29.413 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 H 0.091 0.909 4 C 0.311 3.689 5 O -0.387 6.387 6 N -0.358 5.358 7 C -0.025 4.025 8 C -0.233 4.233 9 C -0.228 4.228 10 N -0.169 5.169 11 C -0.118 4.118 12 C -0.179 4.179 13 C -0.088 4.088 14 H 0.103 0.897 15 C 0.016 3.984 16 N -0.391 5.391 17 C 0.318 3.682 18 O -0.390 6.390 19 C -0.303 4.303 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.230 0.770 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.616 5.745 -29.805 32.501 hybrid contribution 1.185 3.391 1.182 3.781 sum 12.801 9.136 -28.623 32.659 Atomic orbital electron populations 1.21849 0.91487 1.04356 1.02700 1.22217 0.98090 0.96598 0.91251 0.90935 1.20424 0.79949 0.84655 0.83894 1.90718 1.36509 1.25207 1.86308 1.45397 1.53864 1.31788 1.04758 1.21590 1.02057 0.98403 0.80426 1.23429 0.97784 0.99498 1.02593 1.23381 0.95486 1.03808 1.00082 1.68499 1.05750 1.44030 0.98625 1.23864 0.91138 1.01304 0.95450 1.23417 0.94445 1.03438 0.96609 1.23699 0.96144 0.97153 0.91824 0.89728 1.20989 0.97160 0.99057 0.81226 1.45849 1.43892 1.39163 1.10245 1.20279 0.79214 0.82494 0.86182 1.90715 1.38978 1.28157 1.81123 1.23524 1.06687 1.04789 0.95340 1.85415 1.47548 1.46054 1.04279 1.22834 1.27625 1.22152 0.95899 0.90989 1.24987 0.94491 0.95140 0.98913 1.70010 1.22743 1.26494 1.31015 0.86230 0.78256 0.79521 0.81520 1.19974 1.20815 1.19945 0.91716 0.90522 0.90938 0.76515 0.84447 0.88553 0.87955 0.87785 0.88414 0.91582 0.88498 0.90529 0.88357 0.91809 0.90223 0.77004 0.89214 0.89284 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.87 37.15 0.33 -0.66 16 2 C 0.03 0.24 2.08 -68.87 -0.14 0.09 16 3 H 0.07 0.41 7.69 -51.93 -0.40 0.01 16 4 C 0.53 4.88 7.01 -10.98 -0.08 4.80 16 5 O -0.51 -6.91 15.40 5.56 0.09 -6.83 16 6 N -0.71 -4.47 5.42 -53.80 -0.29 -4.76 16 7 C 0.08 0.52 6.43 -67.93 -0.44 0.08 16 8 C -0.19 -0.86 10.46 -26.73 -0.28 -1.14 16 9 C -0.19 -0.82 10.46 -26.73 -0.28 -1.10 16 10 N -0.45 -4.29 5.41 -223.89 -1.21 -5.50 16 11 C 0.01 0.09 7.08 -2.63 -0.02 0.07 16 12 C -0.14 -1.13 7.68 -25.80 -0.20 -1.33 16 13 C 0.02 0.18 2.40 -66.65 -0.16 0.02 16 14 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 15 C 0.14 1.67 5.65 -4.05 -0.02 1.64 16 16 N -0.74 -9.53 5.43 -60.30 -0.33 -9.86 16 17 C 0.53 9.88 7.85 -10.98 -0.09 9.79 16 18 O -0.52 -11.85 15.86 5.55 0.09 -11.77 16 19 C -0.15 -3.05 6.15 36.00 0.22 -2.83 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.29 7.41 -51.93 -0.38 -0.10 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.48 6.85 -51.93 -0.36 0.12 16 32 H 0.40 1.46 8.18 -40.82 -0.33 1.13 16 33 H 0.14 1.12 7.40 -51.93 -0.38 0.73 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.40 8.14 -51.92 -0.42 -0.03 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.46 7.72 -51.93 -0.40 0.06 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.40 3.87 8.44 -40.82 -0.34 3.53 16 45 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 46 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -37.07 403.85 -10.61 -47.69 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.59 Total: 1.44 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.95 Total: -3.53 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -1.10 Total: -45.60 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.17 Total: -18.59 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.07 -10.61 -47.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.150 kcal (2) G-P(sol) polarization free energy of solvation -37.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds