Wall clock time and date at job start Wed Apr 1 2020 00:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47559 * 2 1 4 4 C 1.50703 * 109.47327 * 239.99845 * 2 1 3 5 5 O 1.21280 * 120.00111 * 240.00544 * 4 2 1 6 6 N 1.34777 * 119.99466 * 59.99690 * 4 2 1 7 7 C 1.46509 * 119.99817 * 180.02562 * 6 4 2 8 8 C 1.52995 * 117.49885 * 223.62566 * 7 6 4 9 9 C 1.52999 * 117.49624 * 155.00143 * 7 6 4 10 10 N 1.46899 * 109.47433 * 120.00303 * 2 1 3 11 11 C 1.48194 * 111.07495 * 195.14958 * 10 2 1 12 12 C 1.53936 * 86.10241 * 137.51576 * 11 10 2 13 13 C 1.47962 * 110.99977 * 294.57904 * 10 2 1 14 14 H 1.09007 * 113.85811 * 336.74590 * 13 10 2 15 15 C 1.52995 * 113.76184 * 108.09568 * 13 10 2 16 16 N 1.46497 * 109.47397 * 161.82193 * 15 13 10 17 17 C 1.34782 * 120.00222 * 185.05348 * 16 15 13 18 18 O 1.21283 * 119.99700 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00363 * 179.97438 * 17 16 15 20 20 S 1.80992 * 109.47489 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00038 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00441 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99966 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99955 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99925 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47081 * 60.00105 * 25 23 21 27 27 H 1.48503 * 109.47140 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47297 * 299.99544 * 25 23 21 29 29 H 1.09000 * 109.47588 * 65.59728 * 1 2 3 30 30 H 1.09004 * 109.47322 * 185.59923 * 1 2 3 31 31 H 1.09002 * 109.47031 * 305.59765 * 1 2 3 32 32 H 0.96994 * 120.00901 * 0.02562 * 6 4 2 33 33 H 1.08998 * 115.54774 * 9.33450 * 7 6 4 34 34 H 1.08995 * 117.49859 * 359.97438 * 8 7 6 35 35 H 1.08996 * 117.49970 * 145.02106 * 8 7 6 36 36 H 1.09007 * 117.49342 * 214.98062 * 9 7 6 37 37 H 1.08993 * 117.50089 * 359.97438 * 9 7 6 38 38 H 1.08998 * 113.75643 * 23.22931 * 11 10 2 39 39 H 1.08999 * 113.82337 * 251.80940 * 11 10 2 40 40 H 1.09000 * 113.72831 * 221.95717 * 12 11 10 41 41 H 1.08993 * 113.73153 * 90.78135 * 12 11 10 42 42 H 1.08996 * 109.47544 * 281.82330 * 15 13 10 43 43 H 1.09002 * 109.47133 * 41.82047 * 15 13 10 44 44 H 0.97000 * 120.00009 * 5.04659 * 16 15 13 45 45 H 1.09005 * 109.46936 * 300.00379 * 19 17 16 46 46 H 1.09001 * 109.46655 * 59.99490 * 19 17 16 47 47 H 0.97001 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7066 -0.2500 -2.4545 7 6 2.1946 -0.9409 -3.6508 8 6 2.7315 -0.0787 -4.7949 9 6 1.3817 -0.7849 -4.9376 10 7 2.0197 -0.6925 1.1994 11 6 3.4557 -0.4083 1.4298 12 6 3.0805 -0.2624 2.9156 13 6 1.6547 0.0495 2.4263 14 1 1.4697 1.1110 2.2610 15 6 0.5580 -0.6258 3.2521 16 7 0.5682 -0.0845 4.6133 17 6 -0.2474 -0.6048 5.5517 18 8 -0.9902 -1.5209 5.2689 19 6 -0.2366 -0.0484 6.9521 20 16 -1.4324 -0.9496 7.9688 21 6 -1.2153 -0.1173 9.5065 22 1 -0.5013 0.6889 9.5882 23 6 -1.9620 -0.4977 10.6130 24 7 -2.8319 -1.4806 10.5137 25 14 -1.7323 0.3851 12.2432 26 1 -2.0493 1.8261 12.0746 27 1 -2.6409 -0.2056 13.2584 28 1 -0.3247 0.2372 12.6923 29 1 -0.3634 0.4246 -0.9358 30 1 -0.3634 -1.0228 0.1003 31 1 -0.3633 0.5982 0.8356 32 1 1.1493 0.5388 -2.5436 33 1 2.6782 -1.9017 -3.4743 34 1 2.7214 1.0025 -4.6579 35 1 3.5687 -0.4721 -5.3714 36 1 1.3310 -1.6430 -5.6079 37 1 0.4838 -0.1686 -4.8940 38 1 3.7991 0.5186 0.9705 39 1 4.1107 -1.2547 1.2233 40 1 3.5680 0.5773 3.4107 41 1 3.1569 -1.1914 3.4805 42 1 -0.4119 -0.4356 2.7927 43 1 0.7390 -1.7002 3.2869 44 1 1.1621 0.6484 4.8393 45 1 0.7603 -0.1587 7.3791 46 1 -0.5055 1.0076 6.9255 47 1 -3.3539 -1.7462 11.2869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:04 Heat of formation + Delta-G solvation = -38.236497 kcal Electronic energy + Delta-G solvation = -26508.796565 eV Core-core repulsion = 22625.670113 eV Total energy + Delta-G solvation = -3883.126452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81979 -40.62694 -39.97780 -37.96341 -35.72933 -34.62681 -34.55954 -32.97924 -31.57705 -29.02557 -27.92333 -27.60477 -25.40049 -24.16621 -23.28434 -22.60417 -21.79816 -21.34898 -20.68614 -19.80369 -18.34615 -17.95489 -17.71225 -17.34473 -16.94424 -16.85667 -16.49686 -16.20963 -15.87150 -15.56839 -15.41098 -15.20855 -14.80346 -14.62867 -14.58791 -14.31638 -13.76021 -13.56186 -13.36921 -13.22861 -13.14624 -13.02914 -12.85693 -12.80442 -12.59859 -12.51369 -12.36149 -12.11448 -11.91201 -11.72202 -11.61564 -11.47646 -11.10712 -10.99497 -10.79798 -10.24681 -10.09626 -9.81767 -9.72824 -8.64507 -8.32229 -6.10467 1.28177 1.45750 1.48117 1.52507 1.57527 1.64782 1.89573 2.23541 2.30317 2.95713 2.97706 3.01879 3.35762 3.46812 3.56537 3.72986 3.80631 3.91386 4.00500 4.02487 4.04833 4.06948 4.10882 4.21487 4.30707 4.34810 4.54568 4.63643 4.68746 4.72945 4.75129 4.79414 4.84806 4.85169 4.97262 5.01069 5.16838 5.19163 5.23101 5.30949 5.43767 5.46450 5.49428 5.98336 6.21795 6.50809 6.54468 7.08875 7.22527 7.28673 8.76718 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036462 B = 0.001625 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.729300 B =17230.013886 C =17589.074025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.034 3.966 3 H 0.105 0.895 4 C 0.520 3.480 5 O -0.567 6.567 6 N -0.690 5.690 7 C 0.052 3.948 8 C -0.181 4.181 9 C -0.176 4.176 10 N -0.478 5.478 11 C 0.015 3.985 12 C -0.136 4.136 13 C 0.035 3.965 14 H 0.119 0.881 15 C 0.143 3.857 16 N -0.705 5.705 17 C 0.534 3.466 18 O -0.569 6.569 19 C -0.127 4.127 20 S -0.156 6.156 21 C -0.547 4.547 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.418 0.582 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.987 12.665 -30.126 35.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 H 0.122 0.878 4 C 0.307 3.693 5 O -0.445 6.445 6 N -0.342 5.342 7 C -0.054 4.054 8 C -0.219 4.219 9 C -0.214 4.214 10 N -0.203 5.203 11 C -0.113 4.113 12 C -0.174 4.174 13 C -0.074 4.074 14 H 0.136 0.864 15 C 0.019 3.981 16 N -0.360 5.360 17 C 0.320 3.680 18 O -0.447 6.447 19 C -0.278 4.278 20 S 0.072 5.928 21 C -0.695 4.695 22 H 0.103 0.897 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.185 1.185 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.253 0.747 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.255 0.745 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.907 9.665 -30.577 34.568 hybrid contribution 0.846 2.176 1.203 2.626 sum 13.753 11.841 -29.374 34.528 Atomic orbital electron populations 1.21851 0.90927 1.02910 1.04382 1.22286 0.98358 0.97555 0.89633 0.87752 1.20824 0.79289 0.84098 0.85100 1.90699 1.39125 1.27569 1.87069 1.45260 1.53151 1.31822 1.03995 1.21571 1.04298 0.98329 0.81221 1.23482 0.98017 0.99859 1.00582 1.23456 0.95944 1.03975 0.98012 1.68418 1.06576 1.45576 0.99708 1.23818 0.90266 1.01356 0.95904 1.23368 0.94206 1.03491 0.96313 1.23626 0.94740 0.98122 0.90946 0.86390 1.20998 0.98598 0.97784 0.80750 1.45489 1.42194 1.38588 1.09702 1.20080 0.79493 0.82006 0.86461 1.90706 1.41552 1.30612 1.81821 1.23355 1.05057 1.04683 0.94750 1.85636 1.51408 1.49023 1.06772 1.23189 1.27902 1.22305 0.96064 0.89732 1.26134 0.93869 0.95836 1.03303 1.70187 1.23976 1.28403 1.32280 0.85002 0.78639 0.78463 0.75873 1.18541 1.20541 1.18668 0.89147 0.93348 0.90305 0.74680 0.87138 0.87321 0.87600 0.87404 0.87055 0.89341 0.90871 0.87743 0.90492 0.92141 0.93291 0.74486 0.87091 0.86840 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.87 71.98 0.64 -1.05 16 2 C 0.03 0.45 2.08 44.17 0.09 0.54 16 3 H 0.11 0.75 7.69 -2.39 -0.02 0.73 16 4 C 0.52 9.43 7.01 87.66 0.61 10.04 16 5 O -0.57 -15.97 15.40 -3.03 -0.05 -16.02 16 6 N -0.69 -7.88 5.42 -442.52 -2.40 -10.28 16 7 C 0.05 0.64 6.43 44.99 0.29 0.93 16 8 C -0.18 -1.29 10.46 30.59 0.32 -0.97 16 9 C -0.18 -1.23 10.46 30.59 0.32 -0.91 16 10 N -0.48 -8.78 5.41 -862.26 -4.67 -13.44 16 11 C 0.01 0.23 7.08 86.36 0.61 0.84 16 12 C -0.14 -1.90 7.68 31.24 0.24 -1.66 16 13 C 0.03 0.51 2.40 45.02 0.11 0.62 16 14 H 0.12 1.01 7.86 -2.38 -0.02 0.99 16 15 C 0.14 3.28 5.65 86.38 0.49 3.77 16 16 N -0.71 -16.90 5.43 -463.07 -2.51 -19.42 16 17 C 0.53 19.52 7.85 87.66 0.69 20.21 16 18 O -0.57 -26.90 15.86 -3.04 -0.05 -26.95 16 19 C -0.13 -4.93 6.15 71.24 0.44 -4.49 16 20 S -0.16 -8.65 20.57 -56.49 -1.16 -9.81 16 21 C -0.55 -31.09 9.50 67.96 0.65 -30.44 16 22 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 25 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 28 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 29 H 0.09 0.56 7.41 -2.39 -0.02 0.54 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.84 6.85 -2.39 -0.02 0.82 16 32 H 0.42 1.96 8.18 -92.71 -0.76 1.20 16 33 H 0.11 1.97 7.40 -2.39 -0.02 1.96 16 34 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.98 7.72 -2.39 -0.02 0.96 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 42 H 0.06 1.46 7.38 -2.39 -0.02 1.44 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.42 6.63 8.44 -92.71 -0.78 5.85 16 45 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 46 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 47 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -86.32 403.85 -3.12 -89.43 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.55 Total: 18.41 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.96 Total: -1.35 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -9.29 Total: -99.09 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.09 Total: -42.96 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -86.32 -3.12 -89.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.198 kcal (2) G-P(sol) polarization free energy of solvation -86.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds