Wall clock time and date at job start Wed Apr 1 2020 00:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47282 * 2 1 4 4 C 1.46757 * 124.35112 * 94.88669 * 3 2 1 5 5 C 1.54473 * 105.47791 * 162.98449 * 4 3 2 6 6 C 1.54638 * 101.76194 * 25.41092 * 5 4 3 7 7 H 1.08999 * 110.48809 * 216.39025 * 6 5 4 8 8 N 1.46905 * 110.48392 * 93.88457 * 6 5 4 9 9 C 1.48188 * 111.07403 * 327.12138 * 8 6 5 10 10 C 1.53930 * 86.22573 * 137.46260 * 9 8 6 11 11 C 1.47968 * 111.00027 * 66.40950 * 8 6 5 12 12 H 1.09005 * 113.75539 * 336.84725 * 11 8 6 13 13 C 1.52996 * 113.75391 * 108.10129 * 11 8 6 14 14 N 1.46503 * 109.47197 * 280.76948 * 13 11 8 15 15 C 1.34772 * 120.00280 * 184.89834 * 14 13 11 16 16 O 1.21281 * 119.99820 * 4.97855 * 15 14 13 17 17 C 1.50697 * 120.00305 * 184.96974 * 15 14 13 18 18 S 1.81006 * 109.47310 * 174.90488 * 17 15 14 19 19 C 1.76195 * 100.00056 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99926 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99767 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47018 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.46751 * 299.99920 * 23 21 19 26 26 H 1.48501 * 109.46771 * 59.99816 * 23 21 19 27 27 C 1.34416 * 124.34477 * 274.88315 * 3 2 1 28 28 O 1.21279 * 124.94901 * 0.44961 * 27 3 2 29 29 H 1.09004 * 109.46880 * 304.99822 * 1 2 3 30 30 H 1.08998 * 109.46824 * 64.99401 * 1 2 3 31 31 H 1.08996 * 109.47241 * 184.99968 * 1 2 3 32 32 H 1.09005 * 109.47006 * 239.99782 * 2 1 3 33 33 H 1.08995 * 109.47259 * 120.00016 * 2 1 3 34 34 H 1.09001 * 110.24821 * 43.98048 * 4 3 2 35 35 H 1.09008 * 110.31549 * 282.02399 * 4 3 2 36 36 H 1.09003 * 110.96968 * 267.29845 * 5 4 3 37 37 H 1.08998 * 111.00509 * 143.54450 * 5 4 3 38 38 H 1.09008 * 113.65761 * 23.13901 * 9 8 6 39 39 H 1.08996 * 113.92438 * 251.82208 * 9 8 6 40 40 H 1.09004 * 113.73540 * 222.01831 * 10 9 8 41 41 H 1.08998 * 113.83388 * 90.73804 * 10 9 8 42 42 H 1.09001 * 109.46714 * 160.77691 * 13 11 8 43 43 H 1.08994 * 109.47511 * 40.77343 * 13 11 8 44 44 H 0.97001 * 119.99799 * 4.90569 * 14 13 11 45 45 H 1.09002 * 109.46658 * 54.90898 * 17 15 14 46 46 H 1.08999 * 109.47590 * 294.90722 * 17 15 14 47 47 H 0.96995 * 119.99957 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3918 2.1276 1.2072 5 6 3.2332 3.3234 0.7089 6 6 2.7103 3.4963 -0.7361 7 1 3.5217 3.7873 -1.4032 8 7 1.6310 4.4921 -0.7766 9 6 0.8349 4.4661 0.4730 10 6 0.8681 6.0036 0.4060 11 6 2.1411 5.8407 -0.4441 12 1 3.0612 5.8304 0.1402 13 6 2.2065 6.7879 -1.6439 14 7 3.4008 6.4886 -2.4379 15 6 3.7201 7.2636 -3.4932 16 8 3.0716 8.2603 -3.7318 17 6 4.8830 6.8919 -4.3766 18 16 4.9636 8.0324 -5.7798 19 6 6.3697 7.3842 -6.6207 20 1 6.8898 6.5262 -6.2210 21 6 6.8090 7.9763 -7.7967 22 7 6.1748 9.0218 -8.2840 23 14 8.2994 7.2887 -8.6886 24 1 8.5607 8.0933 -9.9091 25 1 9.4827 7.3478 -7.7934 26 1 8.0391 5.8780 -9.0726 27 6 2.1821 2.1277 -1.1058 28 8 1.9408 1.7582 -2.2354 29 1 -0.3633 0.5894 0.8419 30 1 -0.3633 0.4344 -0.9313 31 1 -0.3633 -1.0237 0.0896 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9857 1.4990 1.8708 35 1 1.4999 2.4830 1.7234 36 1 4.2959 3.0811 0.7127 37 1 3.0361 4.2149 1.3043 38 1 1.3729 4.0520 1.3259 39 1 -0.1623 4.0428 0.3531 40 1 1.0428 6.4811 1.3702 41 1 0.0300 6.4390 -0.1381 42 1 2.2536 7.8182 -1.2912 43 1 1.3176 6.6552 -2.2605 44 1 3.9616 5.7325 -2.2041 45 1 4.7501 5.8739 -4.7430 46 1 5.8086 6.9541 -3.8043 47 1 5.4007 9.3786 -7.8211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:32 Heat of formation + Delta-G solvation = -21.160922 kcal Electronic energy + Delta-G solvation = -27661.299341 eV Core-core repulsion = 23778.913342 eV Total energy + Delta-G solvation = -3882.386000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00302 -39.66844 -38.86652 -36.70886 -34.61672 -33.92950 -32.48415 -30.67717 -30.07954 -29.14965 -27.74863 -26.12423 -24.81420 -24.14933 -23.35746 -22.30185 -20.56692 -19.75864 -19.54677 -18.30220 -18.02364 -17.14356 -16.62746 -16.29945 -16.05845 -15.68547 -15.10378 -15.00291 -14.77775 -14.36842 -14.14700 -13.99672 -13.90137 -13.80006 -13.41033 -13.27315 -13.17686 -12.83737 -12.55163 -12.38588 -12.36125 -12.23112 -12.03265 -11.81743 -11.77240 -11.64453 -11.49201 -11.34413 -11.21788 -10.88447 -10.14199 -10.13588 -9.54045 -9.46877 -9.28567 -9.05219 -8.98422 -8.87972 -8.17856 -6.62116 -6.58144 -3.95332 2.16751 2.51290 2.91748 3.09292 3.32777 3.38796 3.41300 3.58990 3.64211 3.77633 3.86224 4.07183 4.19882 4.25703 4.29188 4.41233 4.55280 4.64964 4.68479 4.74274 4.78491 4.89975 4.91915 4.95553 5.10156 5.14112 5.16875 5.23009 5.26371 5.27433 5.37829 5.43515 5.48034 5.53025 5.65367 5.73822 5.80527 5.83484 5.90462 6.07172 6.11809 6.44592 6.59115 6.70854 7.65184 7.86102 7.96160 8.54269 8.56590 9.31395 10.85886 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.002351 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.449763 B =11905.411086 C =13156.094927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.621 5.621 4 C 0.100 3.900 5 C -0.171 4.171 6 C 0.017 3.983 7 H 0.115 0.885 8 N -0.447 5.447 9 C -0.020 4.020 10 C -0.133 4.133 11 C 0.019 3.981 12 H 0.091 0.909 13 C 0.140 3.860 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.131 4.131 18 S -0.115 6.115 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.533 3.467 28 O -0.509 6.509 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.394 0.606 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 -16.678 28.836 34.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.357 5.357 4 C -0.023 4.023 5 C -0.210 4.210 6 C -0.096 4.096 7 H 0.133 0.867 8 N -0.171 5.171 9 C -0.148 4.148 10 C -0.171 4.171 11 C -0.090 4.090 12 H 0.109 0.891 13 C 0.016 3.984 14 N -0.389 5.389 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.282 4.282 18 S 0.111 5.889 19 C -0.755 4.755 20 H 0.083 0.917 21 C -0.176 4.176 22 N -0.519 5.519 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.211 1.211 27 C 0.318 3.682 28 O -0.381 6.381 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.227 0.773 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.229 -15.262 25.766 31.646 hybrid contribution 0.754 -1.956 2.654 3.382 sum -9.475 -17.218 28.420 34.553 Atomic orbital electron populations 1.22156 0.95618 1.02300 1.02739 1.21345 0.94552 0.80818 1.03068 1.48286 1.66193 1.13846 1.07423 1.22236 0.98844 0.93384 0.87849 1.23328 1.01462 0.99179 0.97030 1.22963 0.96400 0.93131 0.97060 0.86745 1.68821 1.14177 1.00458 1.33633 1.24450 1.00352 0.97004 0.92990 1.23308 0.97721 0.96001 1.00117 1.23850 0.98560 0.90244 0.96370 0.89116 1.21204 0.88851 0.97584 0.90756 1.45895 1.28421 1.33067 1.31555 1.20245 0.85109 0.82684 0.80151 1.90698 1.52485 1.25506 1.70570 1.23318 0.98509 1.05384 1.01027 1.84796 1.41544 1.40335 1.22249 1.23701 1.16102 1.21040 1.14629 0.91655 1.26054 1.02498 0.94716 0.94305 1.70795 1.19546 1.21131 1.40388 0.83332 0.73939 0.75613 0.76108 1.20286 1.21171 1.21134 1.20455 0.77019 0.86362 0.84316 1.90755 1.50052 1.75948 1.21345 0.92489 0.91959 0.91386 0.90122 0.90297 0.90201 0.90624 0.88872 0.88355 0.89115 0.89125 0.90167 0.88378 0.90467 0.90673 0.77270 0.89032 0.89014 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.12 0.79 6.61 -4.04 -0.03 0.76 16 3 N -0.62 -4.69 2.93 -172.41 -0.51 -5.20 16 4 C 0.10 0.41 6.56 -3.13 -0.02 0.39 16 5 C -0.17 -0.74 5.74 -25.10 -0.14 -0.89 16 6 C 0.02 0.14 3.17 -67.72 -0.21 -0.07 16 7 H 0.11 1.04 7.20 -51.93 -0.37 0.67 16 8 N -0.45 -3.96 6.03 -221.74 -1.34 -5.30 16 9 C -0.02 -0.12 6.73 -2.64 -0.02 -0.13 16 10 C -0.13 -0.76 7.86 -25.79 -0.20 -0.97 16 11 C 0.02 0.14 3.04 -66.65 -0.20 -0.06 16 12 H 0.09 0.53 6.73 -51.93 -0.35 0.18 16 13 C 0.14 1.63 5.73 -4.04 -0.02 1.61 16 14 N -0.74 -10.14 5.55 -60.30 -0.33 -10.47 16 15 C 0.53 10.26 7.84 -10.99 -0.09 10.18 16 16 O -0.52 -12.01 15.86 5.56 0.09 -11.92 16 17 C -0.13 -2.77 6.16 36.00 0.22 -2.54 16 18 S -0.12 -3.21 19.61 -107.50 -2.11 -5.31 16 19 C -0.61 -17.94 9.50 30.94 0.29 -17.64 16 20 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 21 C 0.03 1.03 5.49 -17.43 -0.10 0.94 16 22 N -0.88 -28.07 13.67 55.49 0.76 -27.31 16 23 Si 1.08 25.50 29.92 -169.99 -5.09 20.42 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.53 6.00 7.51 -10.86 -0.08 5.92 16 28 O -0.51 -8.29 17.67 5.56 0.10 -8.19 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 33 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.23 6.15 -51.92 -0.32 -0.09 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.28 5.31 -51.93 -0.28 0.01 16 38 H 0.09 0.33 3.32 -51.92 -0.17 0.16 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.39 4.42 7.54 -40.82 -0.31 4.11 16 45 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 46 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 47 H 0.28 9.00 7.12 -40.82 -0.29 8.71 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -39.59 389.67 -9.98 -49.57 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.20 Total: 1.04 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.22 Total: -3.19 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -1.42 Total: -48.28 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.19 Total: -20.12 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.09 Total: 20.42 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.11 Total: -5.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.59 -9.98 -49.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.405 kcal (2) G-P(sol) polarization free energy of solvation -39.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds