Wall clock time and date at job start Wed Apr 1 2020 00:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47282 * 2 1 4 4 C 1.46757 * 124.35112 * 94.88669 * 3 2 1 5 5 C 1.54473 * 105.47791 * 162.98449 * 4 3 2 6 6 C 1.54638 * 101.76194 * 25.41092 * 5 4 3 7 7 H 1.08999 * 110.48809 * 216.39025 * 6 5 4 8 8 N 1.46905 * 110.48392 * 93.88457 * 6 5 4 9 9 C 1.48188 * 111.07403 * 327.12138 * 8 6 5 10 10 C 1.53930 * 86.22573 * 137.46260 * 9 8 6 11 11 C 1.47968 * 111.00027 * 66.40950 * 8 6 5 12 12 H 1.09005 * 113.75539 * 336.84725 * 11 8 6 13 13 C 1.52996 * 113.75391 * 108.10129 * 11 8 6 14 14 N 1.46503 * 109.47197 * 280.76948 * 13 11 8 15 15 C 1.34772 * 120.00280 * 184.89834 * 14 13 11 16 16 O 1.21281 * 119.99820 * 4.97855 * 15 14 13 17 17 C 1.50697 * 120.00305 * 184.96974 * 15 14 13 18 18 S 1.81006 * 109.47310 * 174.90488 * 17 15 14 19 19 C 1.76195 * 100.00056 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99926 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99767 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47018 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.46751 * 299.99920 * 23 21 19 26 26 H 1.48501 * 109.46771 * 59.99816 * 23 21 19 27 27 C 1.34416 * 124.34477 * 274.88315 * 3 2 1 28 28 O 1.21279 * 124.94901 * 0.44961 * 27 3 2 29 29 H 1.09004 * 109.46880 * 304.99822 * 1 2 3 30 30 H 1.08998 * 109.46824 * 64.99401 * 1 2 3 31 31 H 1.08996 * 109.47241 * 184.99968 * 1 2 3 32 32 H 1.09005 * 109.47006 * 239.99782 * 2 1 3 33 33 H 1.08995 * 109.47259 * 120.00016 * 2 1 3 34 34 H 1.09001 * 110.24821 * 43.98048 * 4 3 2 35 35 H 1.09008 * 110.31549 * 282.02399 * 4 3 2 36 36 H 1.09003 * 110.96968 * 267.29845 * 5 4 3 37 37 H 1.08998 * 111.00509 * 143.54450 * 5 4 3 38 38 H 1.09008 * 113.65761 * 23.13901 * 9 8 6 39 39 H 1.08996 * 113.92438 * 251.82208 * 9 8 6 40 40 H 1.09004 * 113.73540 * 222.01831 * 10 9 8 41 41 H 1.08998 * 113.83388 * 90.73804 * 10 9 8 42 42 H 1.09001 * 109.46714 * 160.77691 * 13 11 8 43 43 H 1.08994 * 109.47511 * 40.77343 * 13 11 8 44 44 H 0.97001 * 119.99799 * 4.90569 * 14 13 11 45 45 H 1.09002 * 109.46658 * 54.90898 * 17 15 14 46 46 H 1.08999 * 109.47590 * 294.90722 * 17 15 14 47 47 H 0.96995 * 119.99957 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3918 2.1276 1.2072 5 6 3.2332 3.3234 0.7089 6 6 2.7103 3.4963 -0.7361 7 1 3.5217 3.7873 -1.4032 8 7 1.6310 4.4921 -0.7766 9 6 0.8349 4.4661 0.4730 10 6 0.8681 6.0036 0.4060 11 6 2.1411 5.8407 -0.4441 12 1 3.0612 5.8304 0.1402 13 6 2.2065 6.7879 -1.6439 14 7 3.4008 6.4886 -2.4379 15 6 3.7201 7.2636 -3.4932 16 8 3.0716 8.2603 -3.7318 17 6 4.8830 6.8919 -4.3766 18 16 4.9636 8.0324 -5.7798 19 6 6.3697 7.3842 -6.6207 20 1 6.8898 6.5262 -6.2210 21 6 6.8090 7.9763 -7.7967 22 7 6.1748 9.0218 -8.2840 23 14 8.2994 7.2887 -8.6886 24 1 8.5607 8.0933 -9.9091 25 1 9.4827 7.3478 -7.7934 26 1 8.0391 5.8780 -9.0726 27 6 2.1821 2.1277 -1.1058 28 8 1.9408 1.7582 -2.2354 29 1 -0.3633 0.5894 0.8419 30 1 -0.3633 0.4344 -0.9313 31 1 -0.3633 -1.0237 0.0896 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9857 1.4990 1.8708 35 1 1.4999 2.4830 1.7234 36 1 4.2959 3.0811 0.7127 37 1 3.0361 4.2149 1.3043 38 1 1.3729 4.0520 1.3259 39 1 -0.1623 4.0428 0.3531 40 1 1.0428 6.4811 1.3702 41 1 0.0300 6.4390 -0.1381 42 1 2.2536 7.8182 -1.2912 43 1 1.3176 6.6552 -2.2605 44 1 3.9616 5.7325 -2.2041 45 1 4.7501 5.8739 -4.7430 46 1 5.8086 6.9541 -3.8043 47 1 5.4007 9.3786 -7.8211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:31 Heat of formation + Delta-G solvation = -53.355807 kcal Electronic energy + Delta-G solvation = -27662.695416 eV Core-core repulsion = 23778.913342 eV Total energy + Delta-G solvation = -3883.782075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59507 -40.75589 -39.98883 -37.49578 -35.78208 -34.76063 -34.59155 -31.73000 -31.04831 -29.65807 -28.83966 -27.07261 -26.68460 -24.73931 -24.06881 -22.78780 -21.94725 -20.62352 -20.33082 -20.11556 -18.57196 -18.05783 -17.75897 -17.59852 -16.91461 -16.68170 -16.37149 -15.93226 -15.76486 -15.67458 -15.46328 -14.95965 -14.87412 -14.63601 -14.52252 -14.45184 -14.19786 -13.92784 -13.76243 -13.71770 -13.24332 -13.02386 -12.88392 -12.74698 -12.69351 -12.45559 -12.17813 -12.03767 -11.96253 -11.91088 -11.82371 -11.56524 -11.11130 -11.04901 -10.92869 -10.35481 -10.19646 -9.88094 -9.59882 -8.94223 -8.88806 -6.29237 1.16285 1.39515 1.48949 1.52258 1.59723 1.80097 1.96769 2.15745 2.33618 2.80195 3.00774 3.11965 3.23221 3.38171 3.55169 3.72457 3.79779 3.85965 4.00565 4.04543 4.07595 4.12156 4.18696 4.24021 4.26706 4.33626 4.39887 4.44625 4.61156 4.64007 4.72322 4.77083 4.81216 4.83548 4.90501 5.00616 5.03060 5.20493 5.20999 5.26088 5.35557 5.58641 5.62187 5.90203 6.10245 6.13338 6.36934 7.04715 7.11156 7.11766 8.49265 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.002351 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.449763 B =11905.411086 C =13156.094927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.614 5.614 4 C 0.093 3.907 5 C -0.159 4.159 6 C 0.014 3.986 7 H 0.101 0.899 8 N -0.485 5.485 9 C -0.013 4.013 10 C -0.124 4.124 11 C 0.028 3.972 12 H 0.121 0.879 13 C 0.137 3.863 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.564 6.564 17 C -0.110 4.110 18 S -0.194 6.194 19 C -0.614 4.614 20 H 0.074 0.926 21 C -0.020 4.020 22 N -0.912 5.912 23 Si 1.137 2.863 24 H -0.279 1.279 25 H -0.261 1.261 26 H -0.266 1.266 27 C 0.517 3.483 28 O -0.579 6.579 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.410 0.590 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -18.482 32.996 38.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.004 4.004 3 N -0.348 5.348 4 C -0.028 4.028 5 C -0.197 4.197 6 C -0.098 4.098 7 H 0.119 0.881 8 N -0.209 5.209 9 C -0.140 4.140 10 C -0.162 4.162 11 C -0.081 4.081 12 H 0.138 0.862 13 C 0.014 3.986 14 N -0.362 5.362 15 C 0.318 3.682 16 O -0.443 6.443 17 C -0.262 4.262 18 S 0.033 5.967 19 C -0.762 4.762 20 H 0.092 0.908 21 C -0.223 4.223 22 N -0.547 5.547 23 Si 0.954 3.046 24 H -0.204 1.204 25 H -0.185 1.185 26 H -0.191 1.191 27 C 0.304 3.696 28 O -0.458 6.458 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.246 0.754 45 H 0.121 0.879 46 H 0.133 0.867 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.869 -17.115 30.052 35.703 hybrid contribution 0.213 -1.499 1.493 2.126 sum -8.655 -18.614 31.544 37.635 Atomic orbital electron populations 1.22097 0.95522 1.03281 1.01251 1.21505 0.94645 0.80559 1.03717 1.48463 1.64457 1.14076 1.07792 1.22582 1.00101 0.93490 0.86608 1.23366 1.02107 1.00287 0.93985 1.22937 0.95872 0.91360 0.99637 0.88086 1.68778 1.15130 1.00951 1.36063 1.24530 0.99774 0.97100 0.92631 1.23280 0.95951 0.96125 1.00832 1.23858 1.00850 0.88743 0.94677 0.86169 1.21386 0.86503 0.99162 0.91589 1.45693 1.28777 1.32056 1.29653 1.19974 0.84355 0.82740 0.81092 1.90685 1.53853 1.27688 1.72053 1.23228 1.00698 1.03578 0.98697 1.85018 1.41855 1.43626 1.26195 1.24031 1.16144 1.21099 1.14924 0.90790 1.27874 1.04948 0.94111 0.95355 1.70915 1.19931 1.22871 1.40999 0.82718 0.70902 0.75705 0.75230 1.20361 1.18530 1.19070 1.21109 0.76512 0.87852 0.84121 1.90703 1.53367 1.77536 1.24169 0.91145 0.95617 0.89730 0.92482 0.86566 0.87334 0.88752 0.87607 0.85842 0.86099 0.90208 0.87036 0.89815 0.90393 0.93199 0.75401 0.87913 0.86727 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.24 71.98 0.74 -1.15 16 2 C 0.12 1.34 6.61 86.38 0.57 1.91 16 3 N -0.61 -8.16 2.93 -817.99 -2.40 -10.56 16 4 C 0.09 0.35 6.56 86.83 0.57 0.92 16 5 C -0.16 -0.68 5.74 31.65 0.18 -0.49 16 6 C 0.01 0.22 3.17 44.91 0.14 0.36 16 7 H 0.10 1.73 7.20 -2.39 -0.02 1.72 16 8 N -0.48 -7.85 6.03 -855.46 -5.16 -13.01 16 9 C -0.01 -0.11 6.73 86.36 0.58 0.47 16 10 C -0.12 -1.04 7.86 31.24 0.25 -0.80 16 11 C 0.03 0.35 3.04 45.02 0.14 0.48 16 12 H 0.12 0.84 6.73 -2.38 -0.02 0.82 16 13 C 0.14 3.09 5.73 86.38 0.50 3.58 16 14 N -0.71 -18.92 5.55 -463.08 -2.57 -21.49 16 15 C 0.53 20.65 7.84 87.66 0.69 21.34 16 16 O -0.56 -26.97 15.86 -3.03 -0.05 -27.02 16 17 C -0.11 -4.64 6.16 71.24 0.44 -4.20 16 18 S -0.19 -11.08 19.61 -56.49 -1.11 -12.19 16 19 C -0.61 -36.62 9.50 67.95 0.65 -35.97 16 20 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 21 C -0.02 -1.18 5.49 84.86 0.47 -0.72 16 22 N -0.91 -59.35 13.67 21.65 0.30 -59.05 16 23 Si 1.14 50.65 29.92 68.60 2.05 52.71 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 C 0.52 11.65 7.51 87.90 0.66 12.31 16 28 O -0.58 -20.24 17.67 -3.03 -0.05 -20.30 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.93 8.04 -2.38 -0.02 0.91 16 33 H 0.12 0.47 8.13 -2.39 -0.02 0.45 16 34 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.09 0.06 6.15 -2.38 -0.01 0.04 16 36 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.12 -0.06 5.31 -2.39 -0.01 -0.07 16 38 H 0.12 0.27 3.32 -2.38 -0.01 0.26 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.41 8.48 7.54 -92.71 -0.70 7.78 16 45 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 46 H 0.11 4.28 8.14 -2.40 -0.02 4.26 16 47 H 0.26 17.62 7.12 -92.71 -0.66 16.96 16 Total: -1.00 -94.08 389.67 -2.04 -96.12 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.40 Total: 16.76 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.56 Total: -1.96 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -9.83 Total: -104.11 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.10 Total: -47.32 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.71 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -1.11 Total: -12.19 kcal Total: -94.08 -2.04 -96.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.762 kcal (2) G-P(sol) polarization free energy of solvation -94.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds