Wall clock time and date at job start Wed Apr 1 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46888 * 2 1 4 4 C 1.46759 * 124.35388 * 269.99817 * 3 2 1 5 5 C 1.54479 * 105.47766 * 196.99689 * 4 3 2 6 6 C 1.54625 * 101.76235 * 334.58516 * 5 4 3 7 7 H 1.09006 * 110.59850 * 143.52918 * 6 5 4 8 8 N 1.46900 * 110.48609 * 266.11374 * 6 5 4 9 9 C 1.47473 * 111.00259 * 314.29082 * 8 6 5 10 10 C 1.53516 * 87.93299 * 221.29401 * 9 8 6 11 11 C 1.47479 * 111.00294 * 218.31709 * 8 6 5 12 12 H 1.09001 * 113.47399 * 23.93710 * 11 8 6 13 13 C 1.53007 * 113.47595 * 253.47270 * 11 8 6 14 14 N 1.46503 * 109.47145 * 70.34864 * 13 11 8 15 15 C 1.34775 * 119.99870 * 187.65738 * 14 13 11 16 16 O 1.21274 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99541 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.46724 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99872 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99693 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99885 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99938 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00282 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47526 * 89.99614 * 23 21 19 25 25 H 1.48499 * 109.47465 * 210.00019 * 23 21 19 26 26 H 1.48510 * 109.46910 * 329.99858 * 23 21 19 27 27 C 1.34421 * 124.34889 * 89.97821 * 3 2 1 28 28 O 1.21281 * 124.94274 * 359.64490 * 27 3 2 29 29 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47188 * 300.00151 * 1 2 3 31 31 H 1.09002 * 109.46810 * 59.99780 * 1 2 3 32 32 H 1.09003 * 109.46998 * 240.00610 * 2 1 3 33 33 H 1.08995 * 109.47194 * 120.00179 * 2 1 3 34 34 H 1.09009 * 110.24827 * 316.00018 * 4 3 2 35 35 H 1.08995 * 110.24710 * 77.90782 * 4 3 2 36 36 H 1.08995 * 110.97183 * 216.46260 * 5 4 3 37 37 H 1.09009 * 110.96668 * 92.70489 * 5 4 3 38 38 H 1.09005 * 113.47713 * 336.06159 * 9 8 6 39 39 H 1.08999 * 113.47780 * 106.52794 * 9 8 6 40 40 H 1.09002 * 114.17103 * 139.67316 * 10 9 8 41 41 H 1.09001 * 114.16878 * 272.18207 * 10 9 8 42 42 H 1.08993 * 109.47087 * 190.34888 * 13 11 8 43 43 H 1.08999 * 109.47053 * 310.35515 * 13 11 8 44 44 H 0.97001 * 119.99406 * 7.66817 * 14 13 11 45 45 H 1.08997 * 109.47480 * 300.00524 * 17 15 14 46 46 H 1.08998 * 109.46775 * 60.00799 * 17 15 14 47 47 H 0.96993 * 119.99998 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 -1.2116 5 6 3.1739 3.3445 -0.7485 6 6 2.7686 3.4757 0.7379 7 1 3.6302 3.7475 1.3478 8 7 1.6969 4.4683 0.8929 9 6 1.9923 5.6899 0.1212 10 6 1.4700 6.5029 1.3141 11 6 1.8872 5.2645 2.1196 12 1 2.9221 5.2965 2.4603 13 6 0.9061 4.9056 3.2375 14 7 1.2343 3.5802 3.7685 15 6 0.4119 2.9875 4.6565 16 8 -0.6001 3.5510 5.0158 17 6 0.7493 1.6238 5.2022 18 16 -0.5390 1.1024 6.3618 19 6 0.0922 -0.4740 6.8319 20 1 1.0206 -0.8313 6.4111 21 6 -0.6041 -1.2571 7.7420 22 7 -0.1327 -2.4351 8.0928 23 14 -2.2108 -0.6402 8.4680 24 1 -3.3413 -1.0732 7.6079 25 1 -2.3845 -1.1995 9.8326 26 1 -2.1839 0.8429 8.5407 27 6 2.2707 2.0964 1.1098 28 8 2.1215 1.6943 2.2442 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.8327 1.5533 -1.9382 35 1 1.3636 2.5292 -1.6439 36 1 2.9300 4.2519 -1.3009 37 1 4.2328 3.1040 -0.8444 38 1 3.0552 5.8354 -0.0715 39 1 1.3824 5.7948 -0.7761 40 1 2.0538 7.3965 1.5350 41 1 0.3955 6.6849 1.2940 42 1 0.9782 5.6447 4.0353 43 1 -0.1091 4.8969 2.8409 44 1 2.0437 3.1294 3.4809 45 1 0.8101 0.9089 4.3817 46 1 1.7081 1.6664 5.7190 47 1 -0.6192 -2.9822 8.7290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:35 Heat of formation + Delta-G solvation = -20.692886 kcal Electronic energy + Delta-G solvation = -28710.748226 eV Core-core repulsion = 24828.382522 eV Total energy + Delta-G solvation = -3882.365704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59884 -39.67110 -38.68430 -36.66708 -34.34241 -33.78315 -32.30035 -30.56674 -29.78559 -28.85255 -27.47795 -26.09194 -25.46329 -23.94028 -23.28121 -21.68474 -20.44701 -19.75689 -19.57041 -17.74777 -17.60908 -16.89796 -16.48076 -15.99295 -15.52805 -15.45402 -15.24963 -14.84977 -14.65466 -14.48004 -14.20527 -13.90422 -13.67274 -13.58780 -13.25341 -13.16238 -12.84651 -12.68985 -12.57887 -12.36259 -12.31926 -12.02248 -11.80634 -11.67469 -11.47394 -11.34629 -11.16947 -11.12082 -10.97409 -10.89077 -10.39489 -9.99569 -9.72074 -9.30554 -9.17330 -8.93157 -8.87103 -8.55080 -8.30180 -6.73041 -6.15792 -3.84557 2.30676 2.75897 3.00056 3.33601 3.42140 3.44870 3.60441 3.62203 3.73109 3.92283 3.98158 4.11124 4.38263 4.44997 4.46882 4.54791 4.80687 4.82405 4.86306 4.91917 4.94655 4.99071 5.07527 5.12936 5.17423 5.23198 5.23319 5.27721 5.36815 5.44694 5.51153 5.58845 5.62166 5.70342 5.77492 5.90115 5.99006 6.12192 6.15076 6.34876 6.44575 6.52734 6.87792 6.98151 7.92283 8.07943 8.17724 8.56913 8.89630 9.31163 10.93776 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.003355 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.537240 B = 8344.928147 C = 9800.717761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.613 5.613 4 C 0.109 3.891 5 C -0.137 4.137 6 C 0.009 3.991 7 H 0.088 0.912 8 N -0.445 5.445 9 C -0.001 4.001 10 C -0.134 4.134 11 C 0.017 3.983 12 H 0.087 0.913 13 C 0.137 3.863 14 N -0.726 5.726 15 C 0.536 3.464 16 O -0.536 6.536 17 C -0.112 4.112 18 S -0.151 6.151 19 C -0.514 4.514 20 H 0.087 0.913 21 C 0.094 3.906 22 N -0.885 5.885 23 Si 0.857 3.143 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.235 1.235 27 C 0.534 3.466 28 O -0.508 6.508 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.406 0.594 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.190 16.022 -25.690 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.002 3.998 3 N -0.347 5.347 4 C -0.014 4.014 5 C -0.175 4.175 6 C -0.104 4.104 7 H 0.106 0.894 8 N -0.170 5.170 9 C -0.130 4.130 10 C -0.173 4.173 11 C -0.093 4.093 12 H 0.104 0.896 13 C 0.012 3.988 14 N -0.386 5.386 15 C 0.322 3.678 16 O -0.412 6.412 17 C -0.263 4.263 18 S 0.075 5.925 19 C -0.662 4.662 20 H 0.105 0.895 21 C -0.114 4.114 22 N -0.522 5.522 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.159 1.159 27 C 0.320 3.680 28 O -0.382 6.382 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.247 0.753 45 H 0.119 0.881 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.817 16.039 -24.518 30.323 hybrid contribution 1.745 -0.680 -0.203 1.884 sum 9.562 15.358 -24.720 30.633 Atomic orbital electron populations 1.22139 0.95351 1.02592 1.02656 1.21389 0.94810 0.80456 1.03171 1.48178 1.65789 1.13928 1.06852 1.21978 0.99432 0.92377 0.87605 1.22893 1.00562 0.99781 0.94223 1.23104 0.95229 0.93863 0.98158 0.89399 1.69022 1.37573 1.05160 1.05220 1.23775 1.00595 0.90027 0.98567 1.23143 1.03129 0.96077 0.94904 1.23871 0.99756 0.93511 0.92122 0.89566 1.21169 0.98448 0.85369 0.93801 1.46211 1.27905 1.18897 1.45631 1.20150 0.82792 0.86786 0.78105 1.90651 1.26005 1.65386 1.59174 1.23183 1.03890 0.96239 1.02987 1.84643 1.31900 1.22983 1.52925 1.22354 1.12352 1.00911 1.30550 0.89516 1.24710 0.97692 0.93973 0.95024 1.69953 1.39315 1.10104 1.32841 0.86726 0.83835 0.82174 0.79063 1.19326 1.20121 1.15891 1.20407 0.76703 0.86330 0.84604 1.90597 1.52597 1.74258 1.20735 0.91266 0.91671 0.92767 0.90584 0.89580 0.90495 0.90945 0.88407 0.89423 0.90739 0.89093 0.89891 0.88178 0.91576 0.90800 0.75288 0.88120 0.89210 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.12 1.22 6.65 -4.04 -0.03 1.19 16 3 N -0.61 -6.02 2.93 -172.42 -0.51 -6.53 16 4 C 0.11 0.66 7.35 -3.12 -0.02 0.64 16 5 C -0.14 -0.66 6.42 -25.10 -0.16 -0.82 16 6 C 0.01 0.07 2.66 -67.73 -0.18 -0.11 16 7 H 0.09 0.67 7.27 -51.93 -0.38 0.30 16 8 N -0.45 -3.85 6.07 -228.54 -1.39 -5.23 16 9 C 0.00 -0.01 5.89 -7.56 -0.04 -0.05 16 10 C -0.13 -0.80 8.01 -26.20 -0.21 -1.01 16 11 C 0.02 0.15 3.12 -71.44 -0.22 -0.07 16 12 H 0.09 0.66 7.40 -51.93 -0.38 0.28 16 13 C 0.14 1.81 5.72 -4.04 -0.02 1.78 16 14 N -0.73 -12.03 4.88 -60.29 -0.29 -12.32 16 15 C 0.54 11.49 7.85 -10.98 -0.09 11.40 16 16 O -0.54 -13.15 15.83 5.56 0.09 -13.06 16 17 C -0.11 -2.62 6.16 36.01 0.22 -2.40 16 18 S -0.15 -4.22 18.55 -107.50 -1.99 -6.21 16 19 C -0.51 -15.91 10.04 30.94 0.31 -15.60 16 20 H 0.09 2.82 8.03 -52.49 -0.42 2.40 16 21 C 0.09 2.90 5.50 -17.43 -0.10 2.80 16 22 N -0.88 -27.96 13.97 55.49 0.78 -27.18 16 23 Si 0.86 23.01 27.74 -169.99 -4.71 18.30 16 24 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.24 -6.33 6.74 56.52 0.38 -5.94 16 27 C 0.53 6.47 7.60 -10.86 -0.08 6.39 16 28 O -0.51 -8.21 13.56 5.56 0.08 -8.14 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.32 5.96 -51.93 -0.31 0.01 16 37 H 0.09 0.32 8.14 -51.92 -0.42 -0.11 16 38 H 0.07 0.26 7.29 -51.93 -0.38 -0.12 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 44 H 0.41 6.37 5.17 -40.82 -0.21 6.16 16 45 H 0.10 2.37 7.75 -51.92 -0.40 1.96 16 46 H 0.09 2.00 8.14 -51.92 -0.42 1.57 16 47 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -38.51 388.55 -9.89 -48.40 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.54 Total: 3.43 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.24 Total: 2.70 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -1.41 Total: -51.27 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.16 Total: -21.20 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.30 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -1.99 Total: -6.21 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.51 -9.89 -48.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.708 kcal (2) G-P(sol) polarization free energy of solvation -38.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds