Wall clock time and date at job start Wed Apr 1 2020 00:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46888 * 2 1 4 4 C 1.46759 * 124.35388 * 269.99817 * 3 2 1 5 5 C 1.54479 * 105.47766 * 196.99689 * 4 3 2 6 6 C 1.54625 * 101.76235 * 334.58516 * 5 4 3 7 7 H 1.09006 * 110.59850 * 143.52918 * 6 5 4 8 8 N 1.46900 * 110.48609 * 266.11374 * 6 5 4 9 9 C 1.47473 * 111.00259 * 314.29082 * 8 6 5 10 10 C 1.53516 * 87.93299 * 221.29401 * 9 8 6 11 11 C 1.47479 * 111.00294 * 218.31709 * 8 6 5 12 12 H 1.09001 * 113.47399 * 23.93710 * 11 8 6 13 13 C 1.53007 * 113.47595 * 253.47270 * 11 8 6 14 14 N 1.46503 * 109.47145 * 70.34864 * 13 11 8 15 15 C 1.34775 * 119.99870 * 187.65738 * 14 13 11 16 16 O 1.21274 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99541 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.46724 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99872 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99693 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99885 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99938 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00282 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47526 * 89.99614 * 23 21 19 25 25 H 1.48499 * 109.47465 * 210.00019 * 23 21 19 26 26 H 1.48510 * 109.46910 * 329.99858 * 23 21 19 27 27 C 1.34421 * 124.34889 * 89.97821 * 3 2 1 28 28 O 1.21281 * 124.94274 * 359.64490 * 27 3 2 29 29 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47188 * 300.00151 * 1 2 3 31 31 H 1.09002 * 109.46810 * 59.99780 * 1 2 3 32 32 H 1.09003 * 109.46998 * 240.00610 * 2 1 3 33 33 H 1.08995 * 109.47194 * 120.00179 * 2 1 3 34 34 H 1.09009 * 110.24827 * 316.00018 * 4 3 2 35 35 H 1.08995 * 110.24710 * 77.90782 * 4 3 2 36 36 H 1.08995 * 110.97183 * 216.46260 * 5 4 3 37 37 H 1.09009 * 110.96668 * 92.70489 * 5 4 3 38 38 H 1.09005 * 113.47713 * 336.06159 * 9 8 6 39 39 H 1.08999 * 113.47780 * 106.52794 * 9 8 6 40 40 H 1.09002 * 114.17103 * 139.67316 * 10 9 8 41 41 H 1.09001 * 114.16878 * 272.18207 * 10 9 8 42 42 H 1.08993 * 109.47087 * 190.34888 * 13 11 8 43 43 H 1.08999 * 109.47053 * 310.35515 * 13 11 8 44 44 H 0.97001 * 119.99406 * 7.66817 * 14 13 11 45 45 H 1.08997 * 109.47480 * 300.00524 * 17 15 14 46 46 H 1.08998 * 109.46775 * 60.00799 * 17 15 14 47 47 H 0.96993 * 119.99998 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 -1.2116 5 6 3.1739 3.3445 -0.7485 6 6 2.7686 3.4757 0.7379 7 1 3.6302 3.7475 1.3478 8 7 1.6969 4.4683 0.8929 9 6 1.9923 5.6899 0.1212 10 6 1.4700 6.5029 1.3141 11 6 1.8872 5.2645 2.1196 12 1 2.9221 5.2965 2.4603 13 6 0.9061 4.9056 3.2375 14 7 1.2343 3.5802 3.7685 15 6 0.4119 2.9875 4.6565 16 8 -0.6001 3.5510 5.0158 17 6 0.7493 1.6238 5.2022 18 16 -0.5390 1.1024 6.3618 19 6 0.0922 -0.4740 6.8319 20 1 1.0206 -0.8313 6.4111 21 6 -0.6041 -1.2571 7.7420 22 7 -0.1327 -2.4351 8.0928 23 14 -2.2108 -0.6402 8.4680 24 1 -3.3413 -1.0732 7.6079 25 1 -2.3845 -1.1995 9.8326 26 1 -2.1839 0.8429 8.5407 27 6 2.2707 2.0964 1.1098 28 8 2.1215 1.6943 2.2442 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.8327 1.5533 -1.9382 35 1 1.3636 2.5292 -1.6439 36 1 2.9300 4.2519 -1.3009 37 1 4.2328 3.1040 -0.8444 38 1 3.0552 5.8354 -0.0715 39 1 1.3824 5.7948 -0.7761 40 1 2.0538 7.3965 1.5350 41 1 0.3955 6.6849 1.2940 42 1 0.9782 5.6447 4.0353 43 1 -0.1091 4.8969 2.8409 44 1 2.0437 3.1294 3.4809 45 1 0.8101 0.9089 4.3817 46 1 1.7081 1.6664 5.7190 47 1 -0.6192 -2.9822 8.7290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:34 Heat of formation + Delta-G solvation = -51.240017 kcal Electronic energy + Delta-G solvation = -28712.072849 eV Core-core repulsion = 24828.382522 eV Total energy + Delta-G solvation = -3883.690327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26514 -40.61595 -40.11820 -37.56349 -35.57343 -34.71820 -34.67766 -31.71056 -30.99991 -29.45288 -28.68280 -27.86083 -26.70480 -24.69791 -24.08680 -22.33654 -21.76293 -20.66926 -20.34643 -19.86192 -18.22570 -17.98463 -17.68301 -17.41210 -17.12554 -16.73129 -16.45817 -15.94855 -15.79716 -15.62106 -15.32043 -15.07300 -14.94099 -14.65024 -14.55291 -14.53195 -14.11917 -13.70578 -13.64050 -13.38071 -13.30670 -13.05663 -12.93723 -12.88769 -12.80208 -12.67553 -12.37400 -12.10988 -12.04255 -11.90847 -11.80702 -11.63545 -11.20292 -10.93655 -10.80112 -10.60137 -10.02440 -9.90414 -9.67703 -9.04080 -8.54765 -6.26505 0.95593 1.28534 1.44159 1.47555 1.53532 1.59308 2.05750 2.22740 2.33098 2.68439 2.82566 2.98537 3.20541 3.42230 3.56311 3.80545 3.91521 3.95203 4.02994 4.10124 4.12933 4.16995 4.21578 4.27342 4.41864 4.43766 4.45952 4.48053 4.58649 4.65896 4.75399 4.81126 4.83480 4.90171 4.92448 5.04808 5.07928 5.20150 5.23055 5.26943 5.49603 5.64561 5.67500 5.97340 6.06631 6.15821 6.54351 6.89259 7.11779 7.33035 8.58481 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.003355 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.537240 B = 8344.928147 C = 9800.717761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.614 5.614 4 C 0.102 3.898 5 C -0.122 4.122 6 C 0.012 3.988 7 H 0.095 0.905 8 N -0.473 5.473 9 C 0.010 3.990 10 C -0.124 4.124 11 C 0.016 3.984 12 H 0.103 0.897 13 C 0.132 3.868 14 N -0.703 5.703 15 C 0.535 3.465 16 O -0.572 6.572 17 C -0.098 4.098 18 S -0.168 6.168 19 C -0.532 4.532 20 H 0.053 0.947 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.918 3.082 24 H -0.261 1.261 25 H -0.252 1.252 26 H -0.238 1.238 27 C 0.512 3.488 28 O -0.566 6.566 29 H 0.075 0.925 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.412 0.588 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.133 18.366 -28.442 35.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.001 4.001 3 N -0.347 5.347 4 C -0.019 4.019 5 C -0.160 4.160 6 C -0.100 4.100 7 H 0.113 0.887 8 N -0.198 5.198 9 C -0.117 4.117 10 C -0.163 4.163 11 C -0.094 4.094 12 H 0.121 0.879 13 C 0.008 3.992 14 N -0.362 5.362 15 C 0.320 3.680 16 O -0.452 6.452 17 C -0.249 4.249 18 S 0.058 5.942 19 C -0.680 4.680 20 H 0.071 0.929 21 C -0.158 4.158 22 N -0.555 5.555 23 Si 0.739 3.261 24 H -0.185 1.185 25 H -0.176 1.176 26 H -0.162 1.162 27 C 0.300 3.700 28 O -0.444 6.444 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.255 0.745 45 H 0.111 0.889 46 H 0.116 0.884 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.812 18.398 -27.355 34.124 hybrid contribution 1.537 -1.437 0.512 2.166 sum 10.348 16.961 -26.843 33.396 Atomic orbital electron populations 1.22071 0.96257 1.02585 1.01115 1.21391 0.94006 0.81231 1.03482 1.48399 1.64503 1.13842 1.07931 1.22293 1.00316 0.92920 0.86410 1.22961 1.01333 1.00170 0.91512 1.23108 0.94988 0.91260 1.00674 0.88714 1.68967 1.38515 1.06614 1.05734 1.23865 1.02448 0.87270 0.98165 1.23132 1.03021 0.95822 0.94295 1.23947 0.99209 0.95312 0.90905 0.87943 1.21455 0.99023 0.83194 0.95555 1.46144 1.26813 1.19841 1.43359 1.19806 0.83060 0.86034 0.79050 1.90626 1.27567 1.66027 1.60957 1.23108 1.02508 0.97643 1.01593 1.84445 1.34131 1.21164 1.54440 1.22434 1.11624 1.02762 1.31154 0.92861 1.25600 1.01082 0.94049 0.95118 1.70023 1.40940 1.11114 1.33415 0.85823 0.79393 0.81448 0.79398 1.18537 1.17582 1.16176 1.21330 0.76259 0.88163 0.84287 1.90540 1.55175 1.75692 1.22982 0.90637 0.96201 0.91012 0.86864 0.92585 0.87869 0.90690 0.85934 0.87496 0.87958 0.87910 0.87460 0.89200 0.91123 0.92917 0.74491 0.88895 0.88421 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.90 16 2 C 0.12 2.40 6.65 86.38 0.57 2.98 16 3 N -0.61 -11.57 2.93 -818.00 -2.40 -13.97 16 4 C 0.10 0.91 7.35 86.83 0.64 1.55 16 5 C -0.12 -0.67 6.42 31.65 0.20 -0.47 16 6 C 0.01 0.17 2.66 44.91 0.12 0.29 16 7 H 0.10 1.20 7.27 -2.38 -0.02 1.19 16 8 N -0.47 -7.10 6.07 -876.98 -5.32 -12.42 16 9 C 0.01 0.06 5.89 83.57 0.49 0.55 16 10 C -0.12 -1.09 8.01 30.94 0.25 -0.84 16 11 C 0.02 0.25 3.12 42.18 0.13 0.38 16 12 H 0.10 1.28 7.40 -2.39 -0.02 1.26 16 13 C 0.13 3.46 5.72 86.38 0.49 3.95 16 14 N -0.70 -23.88 4.88 -463.06 -2.26 -26.14 16 15 C 0.54 23.83 7.85 87.66 0.69 24.51 16 16 O -0.57 -28.95 15.83 -3.01 -0.05 -29.00 16 17 C -0.10 -4.77 6.16 71.24 0.44 -4.33 16 18 S -0.17 -9.70 18.55 -56.49 -1.05 -10.75 16 19 C -0.53 -34.27 10.04 67.95 0.68 -33.59 16 20 H 0.05 3.67 8.03 -2.91 -0.02 3.64 16 21 C 0.05 2.94 5.50 84.86 0.47 3.41 16 22 N -0.92 -58.98 13.97 21.65 0.30 -58.67 16 23 Si 0.92 47.93 27.74 68.60 1.90 49.84 16 24 H -0.26 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.25 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.24 -12.47 6.74 99.48 0.67 -11.80 16 27 C 0.51 12.43 7.60 87.90 0.67 13.10 16 28 O -0.57 -19.37 13.56 -3.03 -0.04 -19.41 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.44 7.93 -2.39 -0.02 1.43 16 34 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.12 0.11 5.96 -2.39 -0.01 0.10 16 37 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 38 H 0.10 0.11 7.29 -2.38 -0.02 0.09 16 39 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16 44 H 0.41 13.30 5.17 -92.71 -0.48 12.82 16 45 H 0.09 4.68 7.75 -2.40 -0.02 4.66 16 46 H 0.10 4.55 8.14 -2.40 -0.02 4.53 16 47 H 0.28 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -89.13 388.55 -1.88 -91.01 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.45 Total: 20.93 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.58 Total: 8.59 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -9.68 Total: -111.21 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.09 Total: -48.41 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.90 Total: 49.84 kcal Atomic # 16 Polarization: -9.70 SS G_CDS: -1.05 Total: -10.75 kcal Total: -89.13 -1.88 -91.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.767 kcal (2) G-P(sol) polarization free energy of solvation -89.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds