Wall clock time and date at job start Wed Apr 1 2020 00:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47577 * 2 1 4 4 C 1.46763 * 124.35497 * 270.00605 * 3 2 1 5 5 C 1.54474 * 105.47670 * 197.03248 * 4 3 2 6 6 C 1.54626 * 101.76475 * 334.58552 * 5 4 3 7 7 H 1.09000 * 110.59702 * 266.06313 * 6 5 4 8 8 N 1.46900 * 110.48807 * 143.47498 * 6 5 4 9 9 C 1.47955 * 111.00053 * 278.12744 * 8 6 5 10 10 C 1.53930 * 86.18395 * 222.41788 * 9 8 6 11 11 C 1.47964 * 110.99849 * 178.76853 * 8 6 5 12 12 H 1.08995 * 113.86178 * 23.25047 * 11 8 6 13 13 C 1.53004 * 113.75875 * 251.90136 * 11 8 6 14 14 N 1.46499 * 109.47198 * 58.93546 * 13 11 8 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 11 16 16 O 1.21283 * 119.99990 * 359.71991 * 15 14 13 17 17 C 1.50698 * 119.99538 * 179.72653 * 15 14 13 18 18 S 1.81005 * 109.46906 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99828 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00390 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99869 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99970 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00277 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46837 * 90.00131 * 23 21 19 25 25 H 1.48499 * 109.47248 * 210.00232 * 23 21 19 26 26 H 1.48498 * 109.46779 * 330.00348 * 23 21 19 27 27 C 1.34420 * 124.34479 * 90.02094 * 3 2 1 28 28 O 1.21278 * 124.94515 * 359.61419 * 27 3 2 29 29 H 1.09007 * 109.46635 * 300.00168 * 1 2 3 30 30 H 1.09003 * 109.47128 * 59.99224 * 1 2 3 31 31 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47163 * 240.00596 * 2 1 3 33 33 H 1.08996 * 109.47026 * 120.00410 * 2 1 3 34 34 H 1.08999 * 110.24051 * 316.03761 * 4 3 2 35 35 H 1.09001 * 110.24396 * 77.94470 * 4 3 2 36 36 H 1.08993 * 110.97357 * 216.45916 * 5 4 3 37 37 H 1.09011 * 110.96858 * 92.69696 * 5 4 3 38 38 H 1.08999 * 113.76008 * 108.09779 * 9 8 6 39 39 H 1.08997 * 113.86059 * 336.74921 * 9 8 6 40 40 H 1.09007 * 113.73636 * 269.36381 * 10 9 8 41 41 H 1.09003 * 113.83265 * 138.08757 * 10 9 8 42 42 H 1.09009 * 109.46730 * 298.93333 * 13 11 8 43 43 H 1.08998 * 109.46846 * 178.93878 * 13 11 8 44 44 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 45 45 H 1.09003 * 109.47112 * 299.99065 * 17 15 14 46 46 H 1.08993 * 109.47916 * 59.99687 * 17 15 14 47 47 H 0.97008 * 120.00004 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 -1.2116 5 6 3.1750 3.3438 -0.7487 6 6 2.7704 3.4750 0.7379 7 1 1.9764 4.2124 0.8556 8 7 3.9341 3.8392 1.5572 9 6 4.7453 2.6463 1.8860 10 6 4.8524 3.2369 3.3035 11 6 3.5535 3.9965 2.9784 12 1 2.6480 3.4565 3.2548 13 6 3.5521 5.4492 3.4590 14 7 2.6161 6.2311 2.6475 15 6 2.4523 7.5471 2.8881 16 8 3.0760 8.0828 3.7796 17 6 1.4940 8.3527 2.0493 18 16 1.4968 10.0724 2.6140 19 6 0.3265 10.7644 1.4931 20 1 -0.1428 10.1390 0.7482 21 6 0.0078 12.1132 1.5676 22 7 0.5802 12.8756 2.4753 23 14 -1.2324 12.8471 0.3789 24 1 -2.5948 12.7477 0.9612 25 1 -0.9007 14.2740 0.1359 26 1 -1.1873 12.1027 -0.9053 27 6 2.2717 2.0960 1.1099 28 8 2.1227 1.6938 2.2443 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.8320 1.5531 -1.9384 35 1 1.3637 2.5299 -1.6434 36 1 2.9315 4.2515 -1.3008 37 1 4.2337 3.1026 -0.8450 38 1 5.6965 2.6023 1.3556 39 1 4.1899 1.7095 1.8415 40 1 5.7168 3.8860 3.4442 41 1 4.7417 2.4987 4.0978 42 1 4.5547 5.8656 3.3599 43 1 3.2452 5.4857 4.5042 44 1 2.1175 5.8027 1.9342 45 1 1.8031 8.3125 1.0047 46 1 0.4899 7.9402 2.1472 47 1 0.3577 13.8184 2.5271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:37 Heat of formation + Delta-G solvation = -24.694855 kcal Electronic energy + Delta-G solvation = -27786.775285 eV Core-core repulsion = 23904.236042 eV Total energy + Delta-G solvation = -3882.539242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92968 -39.45258 -38.61063 -36.92371 -34.47214 -33.98975 -32.39831 -30.73202 -29.93066 -28.87418 -27.54897 -25.96608 -25.44805 -23.98769 -23.42957 -21.84055 -20.39662 -20.29384 -19.26720 -17.85822 -17.48563 -17.28736 -16.53659 -16.23875 -16.00947 -15.46051 -14.95609 -14.80508 -14.78038 -14.69679 -14.23487 -14.02657 -13.95338 -13.79456 -13.52754 -13.10231 -12.98143 -12.77817 -12.55340 -12.37241 -12.28530 -12.07607 -11.85953 -11.66575 -11.57855 -11.45074 -11.04647 -11.00382 -10.99447 -10.91760 -10.72381 -10.67198 -9.78246 -9.33098 -9.25396 -9.04117 -8.90095 -8.73106 -8.18864 -6.45744 -6.18620 -3.88596 2.05880 2.46886 3.06262 3.20399 3.24044 3.28023 3.31652 3.42300 3.79656 3.87373 4.01061 4.23283 4.28574 4.36036 4.46189 4.53466 4.61798 4.70056 4.81415 4.87113 4.96133 5.00350 5.08813 5.16286 5.18512 5.20672 5.27395 5.34622 5.35560 5.42225 5.45709 5.58518 5.66547 5.68798 5.71053 5.89212 5.92263 5.96947 6.02841 6.07092 6.18434 6.55636 6.66283 6.73819 7.62217 7.66888 7.80733 8.38058 8.71630 9.26490 10.88787 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002473 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.511841 B =11318.644587 C =12699.965061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.617 5.617 4 C 0.099 3.901 5 C -0.119 4.119 6 C 0.014 3.986 7 H 0.115 0.885 8 N -0.445 5.445 9 C -0.008 4.008 10 C -0.130 4.130 11 C 0.011 3.989 12 H 0.109 0.891 13 C 0.142 3.858 14 N -0.731 5.731 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.497 3.503 28 O -0.524 6.524 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.392 0.608 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 -29.347 -8.810 31.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.352 5.352 4 C -0.025 4.025 5 C -0.157 4.157 6 C -0.099 4.099 7 H 0.133 0.867 8 N -0.168 5.168 9 C -0.136 4.136 10 C -0.168 4.168 11 C -0.098 4.098 12 H 0.127 0.873 13 C 0.018 3.982 14 N -0.386 5.386 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.303 4.303 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C 0.284 3.716 28 O -0.401 6.401 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.226 0.774 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.331 -28.005 -7.002 29.553 hybrid contribution -2.377 -1.097 -2.011 3.302 sum 3.954 -29.102 -9.013 30.721 Atomic orbital electron populations 1.22159 0.95523 1.02508 1.02660 1.21375 0.94614 0.81008 1.03121 1.48435 1.65415 1.13828 1.07509 1.22196 0.99933 0.92982 0.87341 1.22612 1.00965 0.98718 0.93371 1.23111 0.96268 0.94150 0.96396 0.86692 1.68869 1.12071 1.28155 1.07695 1.24086 0.99390 0.93495 0.96669 1.23237 0.97464 0.99325 0.96762 1.24033 1.00189 0.96580 0.89000 0.87294 1.21216 0.94264 0.87926 0.94833 1.45880 1.45705 1.09318 1.37668 1.20271 0.82553 0.81319 0.84145 1.90698 1.46896 1.70054 1.31671 1.23523 1.00385 1.04120 1.02318 1.85406 1.57062 0.94474 1.46348 1.22867 1.28233 0.97055 1.20136 0.90991 1.24993 0.96577 0.95987 0.96073 1.70025 1.41097 1.06435 1.32733 0.86173 0.80608 0.78257 0.80479 1.20314 1.20769 1.19718 1.21667 0.76649 0.88544 0.84745 1.90722 1.53265 1.75353 1.20756 0.92131 0.92293 0.91311 0.90294 0.90062 0.90067 0.90647 0.88227 0.89193 0.89265 0.90321 0.88720 0.90441 0.91026 0.91112 0.77445 0.89305 0.89447 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.12 0.70 6.65 -4.04 -0.03 0.67 16 3 N -0.62 -4.33 2.93 -172.42 -0.51 -4.84 16 4 C 0.10 0.46 7.35 -3.13 -0.02 0.44 16 5 C -0.12 -0.67 6.79 -25.10 -0.17 -0.84 16 6 C 0.01 0.11 2.91 -67.72 -0.20 -0.08 16 7 H 0.12 0.98 6.47 -51.93 -0.34 0.64 16 8 N -0.45 -4.26 5.90 -222.76 -1.31 -5.58 16 9 C -0.01 -0.07 7.28 -2.77 -0.02 -0.09 16 10 C -0.13 -1.17 7.84 -25.80 -0.20 -1.37 16 11 C 0.01 0.12 3.09 -66.65 -0.21 -0.09 16 12 H 0.11 1.30 5.86 -51.93 -0.30 1.00 16 13 C 0.14 1.86 5.80 -4.04 -0.02 1.84 16 14 N -0.73 -10.68 5.50 -60.29 -0.33 -11.01 16 15 C 0.53 10.39 7.85 -10.99 -0.09 10.31 16 16 O -0.52 -12.25 15.86 5.55 0.09 -12.16 16 17 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.50 4.75 5.56 -10.86 -0.06 4.69 16 28 O -0.52 -6.63 13.97 5.56 0.08 -6.55 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.52 7.90 -51.92 -0.41 0.11 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.76 5.11 -51.93 -0.27 0.50 16 40 H 0.09 0.82 7.94 -51.92 -0.41 0.40 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.00 7.91 -51.92 -0.41 0.59 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.39 4.77 6.55 -40.82 -0.27 4.50 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -36.35 390.82 -10.25 -46.60 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.44 Total: 1.83 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.22 Total: -1.16 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -1.42 Total: -47.09 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.35 -10.25 -46.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.907 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds