Wall clock time and date at job start Wed Apr 1 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47577 * 2 1 4 4 C 1.46763 * 124.35497 * 270.00605 * 3 2 1 5 5 C 1.54474 * 105.47670 * 197.03248 * 4 3 2 6 6 C 1.54626 * 101.76475 * 334.58552 * 5 4 3 7 7 H 1.09000 * 110.59702 * 266.06313 * 6 5 4 8 8 N 1.46900 * 110.48807 * 143.47498 * 6 5 4 9 9 C 1.47955 * 111.00053 * 278.12744 * 8 6 5 10 10 C 1.53930 * 86.18395 * 222.41788 * 9 8 6 11 11 C 1.47964 * 110.99849 * 178.76853 * 8 6 5 12 12 H 1.08995 * 113.86178 * 23.25047 * 11 8 6 13 13 C 1.53004 * 113.75875 * 251.90136 * 11 8 6 14 14 N 1.46499 * 109.47198 * 58.93546 * 13 11 8 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 11 16 16 O 1.21283 * 119.99990 * 359.71991 * 15 14 13 17 17 C 1.50698 * 119.99538 * 179.72653 * 15 14 13 18 18 S 1.81005 * 109.46906 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99828 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00390 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99869 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99970 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00277 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46837 * 90.00131 * 23 21 19 25 25 H 1.48499 * 109.47248 * 210.00232 * 23 21 19 26 26 H 1.48498 * 109.46779 * 330.00348 * 23 21 19 27 27 C 1.34420 * 124.34479 * 90.02094 * 3 2 1 28 28 O 1.21278 * 124.94515 * 359.61419 * 27 3 2 29 29 H 1.09007 * 109.46635 * 300.00168 * 1 2 3 30 30 H 1.09003 * 109.47128 * 59.99224 * 1 2 3 31 31 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47163 * 240.00596 * 2 1 3 33 33 H 1.08996 * 109.47026 * 120.00410 * 2 1 3 34 34 H 1.08999 * 110.24051 * 316.03761 * 4 3 2 35 35 H 1.09001 * 110.24396 * 77.94470 * 4 3 2 36 36 H 1.08993 * 110.97357 * 216.45916 * 5 4 3 37 37 H 1.09011 * 110.96858 * 92.69696 * 5 4 3 38 38 H 1.08999 * 113.76008 * 108.09779 * 9 8 6 39 39 H 1.08997 * 113.86059 * 336.74921 * 9 8 6 40 40 H 1.09007 * 113.73636 * 269.36381 * 10 9 8 41 41 H 1.09003 * 113.83265 * 138.08757 * 10 9 8 42 42 H 1.09009 * 109.46730 * 298.93333 * 13 11 8 43 43 H 1.08998 * 109.46846 * 178.93878 * 13 11 8 44 44 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 45 45 H 1.09003 * 109.47112 * 299.99065 * 17 15 14 46 46 H 1.08993 * 109.47916 * 59.99687 * 17 15 14 47 47 H 0.97008 * 120.00004 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 -1.2116 5 6 3.1750 3.3438 -0.7487 6 6 2.7704 3.4750 0.7379 7 1 1.9764 4.2124 0.8556 8 7 3.9341 3.8392 1.5572 9 6 4.7453 2.6463 1.8860 10 6 4.8524 3.2369 3.3035 11 6 3.5535 3.9965 2.9784 12 1 2.6480 3.4565 3.2548 13 6 3.5521 5.4492 3.4590 14 7 2.6161 6.2311 2.6475 15 6 2.4523 7.5471 2.8881 16 8 3.0760 8.0828 3.7796 17 6 1.4940 8.3527 2.0493 18 16 1.4968 10.0724 2.6140 19 6 0.3265 10.7644 1.4931 20 1 -0.1428 10.1390 0.7482 21 6 0.0078 12.1132 1.5676 22 7 0.5802 12.8756 2.4753 23 14 -1.2324 12.8471 0.3789 24 1 -2.5948 12.7477 0.9612 25 1 -0.9007 14.2740 0.1359 26 1 -1.1873 12.1027 -0.9053 27 6 2.2717 2.0960 1.1099 28 8 2.1227 1.6938 2.2443 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.8320 1.5531 -1.9384 35 1 1.3637 2.5299 -1.6434 36 1 2.9315 4.2515 -1.3008 37 1 4.2337 3.1026 -0.8450 38 1 5.6965 2.6023 1.3556 39 1 4.1899 1.7095 1.8415 40 1 5.7168 3.8860 3.4442 41 1 4.7417 2.4987 4.0978 42 1 4.5547 5.8656 3.3599 43 1 3.2452 5.4857 4.5042 44 1 2.1175 5.8027 1.9342 45 1 1.8031 8.3125 1.0047 46 1 0.4899 7.9402 2.1472 47 1 0.3577 13.8184 2.5271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:36 Heat of formation + Delta-G solvation = -52.409378 kcal Electronic energy + Delta-G solvation = -27787.977077 eV Core-core repulsion = 23904.236042 eV Total energy + Delta-G solvation = -3883.741034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62500 -40.63372 -39.69124 -37.60611 -35.65212 -34.72680 -34.56917 -31.68706 -31.06721 -29.45057 -28.74962 -27.61660 -26.59555 -24.51037 -24.33191 -22.41774 -21.79620 -21.10063 -20.11438 -19.71306 -18.23035 -17.94689 -17.72237 -17.38674 -17.07381 -16.86703 -16.64305 -15.90899 -15.89770 -15.63685 -15.25054 -14.95988 -14.79564 -14.57602 -14.50525 -14.41357 -14.21207 -13.88818 -13.41015 -13.29029 -13.15323 -12.90007 -12.85343 -12.79532 -12.77255 -12.62501 -12.54111 -12.16144 -11.99925 -11.84335 -11.69221 -11.63743 -11.37645 -11.13100 -10.93427 -10.26411 -10.11877 -9.83728 -9.61559 -8.65607 -8.33171 -6.11421 1.27234 1.36735 1.43741 1.47988 1.58344 1.62482 1.95641 2.22384 2.29062 2.69960 3.00871 3.27483 3.32752 3.41945 3.59651 3.71613 3.87268 3.90658 4.04934 4.09309 4.12497 4.19379 4.26931 4.29623 4.33433 4.41609 4.45097 4.49839 4.61877 4.65577 4.71706 4.79579 4.84090 4.88888 4.91049 5.03923 5.04951 5.18544 5.21757 5.23211 5.42958 5.43975 5.56609 5.85690 6.02967 6.21209 6.46810 7.02084 7.07838 7.22923 8.76099 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002473 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.511841 B =11318.644587 C =12699.965061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.613 5.613 4 C 0.098 3.902 5 C -0.112 4.112 6 C 0.008 3.992 7 H 0.112 0.888 8 N -0.449 5.449 9 C 0.001 3.999 10 C -0.126 4.126 11 C 0.016 3.984 12 H 0.097 0.903 13 C 0.144 3.856 14 N -0.707 5.707 15 C 0.533 3.467 16 O -0.565 6.565 17 C -0.128 4.128 18 S -0.151 6.151 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.256 1.256 27 C 0.490 3.510 28 O -0.565 6.565 29 H 0.031 0.969 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.407 0.593 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -31.049 -11.989 33.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.347 5.347 4 C -0.024 4.024 5 C -0.150 4.150 6 C -0.105 4.105 7 H 0.130 0.870 8 N -0.172 5.172 9 C -0.127 4.127 10 C -0.164 4.164 11 C -0.094 4.094 12 H 0.115 0.885 13 C 0.020 3.980 14 N -0.360 5.360 15 C 0.319 3.681 16 O -0.444 6.444 17 C -0.279 4.279 18 S 0.077 5.923 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.180 1.180 27 C 0.277 3.723 28 O -0.445 6.445 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.243 0.757 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.744 -29.775 -10.244 32.008 hybrid contribution -2.167 -0.725 -1.034 2.508 sum 3.577 -30.500 -11.278 32.715 Atomic orbital electron populations 1.22113 0.95474 1.03152 1.01581 1.21511 0.94610 0.80511 1.03827 1.48580 1.64165 1.14227 1.07684 1.22402 1.00664 0.92677 0.86641 1.22640 1.01341 0.99773 0.91202 1.23215 0.95809 0.93496 0.97976 0.87009 1.68855 1.12678 1.28830 1.06798 1.24016 0.99653 0.92680 0.96380 1.23254 0.96612 0.99184 0.97374 1.23841 1.00645 0.94477 0.90394 0.88508 1.21301 0.93258 0.89088 0.94367 1.45656 1.45139 1.07661 1.37534 1.20092 0.82014 0.82570 0.83449 1.90687 1.48750 1.71300 1.33651 1.23358 1.02044 0.99261 1.03283 1.85606 1.57838 1.00696 1.48199 1.23200 1.28189 0.97724 1.20179 0.89842 1.26153 0.98712 0.96420 0.97984 1.70194 1.42939 1.06868 1.34839 0.84935 0.77465 0.77299 0.78155 1.19411 1.20325 1.17996 1.21868 0.76585 0.89149 0.84720 1.90697 1.55205 1.76186 1.22398 0.94929 0.91476 0.89907 0.87298 0.91614 0.87592 0.89412 0.87067 0.88935 0.87673 0.91199 0.88109 0.90161 0.91624 0.91858 0.75683 0.87076 0.87474 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 71.98 0.74 -0.92 16 2 C 0.12 1.14 6.65 86.38 0.57 1.71 16 3 N -0.61 -7.42 2.93 -818.00 -2.40 -9.82 16 4 C 0.10 0.59 7.35 86.83 0.64 1.23 16 5 C -0.11 -0.95 6.79 31.65 0.21 -0.73 16 6 C 0.01 0.12 2.91 44.91 0.13 0.25 16 7 H 0.11 1.72 6.47 -2.39 -0.02 1.71 16 8 N -0.45 -7.97 5.90 -858.68 -5.06 -13.03 16 9 C 0.00 0.01 7.28 86.40 0.63 0.64 16 10 C -0.13 -2.17 7.84 31.24 0.25 -1.93 16 11 C 0.02 0.33 3.09 45.02 0.14 0.47 16 12 H 0.10 2.34 5.86 -2.39 -0.01 2.32 16 13 C 0.14 3.74 5.80 86.38 0.50 4.24 16 14 N -0.71 -20.05 5.50 -463.05 -2.55 -22.60 16 15 C 0.53 20.76 7.85 87.66 0.69 21.45 16 16 O -0.57 -27.35 15.86 -3.04 -0.05 -27.40 16 17 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -31.30 9.50 67.95 0.65 -30.66 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 23 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 27 C 0.49 8.91 5.56 87.90 0.49 9.40 16 28 O -0.56 -14.44 13.97 -3.02 -0.04 -14.49 16 29 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 34 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.77 7.90 -2.38 -0.02 0.75 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.29 5.11 -2.39 -0.01 1.28 16 40 H 0.10 1.63 7.94 -2.38 -0.02 1.61 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.83 7.91 -2.38 -0.02 1.81 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.41 9.26 6.55 -92.71 -0.61 8.65 16 45 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 46 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 47 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -81.65 390.82 -2.04 -83.69 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.37 Total: 22.31 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.54 Total: 1.52 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -9.72 Total: -101.63 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.09 Total: -41.88 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -81.65 -2.04 -83.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.282 kcal (2) G-P(sol) polarization free energy of solvation -81.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds