Wall clock time and date at job start Wed Apr 1 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47698 * 2 1 4 4 C 1.46764 * 124.34832 * 90.00077 * 3 2 1 5 5 C 1.54471 * 105.47229 * 162.98813 * 4 3 2 6 6 C 1.54629 * 101.76671 * 25.41474 * 5 4 3 7 7 H 1.08998 * 110.48637 * 94.01833 * 6 5 4 8 8 N 1.46900 * 110.48674 * 216.52451 * 6 5 4 9 9 C 1.47475 * 110.99937 * 83.10877 * 8 6 5 10 10 C 1.53512 * 87.93126 * 138.70564 * 9 8 6 11 11 C 1.47474 * 111.00232 * 179.08481 * 8 6 5 12 12 H 1.09010 * 113.47266 * 336.11758 * 11 8 6 13 13 C 1.52996 * 113.48439 * 106.52827 * 11 8 6 14 14 N 1.46503 * 109.46973 * 305.00254 * 13 11 8 15 15 C 1.34775 * 120.00120 * 179.97438 * 14 13 11 16 16 O 1.21284 * 119.99840 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99734 * 179.97438 * 15 14 13 18 18 S 1.81006 * 109.46819 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99775 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00385 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99527 * 179.72766 * 19 18 17 22 22 N 1.31623 * 120.00287 * 0.27306 * 21 19 18 23 23 Si 1.86805 * 119.99800 * 180.27521 * 21 19 18 24 24 H 1.48501 * 109.47203 * 89.99913 * 23 21 19 25 25 H 1.48499 * 109.47218 * 209.99938 * 23 21 19 26 26 H 1.48505 * 109.47005 * 329.99959 * 23 21 19 27 27 C 1.34419 * 124.35084 * 270.00451 * 3 2 1 28 28 O 1.21285 * 124.94262 * 0.43974 * 27 3 2 29 29 H 1.09005 * 109.46744 * 300.00117 * 1 2 3 30 30 H 1.08998 * 109.47190 * 59.99702 * 1 2 3 31 31 H 1.09001 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47238 * 239.99787 * 2 1 3 33 33 H 1.08998 * 109.47190 * 120.00298 * 2 1 3 34 34 H 1.08999 * 110.24541 * 43.98760 * 4 3 2 35 35 H 1.09004 * 110.31828 * 282.02548 * 4 3 2 36 36 H 1.09005 * 110.96973 * 267.29218 * 5 4 3 37 37 H 1.09005 * 111.00262 * 143.54589 * 5 4 3 38 38 H 1.09004 * 113.47718 * 253.46541 * 9 8 6 39 39 H 1.08994 * 113.47799 * 23.88007 * 9 8 6 40 40 H 1.09004 * 114.17224 * 220.32963 * 10 9 8 41 41 H 1.08998 * 114.17485 * 87.62309 * 10 9 8 42 42 H 1.08998 * 109.47497 * 185.00335 * 13 11 8 43 43 H 1.09003 * 109.47266 * 64.99528 * 13 11 8 44 44 H 0.97006 * 119.99942 * 359.97438 * 14 13 11 45 45 H 1.09000 * 109.47294 * 60.00709 * 17 15 14 46 46 H 1.08990 * 109.47612 * 300.00031 * 17 15 14 47 47 H 0.97010 * 120.00136 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1746 3.3439 0.7487 6 6 2.7696 3.4753 -0.7378 7 1 1.9763 4.2139 -0.8532 8 7 3.9329 3.8399 -1.5573 9 6 4.7255 2.6474 -1.9101 10 6 4.8821 3.2367 -3.3189 11 6 3.5638 3.9470 -2.9811 12 1 2.6780 3.3688 -3.2447 13 6 3.5012 5.3892 -3.4880 14 7 2.5904 6.1649 -2.6423 15 6 2.3777 7.4703 -2.9013 16 8 2.9401 8.0028 -3.8347 17 6 1.4404 8.2680 -2.0318 18 16 1.3665 9.9743 -2.6313 19 6 0.2348 10.6588 -1.4670 20 1 -0.1788 10.0375 -0.6864 21 6 -0.1202 11.9981 -1.5494 22 7 0.3842 12.7555 -2.5004 23 14 -1.3140 12.7258 -0.3104 24 1 -0.5584 13.2542 0.8537 25 1 -2.0771 13.8290 -0.9473 26 1 -2.2555 11.6725 0.1473 27 6 2.2712 2.0963 -1.1098 28 8 2.1210 1.6946 -2.2442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.8326 1.5530 1.9383 35 1 1.3646 2.5308 1.6444 36 1 4.2334 3.1031 0.8448 37 1 2.9315 4.2518 1.3009 38 1 5.6657 2.5735 -1.3635 39 1 4.1508 1.7216 -1.8871 40 1 4.8010 2.5031 -4.1211 41 1 5.7343 3.9069 -3.4303 42 1 3.1386 5.3977 -4.5158 43 1 4.4969 5.8311 -3.4502 44 1 2.1404 5.7389 -1.8960 45 1 1.8024 8.2592 -1.0037 46 1 0.4447 7.8264 -2.0702 47 1 0.1363 13.6916 -2.5577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498927723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:39 Heat of formation + Delta-G solvation = -20.063959 kcal Electronic energy + Delta-G solvation = -27848.079521 eV Core-core repulsion = 23965.741090 eV Total energy + Delta-G solvation = -3882.338432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07199 -39.52182 -38.64775 -36.94964 -34.46486 -34.01624 -32.39895 -30.77945 -29.92241 -28.91703 -27.48165 -26.03308 -25.44427 -23.99911 -23.33426 -21.85648 -20.43857 -20.32368 -19.31353 -17.87358 -17.50052 -17.29911 -16.55031 -16.23910 -16.00543 -15.44074 -14.93849 -14.80718 -14.78014 -14.70535 -14.22765 -14.03576 -13.96872 -13.78245 -13.56612 -13.11166 -12.98634 -12.78671 -12.55289 -12.37897 -12.28670 -12.06466 -11.88557 -11.66146 -11.56702 -11.45144 -11.08014 -11.04253 -10.99453 -10.83425 -10.72666 -10.67816 -9.78101 -9.33404 -9.26530 -9.04105 -8.93064 -8.72147 -8.18744 -6.45680 -6.18571 -3.88514 2.03737 2.45444 3.07671 3.20813 3.24077 3.29071 3.32539 3.45590 3.79775 3.86414 3.98495 4.23317 4.24852 4.36484 4.44642 4.52532 4.62287 4.70401 4.80398 4.86779 4.97153 4.99636 5.07232 5.16331 5.20127 5.20400 5.27264 5.34781 5.35243 5.42137 5.44675 5.58471 5.66812 5.68767 5.70640 5.88228 5.90603 5.96164 6.02395 6.05982 6.18417 6.54384 6.66893 6.74527 7.62209 7.64810 7.81291 8.38063 8.72143 9.26518 10.88839 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.002510 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.991001 B =11152.010880 C =12541.276870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.616 5.616 4 C 0.098 3.902 5 C -0.119 4.119 6 C 0.012 3.988 7 H 0.116 0.884 8 N -0.438 5.438 9 C -0.014 4.014 10 C -0.129 4.129 11 C 0.004 3.996 12 H 0.113 0.887 13 C 0.140 3.860 14 N -0.731 5.731 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.498 3.502 28 O -0.524 6.524 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.391 0.609 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -29.172 8.972 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.351 5.351 4 C -0.025 4.025 5 C -0.157 4.157 6 C -0.101 4.101 7 H 0.134 0.866 8 N -0.160 5.160 9 C -0.143 4.143 10 C -0.168 4.168 11 C -0.105 4.105 12 H 0.131 0.869 13 C 0.015 3.985 14 N -0.386 5.386 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C 0.285 3.715 28 O -0.400 6.400 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.225 0.775 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.811 -27.820 7.103 29.509 hybrid contribution -2.237 -1.078 2.130 3.271 sum 4.574 -28.897 9.232 30.679 Atomic orbital electron populations 1.22159 0.95494 1.02529 1.02680 1.21382 0.94636 0.80961 1.03151 1.48437 1.65329 1.13848 1.07483 1.22198 0.99963 0.92968 0.87342 1.22616 1.01005 0.98770 0.93279 1.23135 0.96294 0.94194 0.96502 0.86607 1.69282 1.12066 1.27630 1.07063 1.24015 0.99618 0.93840 0.96777 1.23067 0.97235 0.99722 0.96741 1.24053 1.00394 0.96953 0.89130 0.86944 1.21267 0.94614 0.88360 0.94217 1.45900 1.48404 1.10377 1.33898 1.20274 0.81877 0.81247 0.84931 1.90697 1.48985 1.69639 1.30007 1.23523 1.00501 1.04158 1.02168 1.85407 1.59975 0.96119 1.41777 1.22869 1.30770 0.97961 1.16705 0.90992 1.24991 0.96499 0.95965 0.96166 1.70021 1.42130 1.06960 1.31173 0.86175 0.80233 0.78671 0.80448 1.20289 1.20778 1.19730 1.21635 0.76631 0.88497 0.84755 1.90712 1.53261 1.75349 1.20707 0.92283 0.92112 0.91293 0.90036 0.90267 0.90020 0.90592 0.89171 0.88178 0.89643 0.90139 0.90118 0.88495 0.91228 0.91090 0.77459 0.89314 0.89462 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.12 0.69 6.65 -4.04 -0.03 0.66 16 3 N -0.62 -4.31 2.93 -172.42 -0.51 -4.81 16 4 C 0.10 0.46 7.35 -3.13 -0.02 0.43 16 5 C -0.12 -0.67 6.80 -25.10 -0.17 -0.84 16 6 C 0.01 0.10 2.89 -67.73 -0.20 -0.10 16 7 H 0.12 0.99 6.30 -51.93 -0.33 0.67 16 8 N -0.44 -4.22 5.95 -228.54 -1.36 -5.58 16 9 C -0.01 -0.12 7.15 -7.55 -0.05 -0.18 16 10 C -0.13 -1.16 8.00 -26.20 -0.21 -1.37 16 11 C 0.00 0.04 3.02 -71.44 -0.22 -0.17 16 12 H 0.11 1.36 5.58 -51.92 -0.29 1.07 16 13 C 0.14 1.85 5.81 -4.04 -0.02 1.83 16 14 N -0.73 -10.80 5.46 -60.29 -0.33 -11.13 16 15 C 0.53 10.45 7.85 -10.99 -0.09 10.37 16 16 O -0.52 -12.31 15.86 5.55 0.09 -12.22 16 17 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 23 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.50 4.75 5.59 -10.86 -0.06 4.69 16 28 O -0.52 -6.59 13.72 5.55 0.08 -6.51 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.52 7.94 -51.93 -0.41 0.10 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.79 4.95 -51.93 -0.26 0.53 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.84 7.94 -51.93 -0.41 0.42 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 44 H 0.39 4.84 6.21 -40.82 -0.25 4.58 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -36.39 389.62 -10.32 -46.71 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.39 Total: 2.05 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.27 Total: -1.33 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -1.46 Total: -47.21 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.16 Total: -18.73 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.39 -10.32 -46.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.641 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds