Wall clock time and date at job start Wed Apr 1 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47698 * 2 1 4 4 C 1.46764 * 124.34832 * 90.00077 * 3 2 1 5 5 C 1.54471 * 105.47229 * 162.98813 * 4 3 2 6 6 C 1.54629 * 101.76671 * 25.41474 * 5 4 3 7 7 H 1.08998 * 110.48637 * 94.01833 * 6 5 4 8 8 N 1.46900 * 110.48674 * 216.52451 * 6 5 4 9 9 C 1.47475 * 110.99937 * 83.10877 * 8 6 5 10 10 C 1.53512 * 87.93126 * 138.70564 * 9 8 6 11 11 C 1.47474 * 111.00232 * 179.08481 * 8 6 5 12 12 H 1.09010 * 113.47266 * 336.11758 * 11 8 6 13 13 C 1.52996 * 113.48439 * 106.52827 * 11 8 6 14 14 N 1.46503 * 109.46973 * 305.00254 * 13 11 8 15 15 C 1.34775 * 120.00120 * 179.97438 * 14 13 11 16 16 O 1.21284 * 119.99840 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99734 * 179.97438 * 15 14 13 18 18 S 1.81006 * 109.46819 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99775 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00385 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99527 * 179.72766 * 19 18 17 22 22 N 1.31623 * 120.00287 * 0.27306 * 21 19 18 23 23 Si 1.86805 * 119.99800 * 180.27521 * 21 19 18 24 24 H 1.48501 * 109.47203 * 89.99913 * 23 21 19 25 25 H 1.48499 * 109.47218 * 209.99938 * 23 21 19 26 26 H 1.48505 * 109.47005 * 329.99959 * 23 21 19 27 27 C 1.34419 * 124.35084 * 270.00451 * 3 2 1 28 28 O 1.21285 * 124.94262 * 0.43974 * 27 3 2 29 29 H 1.09005 * 109.46744 * 300.00117 * 1 2 3 30 30 H 1.08998 * 109.47190 * 59.99702 * 1 2 3 31 31 H 1.09001 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47238 * 239.99787 * 2 1 3 33 33 H 1.08998 * 109.47190 * 120.00298 * 2 1 3 34 34 H 1.08999 * 110.24541 * 43.98760 * 4 3 2 35 35 H 1.09004 * 110.31828 * 282.02548 * 4 3 2 36 36 H 1.09005 * 110.96973 * 267.29218 * 5 4 3 37 37 H 1.09005 * 111.00262 * 143.54589 * 5 4 3 38 38 H 1.09004 * 113.47718 * 253.46541 * 9 8 6 39 39 H 1.08994 * 113.47799 * 23.88007 * 9 8 6 40 40 H 1.09004 * 114.17224 * 220.32963 * 10 9 8 41 41 H 1.08998 * 114.17485 * 87.62309 * 10 9 8 42 42 H 1.08998 * 109.47497 * 185.00335 * 13 11 8 43 43 H 1.09003 * 109.47266 * 64.99528 * 13 11 8 44 44 H 0.97006 * 119.99942 * 359.97438 * 14 13 11 45 45 H 1.09000 * 109.47294 * 60.00709 * 17 15 14 46 46 H 1.08990 * 109.47612 * 300.00031 * 17 15 14 47 47 H 0.97010 * 120.00136 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1746 3.3439 0.7487 6 6 2.7696 3.4753 -0.7378 7 1 1.9763 4.2139 -0.8532 8 7 3.9329 3.8399 -1.5573 9 6 4.7255 2.6474 -1.9101 10 6 4.8821 3.2367 -3.3189 11 6 3.5638 3.9470 -2.9811 12 1 2.6780 3.3688 -3.2447 13 6 3.5012 5.3892 -3.4880 14 7 2.5904 6.1649 -2.6423 15 6 2.3777 7.4703 -2.9013 16 8 2.9401 8.0028 -3.8347 17 6 1.4404 8.2680 -2.0318 18 16 1.3665 9.9743 -2.6313 19 6 0.2348 10.6588 -1.4670 20 1 -0.1788 10.0375 -0.6864 21 6 -0.1202 11.9981 -1.5494 22 7 0.3842 12.7555 -2.5004 23 14 -1.3140 12.7258 -0.3104 24 1 -0.5584 13.2542 0.8537 25 1 -2.0771 13.8290 -0.9473 26 1 -2.2555 11.6725 0.1473 27 6 2.2712 2.0963 -1.1098 28 8 2.1210 1.6946 -2.2442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.8326 1.5530 1.9383 35 1 1.3646 2.5308 1.6444 36 1 4.2334 3.1031 0.8448 37 1 2.9315 4.2518 1.3009 38 1 5.6657 2.5735 -1.3635 39 1 4.1508 1.7216 -1.8871 40 1 4.8010 2.5031 -4.1211 41 1 5.7343 3.9069 -3.4303 42 1 3.1386 5.3977 -4.5158 43 1 4.4969 5.8311 -3.4502 44 1 2.1404 5.7389 -1.8960 45 1 1.8024 8.2592 -1.0037 46 1 0.4447 7.8264 -2.0702 47 1 0.1363 13.6916 -2.5577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498927723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:39 Heat of formation + Delta-G solvation = -47.891888 kcal Electronic energy + Delta-G solvation = -27849.286231 eV Core-core repulsion = 23965.741090 eV Total energy + Delta-G solvation = -3883.545141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77532 -40.64878 -39.78526 -37.62901 -35.64424 -34.76591 -34.57250 -31.69639 -31.11243 -29.48775 -28.69796 -27.61348 -26.65997 -24.48622 -24.26311 -22.43935 -21.80094 -21.17986 -20.12869 -19.74465 -18.25617 -17.97104 -17.72313 -17.39221 -17.07567 -16.86910 -16.64185 -15.90675 -15.89037 -15.63076 -15.26150 -14.95774 -14.80774 -14.57587 -14.51248 -14.42760 -14.24422 -13.90092 -13.42310 -13.29730 -13.15634 -12.89550 -12.85357 -12.79700 -12.76233 -12.62907 -12.56424 -12.15011 -11.97402 -11.84837 -11.72891 -11.59591 -11.41654 -11.13138 -10.92776 -10.26779 -10.12442 -9.86575 -9.63447 -8.65977 -8.33346 -6.11676 1.26914 1.34860 1.43727 1.47755 1.58213 1.61817 1.94396 2.23250 2.28952 2.75847 3.00699 3.25938 3.32289 3.36717 3.57628 3.74709 3.85200 3.88947 4.05435 4.08824 4.12531 4.18694 4.26630 4.28104 4.33604 4.41603 4.45030 4.49041 4.61951 4.65387 4.71210 4.79356 4.83793 4.88798 4.92165 5.01713 5.03394 5.15927 5.20445 5.23118 5.42716 5.43741 5.55702 5.85518 6.01987 6.20985 6.46097 7.00270 7.07623 7.22285 8.75946 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.002510 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.991001 B =11152.010880 C =12541.276870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.612 5.612 4 C 0.098 3.902 5 C -0.112 4.112 6 C 0.006 3.994 7 H 0.112 0.888 8 N -0.442 5.442 9 C -0.005 4.005 10 C -0.125 4.125 11 C 0.009 3.991 12 H 0.101 0.899 13 C 0.141 3.859 14 N -0.707 5.707 15 C 0.532 3.468 16 O -0.565 6.565 17 C -0.128 4.128 18 S -0.150 6.150 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.257 1.257 27 C 0.490 3.510 28 O -0.564 6.564 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.406 0.594 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -30.872 12.225 33.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.346 5.346 4 C -0.024 4.024 5 C -0.150 4.150 6 C -0.107 4.107 7 H 0.130 0.870 8 N -0.165 5.165 9 C -0.134 4.134 10 C -0.163 4.163 11 C -0.101 4.101 12 H 0.118 0.882 13 C 0.017 3.983 14 N -0.360 5.360 15 C 0.318 3.682 16 O -0.444 6.444 17 C -0.279 4.279 18 S 0.077 5.923 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.181 1.181 27 C 0.277 3.723 28 O -0.444 6.444 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.243 0.757 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.349 -29.586 10.420 32.004 hybrid contribution -2.062 -0.703 1.129 2.454 sum 4.287 -30.289 11.549 32.699 Atomic orbital electron populations 1.22113 0.95473 1.03169 1.01588 1.21518 0.94606 0.80458 1.03880 1.48581 1.64070 1.14249 1.07651 1.22407 1.00697 0.92665 0.86645 1.22646 1.01390 0.99844 0.91074 1.23237 0.95810 0.93551 0.98120 0.87002 1.69264 1.12687 1.28343 1.06162 1.23928 0.99833 0.93022 0.96576 1.23096 0.96255 0.99621 0.97366 1.23895 1.00961 0.94720 0.90480 0.88174 1.21368 0.93618 0.89581 0.93745 1.45683 1.47655 1.08724 1.33956 1.20106 0.81419 0.82475 0.84193 1.90686 1.50862 1.70905 1.31937 1.23357 1.02160 0.99418 1.03012 1.85608 1.60692 1.02218 1.43806 1.23202 1.30749 0.98629 1.16739 0.89835 1.26154 0.98424 0.96369 0.98311 1.70190 1.43857 1.07409 1.33382 0.84933 0.77579 0.77886 0.77440 1.19183 1.20403 1.18125 1.21828 0.76592 0.89091 0.84744 1.90687 1.55182 1.76165 1.22333 0.91477 0.94929 0.89888 0.91559 0.87252 0.87515 0.89358 0.88901 0.86993 0.88110 0.91018 0.89649 0.87913 0.92053 0.91666 0.75717 0.87064 0.87500 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.12 1.13 6.65 86.38 0.57 1.70 16 3 N -0.61 -7.36 2.93 -818.01 -2.40 -9.76 16 4 C 0.10 0.58 7.35 86.83 0.64 1.22 16 5 C -0.11 -0.94 6.80 31.65 0.22 -0.73 16 6 C 0.01 0.09 2.89 44.91 0.13 0.21 16 7 H 0.11 1.75 6.30 -2.39 -0.02 1.73 16 8 N -0.44 -7.91 5.95 -876.98 -5.22 -13.12 16 9 C -0.01 -0.09 7.15 83.57 0.60 0.51 16 10 C -0.13 -2.15 8.00 30.94 0.25 -1.90 16 11 C 0.01 0.19 3.02 42.19 0.13 0.32 16 12 H 0.10 2.44 5.58 -2.38 -0.01 2.43 16 13 C 0.14 3.72 5.81 86.38 0.50 4.22 16 14 N -0.71 -20.34 5.46 -463.06 -2.53 -22.87 16 15 C 0.53 20.91 7.85 87.66 0.69 21.60 16 16 O -0.57 -27.51 15.86 -3.04 -0.05 -27.56 16 17 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 18 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 19 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 23 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 27 C 0.49 8.91 5.59 87.90 0.49 9.40 16 28 O -0.56 -14.35 13.72 -3.05 -0.04 -14.39 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 33 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.09 0.77 7.94 -2.38 -0.02 0.75 16 37 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.34 4.95 -2.39 -0.01 1.32 16 40 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.10 1.66 7.94 -2.39 -0.02 1.64 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.84 7.88 -2.39 -0.02 1.82 16 44 H 0.41 9.42 6.21 -92.70 -0.58 8.85 16 45 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 46 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 47 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -81.76 389.62 -2.18 -83.94 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.40 Total: 22.74 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 6.50 Total: 1.26 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -9.86 Total: -101.98 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.09 Total: -41.95 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -81.76 -2.18 -83.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498927723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.047 kcal (2) G-P(sol) polarization free energy of solvation -81.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds