Wall clock time and date at job start Wed Apr 1 2020 00:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09001 * 110.88696 * 296.12217 * 13 2 1 15 15 C 1.55164 * 111.00379 * 60.00011 * 13 2 1 16 16 C 1.54324 * 102.94265 * 153.57706 * 15 13 2 17 17 N 1.47023 * 107.27096 * 337.80756 * 16 15 13 18 18 C 1.34781 * 125.64610 * 178.98743 * 17 16 15 19 19 O 1.21479 * 119.99771 * 179.97438 * 18 17 16 20 20 C 1.48435 * 120.00163 * 359.97391 * 18 17 16 21 21 N 1.33492 * 119.21640 * 359.72961 * 20 18 17 22 22 N 1.28922 * 122.01815 * 179.73923 * 21 20 18 23 23 C 1.33805 * 119.74518 * 0.52706 * 22 21 20 24 24 C 1.40339 * 121.78091 * 179.74575 * 23 22 21 25 25 C 1.36188 * 119.62889 * 180.02562 * 24 23 22 26 26 C 1.39441 * 121.06944 * 359.97438 * 25 24 23 27 27 C 1.36139 * 121.01609 * 359.97438 * 26 25 24 28 28 C 1.40510 * 119.56106 * 0.02562 * 27 26 25 29 29 N 1.32059 * 119.21935 * 180.02562 * 20 18 17 30 30 C 1.47420 * 108.70349 * 358.94221 * 17 16 15 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 35 35 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71706 * 271.94403 * 15 13 2 37 37 H 1.09003 * 110.71915 * 35.21610 * 15 13 2 38 38 H 1.08998 * 109.88103 * 97.22689 * 16 15 13 39 39 H 1.08999 * 109.88115 * 218.38900 * 16 15 13 40 40 H 1.08003 * 120.18426 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.46520 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.49570 * 180.02562 * 26 25 24 43 43 H 1.07991 * 120.22342 * 180.02562 * 27 26 25 44 44 H 1.08998 * 110.36515 * 265.28538 * 30 17 16 45 45 H 1.09000 * 110.36924 * 142.96936 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 1.7469 -1.7710 -1.2387 15 6 1.5426 -0.0178 -2.5396 16 6 2.6251 -0.3893 -3.5749 17 7 3.8428 -0.7365 -2.8278 18 6 5.0100 -1.1362 -3.3704 19 8 5.9550 -1.3979 -2.6533 20 6 5.1409 -1.2565 -4.8441 21 7 4.0908 -0.9702 -5.6170 22 7 4.1458 -1.0515 -6.9025 23 6 5.2798 -1.4433 -7.4949 24 6 5.3856 -1.5518 -8.8901 25 6 6.5611 -1.9554 -9.4469 26 6 7.6652 -2.2632 -8.6528 27 6 7.6017 -2.1690 -7.2962 28 6 6.4057 -1.7560 -6.6852 29 7 6.2915 -1.6499 -5.3591 30 6 3.5759 -0.5741 -1.3871 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 1.1527 35 1 3.2468 -2.3964 4.2425 36 1 0.5705 -0.4078 -2.8411 37 1 1.4990 1.0621 -2.3978 38 1 2.2956 -1.2444 -4.1650 39 1 2.8207 0.4612 -4.2281 40 1 4.5394 -1.3166 -9.5187 41 1 6.6394 -2.0384 -10.5208 42 1 8.5852 -2.5803 -9.1212 43 1 8.4648 -2.4102 -6.6935 44 1 3.8942 0.4127 -1.0513 45 1 4.0842 -1.3519 -0.8171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501059118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:59 Heat of formation + Delta-G solvation = 91.465110 kcal Electronic energy + Delta-G solvation = -28644.882885 eV Core-core repulsion = 24664.229517 eV Total energy + Delta-G solvation = -3980.653369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44666 -40.00422 -38.53250 -37.76495 -35.68801 -35.16160 -32.86873 -32.21799 -31.47601 -30.47210 -28.71695 -28.21330 -26.74018 -26.01998 -23.95338 -23.43865 -23.08368 -21.50469 -20.72846 -19.74445 -19.60220 -18.95403 -17.44258 -16.96056 -16.68428 -16.50456 -15.94114 -15.56248 -15.40911 -14.83416 -14.74577 -14.24836 -13.78566 -13.65263 -13.45267 -13.17356 -13.07287 -12.85240 -12.73046 -12.62771 -12.54856 -12.34521 -12.21732 -11.97552 -11.94533 -11.37403 -11.28860 -10.83329 -10.72171 -10.53596 -10.49992 -10.25168 -10.19250 -10.11549 -9.86895 -9.70559 -9.57283 -9.30466 -8.86677 -8.54608 -6.92096 -5.71413 -3.00390 -0.76710 -0.34845 1.11659 1.85496 2.41429 2.77347 3.04845 3.37472 3.42914 3.47825 3.52293 3.53287 3.62561 3.91779 4.11813 4.36416 4.47127 4.57939 4.62297 4.80010 4.92235 4.95463 5.12057 5.15810 5.30130 5.36050 5.47241 5.59852 5.60288 5.64779 5.82776 5.89830 5.93696 5.98086 6.00964 6.16539 6.20111 6.28183 6.30467 6.43491 6.46012 6.58335 6.67681 6.89550 7.11483 7.43157 7.73897 7.74128 8.02997 8.46695 9.57924 10.14933 10.49336 11.51044 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.002217 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.461153 B =12624.650511 C =13602.712664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.126 4.126 16 C 0.109 3.891 17 N -0.594 5.594 18 C 0.594 3.406 19 O -0.499 6.499 20 C 0.227 3.773 21 N -0.228 5.228 22 N -0.143 5.143 23 C 0.018 3.982 24 C -0.067 4.067 25 C -0.091 4.091 26 C -0.073 4.073 27 C -0.086 4.086 28 C 0.133 3.867 29 N -0.395 5.395 30 C 0.120 3.880 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.077 0.923 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 0.636 -30.976 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.013 4.013 17 N -0.328 5.328 18 C 0.375 3.625 19 O -0.370 6.370 20 C -0.045 4.045 21 N -0.089 5.089 22 N -0.007 5.007 23 C -0.115 4.115 24 C -0.089 4.089 25 C -0.112 4.112 26 C -0.095 4.095 27 C -0.105 4.105 28 C -0.006 4.006 29 N -0.117 5.117 30 C 0.000 4.000 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.170 0.830 44 H 0.095 0.905 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.369 0.855 -29.862 30.192 hybrid contribution 0.862 -0.137 0.475 0.993 sum 5.231 0.719 -29.387 29.858 Atomic orbital electron populations 1.22438 0.99005 1.00918 1.00024 1.20152 0.91975 0.95169 0.85258 0.93231 1.42426 1.78180 1.10716 1.05267 1.19156 1.36675 0.93784 0.87293 0.91268 1.24732 1.02192 0.95953 0.98023 1.69646 1.50770 1.08617 1.28962 0.86298 0.77694 0.78632 0.83728 1.21369 1.21781 1.21305 1.22689 0.93223 1.00979 0.95270 0.89871 1.22763 0.97882 1.01508 0.94347 1.22240 0.83780 1.01045 0.94284 1.48365 1.10777 1.64027 1.09607 1.16536 0.82933 0.79669 0.83358 1.90866 1.37587 1.48767 1.59801 1.24446 0.87082 0.95098 0.97912 1.74274 1.24979 1.10571 0.99120 1.74519 1.19602 1.04035 1.02503 1.21013 0.93096 1.00079 0.97290 1.20824 0.99333 0.97698 0.91035 1.21252 0.92148 0.96369 1.01404 1.21273 0.99405 0.95738 0.93110 1.20966 0.96085 0.98358 0.95105 1.19780 0.95288 0.96155 0.89418 1.69118 1.23674 1.07737 1.11190 1.22426 0.96475 1.03190 0.77951 0.93503 0.94258 0.92802 0.78260 0.93491 0.89846 0.90320 0.90624 0.90781 0.83103 0.83689 0.83616 0.82986 0.90454 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.27 37.16 0.34 -2.45 16 2 C 0.18 3.47 2.43 -67.94 -0.16 3.30 16 3 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 4 N -0.72 -17.65 4.97 -53.43 -0.27 -17.92 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 9 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C -0.10 -1.60 2.65 -88.47 -0.23 -1.84 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -1.53 5.29 -24.89 -0.13 -1.66 16 16 C 0.11 1.38 5.38 -3.06 -0.02 1.36 16 17 N -0.59 -9.41 3.33 -171.42 -0.57 -9.98 16 18 C 0.59 10.40 7.88 -12.06 -0.10 10.30 16 19 O -0.50 -10.46 17.12 5.38 0.09 -10.36 16 20 C 0.23 3.48 7.62 -156.56 -1.19 2.29 16 21 N -0.23 -3.10 7.99 32.10 0.26 -2.84 16 22 N -0.14 -1.72 11.68 32.28 0.38 -1.34 16 23 C 0.02 0.18 6.68 -84.71 -0.57 -0.38 16 24 C -0.07 -0.40 10.00 -39.53 -0.40 -0.79 16 25 C -0.09 -0.32 9.95 -39.87 -0.40 -0.71 16 26 C -0.07 -0.29 9.95 -39.89 -0.40 -0.68 16 27 C -0.09 -0.63 10.01 -39.48 -0.40 -1.02 16 28 C 0.13 1.48 6.61 -84.77 -0.56 0.92 16 29 N -0.39 -5.83 10.22 -8.99 -0.09 -5.92 16 30 C 0.12 2.09 6.23 -2.53 -0.02 2.07 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.54 7.28 -51.93 -0.38 0.16 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.08 0.92 7.39 -51.93 -0.38 0.54 16 39 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 40 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 42 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 43 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 45 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -34.79 377.59 -9.34 -44.13 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.06 Total: 4.98 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -4.46 Total: 3.58 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.43 Total: -65.63 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.79 -9.34 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.595 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds