Wall clock time and date at job start Wed Apr 1 2020 00:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09001 * 110.88696 * 296.12217 * 13 2 1 15 15 C 1.55164 * 111.00379 * 60.00011 * 13 2 1 16 16 C 1.54324 * 102.94265 * 153.57706 * 15 13 2 17 17 N 1.47023 * 107.27096 * 337.80756 * 16 15 13 18 18 C 1.34781 * 125.64610 * 178.98743 * 17 16 15 19 19 O 1.21479 * 119.99771 * 179.97438 * 18 17 16 20 20 C 1.48435 * 120.00163 * 359.97391 * 18 17 16 21 21 N 1.33492 * 119.21640 * 359.72961 * 20 18 17 22 22 N 1.28922 * 122.01815 * 179.73923 * 21 20 18 23 23 C 1.33805 * 119.74518 * 0.52706 * 22 21 20 24 24 C 1.40339 * 121.78091 * 179.74575 * 23 22 21 25 25 C 1.36188 * 119.62889 * 180.02562 * 24 23 22 26 26 C 1.39441 * 121.06944 * 359.97438 * 25 24 23 27 27 C 1.36139 * 121.01609 * 359.97438 * 26 25 24 28 28 C 1.40510 * 119.56106 * 0.02562 * 27 26 25 29 29 N 1.32059 * 119.21935 * 180.02562 * 20 18 17 30 30 C 1.47420 * 108.70349 * 358.94221 * 17 16 15 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 35 35 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71706 * 271.94403 * 15 13 2 37 37 H 1.09003 * 110.71915 * 35.21610 * 15 13 2 38 38 H 1.08998 * 109.88103 * 97.22689 * 16 15 13 39 39 H 1.08999 * 109.88115 * 218.38900 * 16 15 13 40 40 H 1.08003 * 120.18426 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.46520 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.49570 * 180.02562 * 26 25 24 43 43 H 1.07991 * 120.22342 * 180.02562 * 27 26 25 44 44 H 1.08998 * 110.36515 * 265.28538 * 30 17 16 45 45 H 1.09000 * 110.36924 * 142.96936 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 1.7469 -1.7710 -1.2387 15 6 1.5426 -0.0178 -2.5396 16 6 2.6251 -0.3893 -3.5749 17 7 3.8428 -0.7365 -2.8278 18 6 5.0100 -1.1362 -3.3704 19 8 5.9550 -1.3979 -2.6533 20 6 5.1409 -1.2565 -4.8441 21 7 4.0908 -0.9702 -5.6170 22 7 4.1458 -1.0515 -6.9025 23 6 5.2798 -1.4433 -7.4949 24 6 5.3856 -1.5518 -8.8901 25 6 6.5611 -1.9554 -9.4469 26 6 7.6652 -2.2632 -8.6528 27 6 7.6017 -2.1690 -7.2962 28 6 6.4057 -1.7560 -6.6852 29 7 6.2915 -1.6499 -5.3591 30 6 3.5759 -0.5741 -1.3871 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 1.1527 35 1 3.2468 -2.3964 4.2425 36 1 0.5705 -0.4078 -2.8411 37 1 1.4990 1.0621 -2.3978 38 1 2.2956 -1.2444 -4.1650 39 1 2.8207 0.4612 -4.2281 40 1 4.5394 -1.3166 -9.5187 41 1 6.6394 -2.0384 -10.5208 42 1 8.5852 -2.5803 -9.1212 43 1 8.4648 -2.4102 -6.6935 44 1 3.8942 0.4127 -1.0513 45 1 4.0842 -1.3519 -0.8171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501059118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:59 Heat of formation + Delta-G solvation = 66.882624 kcal Electronic energy + Delta-G solvation = -28645.948862 eV Core-core repulsion = 24664.229517 eV Total energy + Delta-G solvation = -3981.719345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.26754 -41.24384 -39.35688 -38.96491 -36.91468 -36.45228 -34.41640 -33.31885 -32.19955 -31.85631 -30.05290 -29.78832 -27.60843 -26.87791 -25.88850 -24.61841 -23.67748 -22.91766 -21.74024 -21.08559 -20.54684 -19.87302 -19.11731 -18.26246 -17.66056 -17.47662 -17.15699 -16.72188 -16.39693 -16.01261 -15.73390 -15.43882 -15.33573 -15.15636 -14.57333 -14.26687 -14.17406 -14.07787 -13.69870 -13.68612 -13.56175 -13.42249 -13.19833 -13.12889 -13.09316 -12.85263 -12.70559 -12.45946 -12.30755 -12.23715 -12.00298 -11.72293 -11.53248 -11.51347 -11.34236 -10.91018 -10.75719 -10.64230 -9.96824 -9.76485 -8.96899 -7.90441 -5.17858 -1.49129 -1.13931 0.48949 0.99071 1.26585 1.46757 1.49965 1.55504 1.83382 2.19678 2.55189 2.58420 2.63460 2.76449 3.18270 3.41617 3.46371 3.63232 3.66798 3.73823 3.85033 3.96211 4.16859 4.17733 4.32682 4.38697 4.44305 4.55679 4.66117 4.67878 4.72238 4.79334 4.87476 4.93269 4.98160 5.00817 5.05603 5.13838 5.16858 5.21755 5.32569 5.43222 5.50006 5.55902 5.63948 5.67771 6.16916 6.31641 6.63075 6.93811 7.37408 8.15419 8.36562 9.33072 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.002217 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.461153 B =12624.650511 C =13602.712664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.969 3.031 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.281 1.281 13 C -0.091 4.091 14 H 0.077 0.923 15 C -0.112 4.112 16 C 0.112 3.888 17 N -0.591 5.591 18 C 0.588 3.412 19 O -0.553 6.553 20 C 0.203 3.797 21 N -0.238 5.238 22 N -0.156 5.156 23 C 0.012 3.988 24 C -0.076 4.076 25 C -0.061 4.061 26 C -0.038 4.038 27 C -0.112 4.112 28 C 0.112 3.888 29 N -0.431 5.431 30 C 0.123 3.877 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.176 0.824 41 H 0.196 0.804 42 H 0.192 0.808 43 H 0.154 0.846 44 H 0.068 0.932 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 1.597 -35.992 36.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.067 0.933 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.798 3.202 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.207 1.207 13 C -0.111 4.111 14 H 0.096 0.904 15 C -0.150 4.150 16 C -0.010 4.010 17 N -0.323 5.323 18 C 0.372 3.628 19 O -0.429 6.429 20 C -0.069 4.069 21 N -0.099 5.099 22 N -0.017 5.017 23 C -0.122 4.122 24 C -0.098 4.098 25 C -0.082 4.082 26 C -0.061 4.061 27 C -0.132 4.132 28 C -0.028 4.028 29 N -0.153 5.153 30 C 0.002 3.998 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.193 0.807 41 H 0.214 0.786 42 H 0.209 0.791 43 H 0.172 0.828 44 H 0.086 0.914 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.795 1.879 -34.925 35.181 hybrid contribution 1.172 -0.469 1.611 2.047 sum 4.967 1.410 -33.314 33.711 Atomic orbital electron populations 1.22272 0.96721 1.01024 1.01213 1.20409 0.93359 0.94788 0.84297 0.93279 1.42665 1.78494 1.10251 1.06382 1.19572 1.34292 0.94132 0.88220 0.90463 1.25530 1.03444 0.96859 1.01468 1.69819 1.52979 1.10255 1.29263 0.85275 0.77951 0.77236 0.79714 1.20191 1.22658 1.20717 1.22508 0.91737 1.00878 0.96001 0.90447 1.22803 0.98770 1.02123 0.91271 1.22417 0.82370 1.01863 0.94320 1.48420 1.11497 1.63260 1.09126 1.16988 0.82534 0.78699 0.84587 1.90805 1.39335 1.51271 1.61446 1.23767 0.88372 0.98233 0.96526 1.74171 1.24205 1.11690 0.99809 1.74386 1.20791 1.04795 1.01741 1.21525 0.92022 0.99560 0.99069 1.21264 1.01524 0.98013 0.88975 1.21912 0.90285 0.92189 1.03769 1.21896 1.01165 0.91605 0.91409 1.21227 0.95007 0.99986 0.96931 1.20363 0.97236 0.96860 0.88298 1.68989 1.23925 1.08811 1.13608 1.22221 0.97596 1.01143 0.78876 0.93943 0.89930 0.94663 0.79868 0.94349 0.86797 0.88736 0.89860 0.89515 0.80673 0.78648 0.79110 0.82788 0.91394 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.27 71.98 0.67 -4.28 16 2 C 0.18 6.74 2.43 44.99 0.11 6.84 16 3 H 0.05 1.86 8.01 -2.39 -0.02 1.84 16 4 N -0.74 -37.16 4.97 -322.95 -1.61 -38.76 16 5 C -0.23 -12.87 9.93 84.03 0.83 -12.03 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 8 N -0.97 -61.69 13.06 21.65 0.28 -61.41 16 9 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 13 C -0.09 -2.90 2.65 -9.40 -0.02 -2.93 16 14 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 15 C -0.11 -2.46 5.29 31.79 0.17 -2.29 16 16 C 0.11 2.77 5.38 86.73 0.47 3.24 16 17 N -0.59 -19.93 3.33 -814.54 -2.71 -22.64 16 18 C 0.59 22.59 7.88 86.96 0.69 23.28 16 19 O -0.55 -25.77 17.12 -3.65 -0.06 -25.83 16 20 C 0.20 6.69 7.62 137.46 1.05 7.74 16 21 N -0.24 -6.67 7.99 -52.35 -0.42 -7.09 16 22 N -0.16 -3.68 11.68 -51.80 -0.60 -4.28 16 23 C 0.01 0.23 6.68 40.33 0.27 0.50 16 24 C -0.08 -0.59 10.00 22.30 0.22 -0.37 16 25 C -0.06 -0.05 9.95 22.08 0.22 0.17 16 26 C -0.04 -0.11 9.95 22.07 0.22 0.11 16 27 C -0.11 -1.44 10.01 22.33 0.22 -1.21 16 28 C 0.11 2.50 6.61 40.42 0.27 2.76 16 29 N -0.43 -13.66 10.22 -182.36 -1.86 -15.53 16 30 C 0.12 4.61 6.23 86.86 0.54 5.15 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.97 7.28 -2.39 -0.02 1.95 16 33 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.37 20.46 7.80 -92.70 -0.72 19.74 16 35 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.11 1.92 8.11 -2.39 -0.02 1.90 16 37 H 0.09 1.85 8.04 -2.39 -0.02 1.83 16 38 H 0.08 1.98 7.39 -2.39 -0.02 1.96 16 39 H 0.09 1.98 7.52 -2.39 -0.02 1.97 16 40 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 41 H 0.20 -1.59 8.06 -2.91 -0.02 -1.62 16 42 H 0.19 -1.07 8.06 -2.91 -0.02 -1.10 16 43 H 0.15 1.83 8.06 -2.92 -0.02 1.81 16 44 H 0.07 2.61 7.98 -2.39 -0.02 2.60 16 45 H 0.05 2.18 8.04 -2.39 -0.02 2.16 16 Total: -1.00 -85.01 377.59 1.73 -83.28 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.30 Total: 20.18 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 6.38 Total: 22.35 kcal Atomic # 7 Polarization: -142.79 SS G_CDS: -6.92 Total: -149.71 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.83 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -85.01 1.73 -83.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.164 kcal (2) G-P(sol) polarization free energy of solvation -85.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds