Wall clock time and date at job start Wed Apr 1 2020 00:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47144 * 90.00258 * 9 7 5 11 11 H 1.48500 * 109.47140 * 210.00775 * 9 7 5 12 12 H 1.48502 * 109.46967 * 330.00206 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09005 * 110.88719 * 60.70330 * 13 2 1 15 15 C 1.55161 * 111.00639 * 296.82167 * 13 2 1 16 16 C 1.54370 * 102.92205 * 206.45309 * 15 13 2 17 17 N 1.47026 * 107.28745 * 22.14001 * 16 15 13 18 18 C 1.34773 * 125.64682 * 181.12986 * 17 16 15 19 19 O 1.21483 * 120.00067 * 179.97438 * 18 17 16 20 20 C 1.48438 * 120.00193 * 359.95234 * 18 17 16 21 21 N 1.33492 * 119.21741 * 359.73790 * 20 18 17 22 22 N 1.28917 * 122.02153 * 179.73572 * 21 20 18 23 23 C 1.33818 * 119.74357 * 0.52507 * 22 21 20 24 24 C 1.40338 * 121.77742 * 179.74716 * 23 22 21 25 25 C 1.36186 * 119.62141 * 180.02562 * 24 23 22 26 26 C 1.39447 * 121.07651 * 359.97438 * 25 24 23 27 27 C 1.36137 * 121.00698 * 359.97438 * 26 25 24 28 28 C 1.40510 * 119.56684 * 0.02562 * 27 26 25 29 29 N 1.32064 * 119.21897 * 179.97438 * 20 18 17 30 30 C 1.47419 * 108.70268 * 1.09179 * 17 16 15 31 31 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 32 32 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 34 34 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 35 35 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.71909 * 324.78931 * 15 13 2 37 37 H 1.08994 * 110.71797 * 88.05692 * 15 13 2 38 38 H 1.09003 * 109.84627 * 262.73333 * 16 15 13 39 39 H 1.09005 * 110.02931 * 141.64839 * 16 15 13 40 40 H 1.07994 * 120.18726 * 359.97438 * 24 23 22 41 41 H 1.08006 * 119.46368 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.49697 * 179.97438 * 26 25 24 43 43 H 1.08006 * 120.21489 * 180.02562 * 27 26 25 44 44 H 1.09006 * 110.36889 * 217.03566 * 30 17 16 45 45 H 1.09000 * 110.36880 * 94.70923 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.9355 -1.9363 -3.4471 9 14 2.8079 0.2744 -5.1136 10 1 4.1701 0.8604 -5.1916 11 1 2.6031 -0.6560 -6.2527 12 1 1.7974 1.3609 -5.1741 13 6 2.0399 -0.7212 1.2493 14 1 1.6996 -1.7566 1.2665 15 6 1.6091 0.0272 2.5384 16 6 2.7018 -0.3743 3.5522 17 7 3.8819 -0.7909 2.7806 18 6 5.0432 -1.2355 3.3002 19 8 5.9555 -1.5543 2.5640 20 6 5.2079 -1.3353 4.7720 21 7 4.1973 -0.9755 5.5666 22 7 4.2797 -1.0450 6.8513 23 6 5.4097 -1.4792 7.4215 24 6 5.5478 -1.5669 8.8154 25 6 6.7181 -2.0146 9.3490 26 6 7.7847 -2.3891 8.5326 27 6 7.6882 -2.3190 7.1765 28 6 6.4965 -1.8619 6.5889 29 7 6.3522 -1.7735 5.2645 30 6 3.5842 -0.6426 1.3444 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2491 -1.6318 -1.1525 35 1 3.2623 -2.3926 -4.2382 36 1 1.6104 1.1052 2.3771 37 1 0.6288 -0.3126 2.8722 38 1 2.3496 -1.2026 4.1672 39 1 2.9543 0.4762 4.1855 40 1 4.7310 -1.2802 9.4611 41 1 6.8217 -2.0807 10.4220 42 1 8.7014 -2.7402 8.9830 43 1 8.5223 -2.6127 6.5563 44 1 4.0409 -1.4532 0.7765 45 1 3.9379 0.3224 0.9813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501059126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:02 Heat of formation + Delta-G solvation = 91.288010 kcal Electronic energy + Delta-G solvation = -28659.303663 eV Core-core repulsion = 24678.642615 eV Total energy + Delta-G solvation = -3980.661048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44325 -39.99678 -38.52868 -37.75674 -35.68450 -35.15923 -32.86354 -32.21471 -31.47320 -30.47458 -28.69903 -28.22391 -26.73785 -26.01814 -23.94175 -23.44760 -23.08162 -21.48999 -20.73055 -19.74323 -19.59910 -18.95570 -17.44340 -16.95958 -16.67740 -16.50181 -15.93119 -15.55775 -15.40126 -14.83117 -14.74085 -14.25377 -13.78125 -13.64919 -13.45435 -13.17289 -13.07277 -12.85386 -12.72156 -12.62008 -12.54551 -12.33604 -12.21669 -11.96736 -11.94899 -11.39006 -11.27424 -10.84606 -10.71870 -10.52961 -10.50395 -10.24829 -10.17819 -10.11078 -9.86179 -9.70158 -9.57455 -9.30202 -8.87297 -8.53775 -6.92097 -5.71638 -3.00600 -0.76403 -0.34512 1.11924 1.85872 2.41994 2.77850 3.05192 3.37777 3.43292 3.47454 3.52295 3.53988 3.63004 3.92099 4.12049 4.36679 4.47418 4.58161 4.62150 4.80196 4.92483 4.95769 5.11983 5.16068 5.30411 5.36283 5.47566 5.60101 5.60356 5.65339 5.83199 5.90093 5.93753 5.98047 6.00908 6.17179 6.20212 6.28603 6.31686 6.42951 6.46364 6.59349 6.67542 6.89280 7.11436 7.43869 7.74283 7.74525 8.03693 8.46458 9.57796 10.14743 10.49162 11.50874 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.002233 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.624319 B =12536.804991 C =13533.287349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.126 4.126 16 C 0.109 3.891 17 N -0.594 5.594 18 C 0.593 3.407 19 O -0.498 6.498 20 C 0.227 3.773 21 N -0.228 5.228 22 N -0.143 5.143 23 C 0.018 3.982 24 C -0.067 4.067 25 C -0.091 4.091 26 C -0.073 4.073 27 C -0.086 4.086 28 C 0.133 3.867 29 N -0.395 5.395 30 C 0.121 3.879 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.088 0.912 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 0.612 30.806 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.013 4.013 17 N -0.328 5.328 18 C 0.375 3.625 19 O -0.370 6.370 20 C -0.045 4.045 21 N -0.090 5.090 22 N -0.007 5.007 23 C -0.115 4.115 24 C -0.089 4.089 25 C -0.112 4.112 26 C -0.095 4.095 27 C -0.105 4.105 28 C -0.006 4.006 29 N -0.117 5.117 30 C 0.000 4.000 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.170 0.830 44 H 0.107 0.893 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.641 0.835 29.696 30.068 hybrid contribution 0.883 -0.173 -0.485 1.022 sum 5.524 0.662 29.211 29.736 Atomic orbital electron populations 1.22429 0.98992 1.00914 1.00020 1.20158 0.91990 0.95165 0.85245 0.93218 1.42430 1.78151 1.10656 1.05370 1.19199 1.36411 0.93809 0.87421 0.91213 1.24734 1.02188 0.95960 0.98053 1.69660 1.50719 1.08639 1.28937 0.86223 0.77772 0.78580 0.83803 1.21766 1.21885 1.20842 1.22697 0.93410 1.00770 0.95330 0.89917 1.22763 0.97922 1.01258 0.94539 1.22244 0.84710 1.00423 0.93970 1.48364 1.12585 1.62234 1.09598 1.16535 0.82714 0.79800 0.83465 1.90869 1.39522 1.48112 1.58486 1.24453 0.87427 0.94778 0.97875 1.74271 1.25002 1.11008 0.98669 1.74522 1.18297 1.04748 1.03099 1.21014 0.93392 0.99832 0.97248 1.20821 0.99051 0.97804 0.91214 1.21253 0.92330 0.96209 1.01385 1.21275 0.99437 0.95851 0.92970 1.20968 0.95865 0.98331 0.95350 1.19778 0.95460 0.96086 0.89317 1.69124 1.22098 1.08541 1.11947 1.22419 0.96024 1.03420 0.78129 0.92791 0.93504 0.94280 0.78257 0.93546 0.90320 0.89857 0.90690 0.90741 0.83106 0.83693 0.83614 0.82984 0.89336 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.31 37.16 0.35 -2.44 16 2 C 0.18 3.46 2.40 -67.93 -0.16 3.30 16 3 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 4 N -0.72 -17.64 4.90 -53.43 -0.26 -17.90 16 5 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 9 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C -0.10 -1.61 2.64 -88.47 -0.23 -1.84 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.13 -1.53 5.44 -24.87 -0.14 -1.66 16 16 C 0.11 1.38 5.39 -3.04 -0.02 1.37 16 17 N -0.59 -9.46 3.33 -171.37 -0.57 -10.03 16 18 C 0.59 10.44 7.88 -12.06 -0.10 10.35 16 19 O -0.50 -10.51 17.12 5.38 0.09 -10.41 16 20 C 0.23 3.49 7.62 -156.56 -1.19 2.30 16 21 N -0.23 -3.11 7.99 32.10 0.26 -2.85 16 22 N -0.14 -1.72 11.68 32.28 0.38 -1.34 16 23 C 0.02 0.18 6.68 -84.71 -0.57 -0.38 16 24 C -0.07 -0.40 10.00 -39.53 -0.40 -0.79 16 25 C -0.09 -0.32 9.95 -39.87 -0.40 -0.72 16 26 C -0.07 -0.29 9.95 -39.89 -0.40 -0.69 16 27 C -0.09 -0.63 10.01 -39.48 -0.40 -1.02 16 28 C 0.13 1.49 6.61 -84.77 -0.56 0.93 16 29 N -0.39 -5.85 10.22 -8.99 -0.09 -5.94 16 30 C 0.12 2.11 6.16 -2.53 -0.02 2.09 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.54 7.38 -51.93 -0.38 0.15 16 34 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 35 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 37 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 38 H 0.07 0.92 7.40 -51.93 -0.38 0.53 16 39 H 0.07 0.89 7.50 -51.93 -0.39 0.50 16 40 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.15 0.04 8.06 -52.48 -0.42 -0.39 16 42 H 0.15 0.12 8.06 -52.49 -0.42 -0.31 16 43 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 44 H 0.09 1.79 8.04 -51.93 -0.42 1.37 16 45 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -34.82 377.80 -9.34 -44.16 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.07 Total: 4.97 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -4.46 Total: 3.67 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: 0.43 Total: -65.69 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.82 -9.34 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.450 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds