Wall clock time and date at job start Wed Apr 1 2020 00:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47144 * 90.00258 * 9 7 5 11 11 H 1.48500 * 109.47140 * 210.00775 * 9 7 5 12 12 H 1.48502 * 109.46967 * 330.00206 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09005 * 110.88719 * 60.70330 * 13 2 1 15 15 C 1.55161 * 111.00639 * 296.82167 * 13 2 1 16 16 C 1.54370 * 102.92205 * 206.45309 * 15 13 2 17 17 N 1.47026 * 107.28745 * 22.14001 * 16 15 13 18 18 C 1.34773 * 125.64682 * 181.12986 * 17 16 15 19 19 O 1.21483 * 120.00067 * 179.97438 * 18 17 16 20 20 C 1.48438 * 120.00193 * 359.95234 * 18 17 16 21 21 N 1.33492 * 119.21741 * 359.73790 * 20 18 17 22 22 N 1.28917 * 122.02153 * 179.73572 * 21 20 18 23 23 C 1.33818 * 119.74357 * 0.52507 * 22 21 20 24 24 C 1.40338 * 121.77742 * 179.74716 * 23 22 21 25 25 C 1.36186 * 119.62141 * 180.02562 * 24 23 22 26 26 C 1.39447 * 121.07651 * 359.97438 * 25 24 23 27 27 C 1.36137 * 121.00698 * 359.97438 * 26 25 24 28 28 C 1.40510 * 119.56684 * 0.02562 * 27 26 25 29 29 N 1.32064 * 119.21897 * 179.97438 * 20 18 17 30 30 C 1.47419 * 108.70268 * 1.09179 * 17 16 15 31 31 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 32 32 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 34 34 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 35 35 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.71909 * 324.78931 * 15 13 2 37 37 H 1.08994 * 110.71797 * 88.05692 * 15 13 2 38 38 H 1.09003 * 109.84627 * 262.73333 * 16 15 13 39 39 H 1.09005 * 110.02931 * 141.64839 * 16 15 13 40 40 H 1.07994 * 120.18726 * 359.97438 * 24 23 22 41 41 H 1.08006 * 119.46368 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.49697 * 179.97438 * 26 25 24 43 43 H 1.08006 * 120.21489 * 180.02562 * 27 26 25 44 44 H 1.09006 * 110.36889 * 217.03566 * 30 17 16 45 45 H 1.09000 * 110.36880 * 94.70923 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.9355 -1.9363 -3.4471 9 14 2.8079 0.2744 -5.1136 10 1 4.1701 0.8604 -5.1916 11 1 2.6031 -0.6560 -6.2527 12 1 1.7974 1.3609 -5.1741 13 6 2.0399 -0.7212 1.2493 14 1 1.6996 -1.7566 1.2665 15 6 1.6091 0.0272 2.5384 16 6 2.7018 -0.3743 3.5522 17 7 3.8819 -0.7909 2.7806 18 6 5.0432 -1.2355 3.3002 19 8 5.9555 -1.5543 2.5640 20 6 5.2079 -1.3353 4.7720 21 7 4.1973 -0.9755 5.5666 22 7 4.2797 -1.0450 6.8513 23 6 5.4097 -1.4792 7.4215 24 6 5.5478 -1.5669 8.8154 25 6 6.7181 -2.0146 9.3490 26 6 7.7847 -2.3891 8.5326 27 6 7.6882 -2.3190 7.1765 28 6 6.4965 -1.8619 6.5889 29 7 6.3522 -1.7735 5.2645 30 6 3.5842 -0.6426 1.3444 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2491 -1.6318 -1.1525 35 1 3.2623 -2.3926 -4.2382 36 1 1.6104 1.1052 2.3771 37 1 0.6288 -0.3126 2.8722 38 1 2.3496 -1.2026 4.1672 39 1 2.9543 0.4762 4.1855 40 1 4.7310 -1.2802 9.4611 41 1 6.8217 -2.0807 10.4220 42 1 8.7014 -2.7402 8.9830 43 1 8.5223 -2.6127 6.5563 44 1 4.0409 -1.4532 0.7765 45 1 3.9379 0.3224 0.9813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501059126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:01 Heat of formation + Delta-G solvation = 66.675160 kcal Electronic energy + Delta-G solvation = -28660.370956 eV Core-core repulsion = 24678.642615 eV Total energy + Delta-G solvation = -3981.728341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26792 -41.24200 -39.35431 -38.96424 -36.91427 -36.45244 -34.41333 -33.31925 -32.20031 -31.85618 -30.04778 -29.79548 -27.60970 -26.87950 -25.88130 -24.63155 -23.67820 -22.89923 -21.74640 -21.08853 -20.54683 -19.87922 -19.11996 -18.26342 -17.65546 -17.47605 -17.15285 -16.72183 -16.39804 -16.01170 -15.72804 -15.44052 -15.33585 -15.17263 -14.58436 -14.25976 -14.17330 -14.06841 -13.70068 -13.67883 -13.56074 -13.42761 -13.19817 -13.12242 -13.09084 -12.87847 -12.73585 -12.45778 -12.29971 -12.18013 -12.02254 -11.71121 -11.53124 -11.51675 -11.34476 -10.92487 -10.75736 -10.64291 -9.96852 -9.76473 -8.96984 -7.90704 -5.18085 -1.49177 -1.13967 0.48900 0.99059 1.26579 1.46640 1.48748 1.56407 1.83335 2.19642 2.55164 2.58172 2.63410 2.76442 3.18203 3.41666 3.46258 3.62993 3.66624 3.73697 3.85420 3.96160 4.17064 4.17771 4.32803 4.38645 4.44373 4.55554 4.65795 4.67874 4.72376 4.79328 4.87947 4.93299 4.98533 5.00711 5.05520 5.13717 5.16816 5.21939 5.32819 5.42992 5.49992 5.56054 5.63921 5.67837 6.17024 6.31543 6.63148 6.93743 7.37275 8.15218 8.36307 9.33026 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.002233 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.624319 B =12536.804991 C =13533.287349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 H 0.050 0.950 4 N -0.738 5.738 5 C -0.228 4.228 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.968 3.032 10 H -0.292 1.292 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.091 4.091 14 H 0.078 0.922 15 C -0.111 4.111 16 C 0.111 3.889 17 N -0.591 5.591 18 C 0.588 3.412 19 O -0.553 6.553 20 C 0.203 3.797 21 N -0.238 5.238 22 N -0.156 5.156 23 C 0.012 3.988 24 C -0.076 4.076 25 C -0.061 4.061 26 C -0.038 4.038 27 C -0.112 4.112 28 C 0.111 3.889 29 N -0.431 5.431 30 C 0.124 3.876 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.176 0.824 41 H 0.196 0.804 42 H 0.192 0.808 43 H 0.154 0.846 44 H 0.048 0.952 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 1.650 35.860 36.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.068 0.932 4 N -0.378 5.378 5 C -0.360 4.360 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.623 5.623 9 Si 0.798 3.202 10 H -0.220 1.220 11 H -0.226 1.226 12 H -0.191 1.191 13 C -0.111 4.111 14 H 0.096 0.904 15 C -0.149 4.149 16 C -0.010 4.010 17 N -0.323 5.323 18 C 0.372 3.628 19 O -0.429 6.429 20 C -0.069 4.069 21 N -0.099 5.099 22 N -0.017 5.017 23 C -0.122 4.122 24 C -0.098 4.098 25 C -0.082 4.082 26 C -0.061 4.061 27 C -0.132 4.132 28 C -0.028 4.028 29 N -0.153 5.153 30 C 0.002 3.998 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.193 0.807 41 H 0.214 0.786 42 H 0.209 0.791 43 H 0.172 0.828 44 H 0.067 0.933 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.122 1.940 34.799 35.096 hybrid contribution 1.183 -0.532 -1.635 2.087 sum 5.304 1.408 33.164 33.616 Atomic orbital electron populations 1.22264 0.96714 1.01011 1.01217 1.20419 0.93367 0.94803 0.84274 0.93222 1.42672 1.78438 1.10193 1.06498 1.19608 1.33974 0.94134 0.88325 0.90410 1.25531 1.03469 0.96866 1.01494 1.69831 1.52947 1.10296 1.29268 0.85204 0.77724 0.77516 0.79754 1.21994 1.22578 1.19098 1.22520 0.91687 1.00877 0.96065 0.90358 1.22803 0.98953 1.01657 0.91524 1.22426 0.83431 1.01170 0.93958 1.48420 1.13214 1.61521 1.09147 1.16992 0.82315 0.78835 0.84690 1.90808 1.41288 1.50614 1.60172 1.23766 0.88779 0.97867 0.96480 1.74167 1.24339 1.12035 0.99324 1.74388 1.19489 1.05522 1.02303 1.21526 0.92326 0.99288 0.99033 1.21262 1.01155 0.98186 0.89164 1.21914 0.90377 0.92093 1.03771 1.21897 1.01015 0.91909 0.91248 1.21229 0.94837 0.99878 0.97218 1.20361 0.97370 0.96845 0.88188 1.68993 1.22353 1.09594 1.14400 1.22205 0.97362 1.01144 0.79056 0.94634 0.93965 0.89954 0.79875 0.94372 0.88800 0.86718 0.89872 0.89513 0.80663 0.78642 0.79107 0.82797 0.93346 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.31 71.98 0.67 -4.26 16 2 C 0.18 6.72 2.40 44.99 0.11 6.83 16 3 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 4 N -0.74 -37.13 4.90 -322.94 -1.58 -38.71 16 5 C -0.23 -12.76 9.93 84.03 0.83 -11.92 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 8 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 9 Si 0.97 47.75 29.55 68.60 2.03 49.78 16 10 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 11 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 C -0.09 -2.91 2.64 -9.40 -0.02 -2.93 16 14 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 15 C -0.11 -2.45 5.44 31.80 0.17 -2.28 16 16 C 0.11 2.77 5.39 86.74 0.47 3.24 16 17 N -0.59 -20.05 3.33 -814.41 -2.71 -22.75 16 18 C 0.59 22.71 7.88 86.96 0.69 23.39 16 19 O -0.55 -25.95 17.12 -3.66 -0.06 -26.01 16 20 C 0.20 6.72 7.62 137.46 1.05 7.77 16 21 N -0.24 -6.68 7.99 -52.34 -0.42 -7.10 16 22 N -0.16 -3.68 11.68 -51.80 -0.61 -4.29 16 23 C 0.01 0.23 6.68 40.32 0.27 0.50 16 24 C -0.08 -0.60 10.00 22.30 0.22 -0.37 16 25 C -0.06 -0.06 9.95 22.08 0.22 0.16 16 26 C -0.04 -0.11 9.95 22.07 0.22 0.11 16 27 C -0.11 -1.45 10.01 22.33 0.22 -1.23 16 28 C 0.11 2.50 6.61 40.41 0.27 2.77 16 29 N -0.43 -13.72 10.22 -182.37 -1.86 -15.59 16 30 C 0.12 4.67 6.16 86.86 0.54 5.20 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.96 7.38 -2.39 -0.02 1.94 16 34 H 0.37 20.47 7.80 -92.71 -0.72 19.74 16 35 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.09 1.85 8.04 -2.39 -0.02 1.83 16 37 H 0.11 1.91 8.12 -2.39 -0.02 1.89 16 38 H 0.08 1.97 7.40 -2.39 -0.02 1.96 16 39 H 0.09 2.00 7.50 -2.38 -0.02 1.98 16 40 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 41 H 0.20 -1.59 8.06 -2.91 -0.02 -1.61 16 42 H 0.19 -1.06 8.06 -2.91 -0.02 -1.08 16 43 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 44 H 0.05 2.18 8.04 -2.38 -0.02 2.16 16 45 H 0.07 2.61 8.03 -2.39 -0.02 2.59 16 Total: -1.00 -85.24 377.80 1.76 -83.48 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.30 Total: 20.08 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 6.39 Total: 22.63 kcal Atomic # 7 Polarization: -143.06 SS G_CDS: -6.89 Total: -149.95 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.06 Total: -26.01 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -85.24 1.76 -83.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.158 kcal (2) G-P(sol) polarization free energy of solvation -85.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds