Wall clock time and date at job start Wed Apr 1 2020 00:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00056 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00155 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46896 * 90.00225 * 9 7 5 11 11 H 1.48501 * 109.47275 * 210.00265 * 9 7 5 12 12 H 1.48499 * 109.47039 * 330.00065 * 9 7 5 13 13 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 14 14 H 1.09003 * 110.88555 * 179.29709 * 13 2 1 15 15 C 1.55160 * 111.00374 * 303.17602 * 13 2 1 16 16 C 1.54365 * 102.91732 * 153.54491 * 15 13 2 17 17 N 1.47019 * 107.29483 * 337.86631 * 16 15 13 18 18 C 1.34770 * 125.65377 * 178.87258 * 17 16 15 19 19 O 1.21485 * 120.00467 * 180.02562 * 18 17 16 20 20 C 1.48434 * 119.99898 * 0.03825 * 18 17 16 21 21 N 1.33497 * 119.21963 * 359.72971 * 20 18 17 22 22 N 1.28914 * 122.01963 * 179.73807 * 21 20 18 23 23 C 1.33817 * 119.74886 * 0.52532 * 22 21 20 24 24 C 1.40340 * 121.77896 * 179.74112 * 23 22 21 25 25 C 1.36183 * 119.62032 * 180.02562 * 24 23 22 26 26 C 1.39448 * 121.07391 * 0.02562 * 25 24 23 27 27 C 1.36129 * 121.01364 * 359.97108 * 26 25 24 28 28 C 1.40506 * 119.56531 * 0.02943 * 27 26 25 29 29 N 1.32066 * 119.22028 * 179.97438 * 20 18 17 30 30 C 1.47427 * 108.69817 * 358.90490 * 17 16 15 31 31 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 33 33 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 34 34 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 35 35 H 0.97000 * 119.99835 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.71988 * 271.94244 * 15 13 2 37 37 H 1.09006 * 110.71781 * 35.21855 * 15 13 2 38 38 H 1.09005 * 109.90277 * 218.42504 * 16 15 13 39 39 H 1.09002 * 109.97324 * 97.34542 * 16 15 13 40 40 H 1.08000 * 120.18602 * 0.02562 * 24 23 22 41 41 H 1.08004 * 119.46195 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.49225 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.21875 * 180.02562 * 27 26 25 44 44 H 1.09005 * 110.36679 * 265.28986 * 30 17 16 45 45 H 1.09002 * 110.46081 * 143.01961 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.7260 -0.0080 -4.6460 9 14 3.0575 -2.4737 -3.4250 10 1 1.8626 -3.2973 -3.7399 11 1 4.1315 -2.7632 -4.4089 12 1 3.5375 -2.8000 -2.0581 13 6 2.0400 -0.7213 1.2492 14 1 3.1296 -0.7456 1.2662 15 6 1.4780 -0.0657 2.5383 16 6 1.4924 -1.2299 3.5519 17 7 1.4919 -2.4813 2.7803 18 6 1.5239 -3.7244 3.2997 19 8 1.5204 -4.6908 2.5635 20 6 1.5632 -3.9130 4.7715 21 7 1.5718 -2.8403 5.5660 22 7 1.6005 -2.9414 6.8509 23 6 1.6332 -4.1516 7.4210 24 6 1.6706 -4.3112 8.8148 25 6 1.7036 -5.5637 9.3483 26 6 1.7014 -6.6941 8.5317 27 6 1.6657 -6.5797 7.1757 28 6 1.6310 -5.3038 6.5883 29 7 1.5938 -5.1381 5.2639 30 6 1.4512 -2.1509 1.3441 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5140 -0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 3.0494 -0.4652 -5.4379 36 1 2.1253 0.7453 2.8722 37 1 0.4612 0.2923 2.3771 38 1 0.6050 -1.1832 4.1832 39 1 2.3893 -1.1753 4.1690 40 1 1.6731 -3.4455 9.4606 41 1 1.7327 -5.6835 10.4213 42 1 1.7285 -7.6754 8.9820 43 1 1.6641 -7.4638 6.5555 44 1 0.4235 -2.1629 0.9810 45 1 2.0621 -2.8514 0.7746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501059127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:05 Heat of formation + Delta-G solvation = 100.765694 kcal Electronic energy + Delta-G solvation = -28849.750906 eV Core-core repulsion = 24869.500841 eV Total energy + Delta-G solvation = -3980.250065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52246 -40.19206 -38.65144 -37.98236 -35.78077 -35.30540 -32.95317 -32.25711 -31.54017 -30.75745 -29.10856 -28.23442 -26.77187 -26.13367 -24.36163 -23.50134 -23.15450 -21.58071 -21.02947 -19.83576 -19.14341 -18.98862 -17.73531 -17.26408 -16.78686 -16.61401 -16.10984 -15.67177 -15.51108 -14.88119 -14.70093 -14.63025 -14.00222 -13.74463 -13.55880 -13.22338 -13.16843 -13.02446 -12.82381 -12.71792 -12.61162 -12.46288 -12.31064 -12.28859 -12.09524 -11.61498 -11.26366 -10.98085 -10.88992 -10.54550 -10.41005 -10.36380 -10.24675 -10.16821 -9.93813 -9.78118 -9.55163 -9.37017 -8.91159 -8.64768 -7.25654 -5.74259 -3.09952 -0.83727 -0.42350 1.04977 1.77226 2.29316 2.67147 2.97175 3.29943 3.34321 3.42607 3.46680 3.50769 3.52509 3.83877 4.05924 4.29633 4.38653 4.51786 4.62769 4.68215 4.73563 4.86022 5.01210 5.09674 5.23101 5.30273 5.34104 5.45419 5.54116 5.56101 5.59944 5.68938 5.75390 5.83734 5.92057 5.93579 6.05450 6.12305 6.18433 6.26282 6.36453 6.46149 6.57049 6.76449 7.04167 7.28282 7.64817 7.90015 8.01487 8.44666 9.22988 9.95893 10.14881 11.43897 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023035 B = 0.002376 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.242106 B =11780.731036 C =12712.402444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.190 3.810 3 H 0.063 0.937 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.276 1.276 13 C -0.106 4.106 14 H 0.087 0.913 15 C -0.132 4.132 16 C 0.110 3.890 17 N -0.592 5.592 18 C 0.595 3.405 19 O -0.502 6.502 20 C 0.225 3.775 21 N -0.228 5.228 22 N -0.142 5.142 23 C 0.019 3.981 24 C -0.067 4.067 25 C -0.090 4.090 26 C -0.072 4.072 27 C -0.086 4.086 28 C 0.133 3.867 29 N -0.395 5.395 30 C 0.106 3.894 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.086 0.914 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -9.496 33.826 35.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.080 3.920 3 H 0.081 0.919 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.109 0.891 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.126 4.126 14 H 0.105 0.895 15 C -0.170 4.170 16 C -0.013 4.013 17 N -0.326 5.326 18 C 0.376 3.624 19 O -0.373 6.373 20 C -0.047 4.047 21 N -0.089 5.089 22 N -0.005 5.005 23 C -0.114 4.114 24 C -0.089 4.089 25 C -0.111 4.111 26 C -0.094 4.094 27 C -0.106 4.106 28 C -0.006 4.006 29 N -0.117 5.117 30 C -0.015 4.015 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.170 0.830 44 H 0.104 0.896 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.430 -9.095 32.681 34.096 hybrid contribution 0.381 -2.146 0.338 2.206 sum -3.049 -11.241 33.018 35.012 Atomic orbital electron populations 1.22597 0.98906 1.01057 1.00703 1.20058 0.92033 0.95674 0.84209 0.91911 1.42821 1.79771 1.09559 1.07065 1.19051 1.36954 0.95699 0.85439 0.89113 1.24658 1.01417 0.97419 0.95590 1.69702 1.52721 1.35587 1.00157 0.86614 0.78272 0.86891 0.77156 1.21012 1.21768 1.20252 1.22765 1.00901 0.93319 0.95651 0.89459 1.22899 1.03057 0.96895 0.94165 1.22256 1.02893 0.82187 0.93958 1.48309 1.70260 1.04770 1.09245 1.16545 0.79296 0.82929 0.83589 1.90855 1.48927 1.38960 1.58596 1.24372 0.96209 0.86351 0.97742 1.74271 1.08519 1.27447 0.98706 1.74525 1.02801 1.20190 1.03028 1.21021 1.00763 0.92344 0.97272 1.20832 0.97651 0.99188 0.91200 1.21265 0.96687 0.91709 1.01436 1.21284 0.95081 1.00113 0.92962 1.20960 0.98926 0.95309 0.95366 1.19773 0.96181 0.95409 0.89269 1.69107 1.06726 1.23883 1.12015 1.22649 1.02737 0.97087 0.79040 0.93250 0.93636 0.92166 0.80649 0.93103 0.89676 0.89527 0.90612 0.90514 0.83043 0.83630 0.83571 0.82991 0.89598 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.84 37.16 0.33 -2.50 16 2 C 0.19 3.41 2.84 -67.93 -0.19 3.22 16 3 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 4 N -0.75 -17.28 4.87 -53.42 -0.26 -17.54 16 5 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 6 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 7 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 8 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 9 Si 0.88 22.64 27.73 -169.99 -4.71 17.93 16 10 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 12 H -0.28 -6.76 6.52 56.52 0.37 -6.40 16 13 C -0.11 -1.58 3.07 -88.47 -0.27 -1.85 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -1.49 6.31 -24.87 -0.16 -1.65 16 16 C 0.11 1.29 5.39 -3.04 -0.02 1.28 16 17 N -0.59 -8.76 3.33 -171.38 -0.57 -9.33 16 18 C 0.59 9.82 7.88 -12.06 -0.10 9.72 16 19 O -0.50 -9.90 17.12 5.38 0.09 -9.81 16 20 C 0.23 3.29 7.62 -156.55 -1.19 2.09 16 21 N -0.23 -2.95 7.99 32.10 0.26 -2.69 16 22 N -0.14 -1.62 11.68 32.28 0.38 -1.25 16 23 C 0.02 0.18 6.68 -84.70 -0.57 -0.39 16 24 C -0.07 -0.36 10.00 -39.53 -0.40 -0.76 16 25 C -0.09 -0.28 9.95 -39.87 -0.40 -0.67 16 26 C -0.07 -0.25 9.95 -39.89 -0.40 -0.65 16 27 C -0.09 -0.58 10.01 -39.49 -0.40 -0.98 16 28 C 0.13 1.41 6.61 -84.77 -0.56 0.85 16 29 N -0.40 -5.55 10.22 -8.99 -0.09 -5.64 16 30 C 0.11 1.68 5.68 -2.53 -0.01 1.66 16 31 H 0.05 0.81 6.04 -51.93 -0.31 0.49 16 32 H 0.04 0.60 6.07 -51.93 -0.32 0.29 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.36 8.37 4.93 -40.82 -0.20 8.17 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.92 5.75 -51.93 -0.30 0.62 16 38 H 0.08 0.84 7.53 -51.93 -0.39 0.45 16 39 H 0.08 0.88 7.38 -51.93 -0.38 0.50 16 40 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 41 H 0.15 -0.03 8.06 -52.48 -0.42 -0.45 16 42 H 0.15 0.05 8.06 -52.48 -0.42 -0.37 16 43 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.09 1.36 5.66 -51.93 -0.29 1.07 16 45 H 0.08 1.44 7.79 -51.93 -0.40 1.03 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -35.82 366.64 -8.76 -44.57 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.57 Total: 4.32 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -4.58 Total: 2.55 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: 0.49 Total: -65.09 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.82 -8.76 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.339 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds