Wall clock time and date at job start Wed Apr 1 2020 00:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00056 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00155 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46896 * 90.00225 * 9 7 5 11 11 H 1.48501 * 109.47275 * 210.00265 * 9 7 5 12 12 H 1.48499 * 109.47039 * 330.00065 * 9 7 5 13 13 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 14 14 H 1.09003 * 110.88555 * 179.29709 * 13 2 1 15 15 C 1.55160 * 111.00374 * 303.17602 * 13 2 1 16 16 C 1.54365 * 102.91732 * 153.54491 * 15 13 2 17 17 N 1.47019 * 107.29483 * 337.86631 * 16 15 13 18 18 C 1.34770 * 125.65377 * 178.87258 * 17 16 15 19 19 O 1.21485 * 120.00467 * 180.02562 * 18 17 16 20 20 C 1.48434 * 119.99898 * 0.03825 * 18 17 16 21 21 N 1.33497 * 119.21963 * 359.72971 * 20 18 17 22 22 N 1.28914 * 122.01963 * 179.73807 * 21 20 18 23 23 C 1.33817 * 119.74886 * 0.52532 * 22 21 20 24 24 C 1.40340 * 121.77896 * 179.74112 * 23 22 21 25 25 C 1.36183 * 119.62032 * 180.02562 * 24 23 22 26 26 C 1.39448 * 121.07391 * 0.02562 * 25 24 23 27 27 C 1.36129 * 121.01364 * 359.97108 * 26 25 24 28 28 C 1.40506 * 119.56531 * 0.02943 * 27 26 25 29 29 N 1.32066 * 119.22028 * 179.97438 * 20 18 17 30 30 C 1.47427 * 108.69817 * 358.90490 * 17 16 15 31 31 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 33 33 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 34 34 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 35 35 H 0.97000 * 119.99835 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.71988 * 271.94244 * 15 13 2 37 37 H 1.09006 * 110.71781 * 35.21855 * 15 13 2 38 38 H 1.09005 * 109.90277 * 218.42504 * 16 15 13 39 39 H 1.09002 * 109.97324 * 97.34542 * 16 15 13 40 40 H 1.08000 * 120.18602 * 0.02562 * 24 23 22 41 41 H 1.08004 * 119.46195 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.49225 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.21875 * 180.02562 * 27 26 25 44 44 H 1.09005 * 110.36679 * 265.28986 * 30 17 16 45 45 H 1.09002 * 110.46081 * 143.01961 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.7260 -0.0080 -4.6460 9 14 3.0575 -2.4737 -3.4250 10 1 1.8626 -3.2973 -3.7399 11 1 4.1315 -2.7632 -4.4089 12 1 3.5375 -2.8000 -2.0581 13 6 2.0400 -0.7213 1.2492 14 1 3.1296 -0.7456 1.2662 15 6 1.4780 -0.0657 2.5383 16 6 1.4924 -1.2299 3.5519 17 7 1.4919 -2.4813 2.7803 18 6 1.5239 -3.7244 3.2997 19 8 1.5204 -4.6908 2.5635 20 6 1.5632 -3.9130 4.7715 21 7 1.5718 -2.8403 5.5660 22 7 1.6005 -2.9414 6.8509 23 6 1.6332 -4.1516 7.4210 24 6 1.6706 -4.3112 8.8148 25 6 1.7036 -5.5637 9.3483 26 6 1.7014 -6.6941 8.5317 27 6 1.6657 -6.5797 7.1757 28 6 1.6310 -5.3038 6.5883 29 7 1.5938 -5.1381 5.2639 30 6 1.4512 -2.1509 1.3441 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5140 -0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 3.0494 -0.4652 -5.4379 36 1 2.1253 0.7453 2.8722 37 1 0.4612 0.2923 2.3771 38 1 0.6050 -1.1832 4.1832 39 1 2.3893 -1.1753 4.1690 40 1 1.6731 -3.4455 9.4606 41 1 1.7327 -5.6835 10.4213 42 1 1.7285 -7.6754 8.9820 43 1 1.6641 -7.4638 6.5555 44 1 0.4235 -2.1629 0.9810 45 1 2.0621 -2.8514 0.7746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501059127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:04 Heat of formation + Delta-G solvation = 74.987939 kcal Electronic energy + Delta-G solvation = -28850.868713 eV Core-core repulsion = 24869.500841 eV Total energy + Delta-G solvation = -3981.367872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27655 -41.33532 -39.50430 -39.00149 -37.00269 -36.46567 -34.48609 -33.35224 -32.39746 -31.99320 -30.52639 -29.46397 -27.62153 -26.94227 -25.91288 -24.88501 -23.69933 -23.01233 -21.95156 -20.68581 -20.43096 -20.00679 -19.45546 -18.26634 -17.74482 -17.49910 -17.16114 -16.70510 -16.59512 -16.00758 -15.91767 -15.64091 -15.34804 -14.91084 -14.79671 -14.44490 -14.27566 -14.12121 -13.98790 -13.72218 -13.69815 -13.57112 -13.29213 -13.20217 -13.12083 -12.87010 -12.74811 -12.46473 -12.30735 -12.16420 -11.91820 -11.74068 -11.56879 -11.49984 -11.43333 -10.95851 -10.76420 -10.65231 -9.96383 -9.76222 -9.30527 -8.01676 -5.32870 -1.50190 -1.14822 0.47944 0.97526 1.24399 1.35947 1.37460 1.42951 1.82065 2.18765 2.46630 2.54025 2.62535 2.74484 3.17075 3.30489 3.35238 3.54426 3.60086 3.70221 3.82813 3.95233 3.98206 4.16704 4.26096 4.35619 4.38332 4.42669 4.55989 4.61978 4.67135 4.78271 4.82847 4.90175 4.92898 4.98960 5.02897 5.09718 5.16114 5.19899 5.29669 5.38923 5.48830 5.62636 5.66491 5.81021 6.12954 6.23557 6.60573 6.92848 7.09416 7.87264 8.03423 9.19875 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023035 B = 0.002376 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.242106 B =11780.731036 C =12712.402444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.184 3.816 3 H 0.062 0.938 4 N -0.755 5.755 5 C -0.217 4.217 6 H 0.066 0.934 7 C -0.062 4.062 8 N -0.982 5.982 9 Si 0.941 3.059 10 H -0.283 1.283 11 H -0.296 1.296 12 H -0.260 1.260 13 C -0.097 4.097 14 H 0.081 0.919 15 C -0.117 4.117 16 C 0.112 3.888 17 N -0.589 5.589 18 C 0.590 3.410 19 O -0.551 6.551 20 C 0.201 3.799 21 N -0.238 5.238 22 N -0.156 5.156 23 C 0.012 3.988 24 C -0.077 4.077 25 C -0.062 4.062 26 C -0.039 4.039 27 C -0.111 4.111 28 C 0.112 3.888 29 N -0.430 5.430 30 C 0.106 3.894 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.360 0.640 35 H 0.256 0.744 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.175 0.825 41 H 0.195 0.805 42 H 0.191 0.809 43 H 0.155 0.845 44 H 0.086 0.914 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -10.714 39.591 41.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.076 3.924 3 H 0.080 0.920 4 N -0.398 5.398 5 C -0.348 4.348 6 H 0.084 0.916 7 C -0.254 4.254 8 N -0.633 5.633 9 Si 0.770 3.230 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.185 1.185 13 C -0.117 4.117 14 H 0.099 0.901 15 C -0.155 4.155 16 C -0.009 4.009 17 N -0.321 5.321 18 C 0.374 3.626 19 O -0.427 6.427 20 C -0.071 4.071 21 N -0.099 5.099 22 N -0.018 5.018 23 C -0.122 4.122 24 C -0.098 4.098 25 C -0.082 4.082 26 C -0.061 4.061 27 C -0.131 4.131 28 C -0.027 4.027 29 N -0.152 5.152 30 C -0.016 4.016 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.193 0.807 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.192 0.808 41 H 0.213 0.787 42 H 0.208 0.792 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.746 -10.257 38.518 40.036 hybrid contribution 0.439 -1.855 -1.062 2.182 sum -3.307 -12.112 37.456 39.504 Atomic orbital electron populations 1.22472 0.97220 1.01239 1.01472 1.20309 0.93082 0.95483 0.83510 0.91978 1.42927 1.79980 1.09609 1.07287 1.19059 1.34078 0.94742 0.86900 0.91608 1.25343 1.02991 1.01486 0.95532 1.69854 1.55221 1.37312 1.00948 0.85619 0.77696 0.82071 0.77653 1.20989 1.22272 1.18534 1.22570 1.00518 0.92746 0.95892 0.90058 1.22921 1.04127 0.97005 0.91478 1.22405 1.03799 0.80781 0.93916 1.48357 1.69339 1.05389 1.09019 1.16928 0.78379 0.82708 0.84599 1.90799 1.51389 1.40413 1.60059 1.23811 0.99310 0.87300 0.96628 1.74170 1.09761 1.26671 0.99304 1.74393 1.03534 1.21475 1.02360 1.21518 1.00378 0.91268 0.99007 1.21258 0.97847 1.01481 0.89250 1.21908 0.92370 0.90153 1.03761 1.21894 0.90424 1.02498 0.91320 1.21222 1.00794 0.93912 0.97171 1.20342 0.96742 0.97408 0.88242 1.68991 1.07898 1.24017 1.14307 1.22548 1.02217 0.97091 0.79749 0.93382 0.89648 0.94608 0.80690 0.93532 0.87111 0.88143 0.89422 0.89964 0.80753 0.78740 0.79153 0.82720 0.89630 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 8.84 71.98 0.64 -4.59 16 2 C 0.18 6.49 2.84 44.99 0.13 6.62 16 3 H 0.06 2.23 8.08 -2.38 -0.02 2.21 16 4 N -0.75 -35.10 4.87 -322.93 -1.57 -36.67 16 5 C -0.22 -12.30 10.41 84.03 0.87 -11.43 16 6 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 7 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 8 N -0.98 -63.94 13.97 21.65 0.30 -63.64 16 9 Si 0.94 48.07 27.73 68.60 1.90 49.97 16 10 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 12 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 13 C -0.10 -2.81 3.07 -9.40 -0.03 -2.84 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.12 -2.36 6.31 31.80 0.20 -2.16 16 16 C 0.11 2.52 5.39 86.74 0.47 2.99 16 17 N -0.59 -17.75 3.33 -814.45 -2.71 -20.46 16 18 C 0.59 20.62 7.88 86.96 0.69 21.31 16 19 O -0.55 -23.33 17.12 -3.67 -0.06 -23.39 16 20 C 0.20 6.16 7.62 137.45 1.05 7.21 16 21 N -0.24 -6.23 7.99 -52.34 -0.42 -6.65 16 22 N -0.16 -3.48 11.68 -51.79 -0.60 -4.08 16 23 C 0.01 0.22 6.68 40.33 0.27 0.49 16 24 C -0.08 -0.53 10.00 22.30 0.22 -0.31 16 25 C -0.06 0.00 9.95 22.08 0.22 0.22 16 26 C -0.04 -0.07 9.95 22.07 0.22 0.15 16 27 C -0.11 -1.28 10.01 22.33 0.22 -1.05 16 28 C 0.11 2.32 6.61 40.42 0.27 2.59 16 29 N -0.43 -12.69 10.22 -182.36 -1.86 -14.55 16 30 C 0.11 3.40 5.68 86.85 0.49 3.89 16 31 H 0.05 1.54 6.04 -2.39 -0.01 1.52 16 32 H 0.08 2.02 6.07 -2.39 -0.01 2.01 16 33 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.36 16.82 4.93 -92.70 -0.46 16.36 16 35 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 1.78 5.75 -2.38 -0.01 1.76 16 38 H 0.09 1.81 7.53 -2.38 -0.02 1.79 16 39 H 0.08 1.80 7.38 -2.39 -0.02 1.78 16 40 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 41 H 0.20 -1.71 8.06 -2.91 -0.02 -1.73 16 42 H 0.19 -1.24 8.06 -2.91 -0.02 -1.27 16 43 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.09 2.74 5.66 -2.38 -0.01 2.73 16 45 H 0.05 2.03 7.79 -2.39 -0.02 2.01 16 Total: -1.00 -85.73 366.64 1.90 -83.83 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.53 Total: 15.83 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.39 Total: 19.81 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -6.87 Total: -146.06 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.90 Total: 49.97 kcal Total: -85.73 1.90 -83.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.821 kcal (2) G-P(sol) polarization free energy of solvation -85.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds