Wall clock time and date at job start Wed Apr 1 2020 00:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47228 * 2 1 4 4 N 1.46496 * 109.47280 * 119.99986 * 2 1 3 5 5 C 1.36940 * 119.99888 * 275.00183 * 4 2 1 6 6 H 1.07994 * 120.00147 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99822 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47085 * 89.99771 * 9 7 5 11 11 H 1.48495 * 109.47127 * 209.99743 * 9 7 5 12 12 H 1.48506 * 109.46750 * 330.00009 * 9 7 5 13 13 C 1.53003 * 109.46975 * 240.00151 * 2 1 3 14 14 H 1.08996 * 110.91108 * 299.19106 * 13 2 1 15 15 C 1.55453 * 111.11550 * 175.20233 * 13 2 1 16 16 C 1.54321 * 102.96661 * 206.46339 * 15 13 2 17 17 N 1.47016 * 107.27228 * 22.19089 * 16 15 13 18 18 C 1.34776 * 125.64807 * 181.08309 * 17 16 15 19 19 O 1.21489 * 120.00265 * 179.97438 * 18 17 16 20 20 C 1.48432 * 120.00045 * 359.97262 * 18 17 16 21 21 N 1.33494 * 119.21891 * 359.72937 * 20 18 17 22 22 N 1.28917 * 122.02052 * 179.72989 * 21 20 18 23 23 C 1.33814 * 119.74694 * 0.54152 * 22 21 20 24 24 C 1.40333 * 121.78282 * 179.73548 * 23 22 21 25 25 C 1.36181 * 119.62810 * 180.02562 * 24 23 22 26 26 C 1.39440 * 121.07136 * 0.02562 * 25 24 23 27 27 C 1.36135 * 121.01677 * 359.96960 * 26 25 24 28 28 C 1.40511 * 119.55603 * 0.02817 * 27 26 25 29 29 N 1.32066 * 119.22361 * 180.02562 * 20 18 17 30 30 C 1.47427 * 108.70549 * 1.06079 * 17 16 15 31 31 H 1.08996 * 109.47222 * 174.77622 * 1 2 3 32 32 H 1.09000 * 109.47123 * 294.78137 * 1 2 3 33 33 H 1.08999 * 109.46969 * 54.77778 * 1 2 3 34 34 H 0.96998 * 119.99833 * 94.99406 * 4 2 1 35 35 H 0.97006 * 119.99320 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.70610 * 88.08925 * 15 13 2 37 37 H 1.08999 * 110.85542 * 324.90685 * 15 13 2 38 38 H 1.09001 * 109.87746 * 262.77589 * 16 15 13 39 39 H 1.08996 * 109.87928 * 141.61341 * 16 15 13 40 40 H 1.08002 * 120.18643 * 0.02562 * 24 23 22 41 41 H 1.08007 * 119.46754 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.49300 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.22257 * 180.02562 * 27 26 25 44 44 H 1.08997 * 110.36522 * 94.70986 * 30 17 16 45 45 H 1.08999 * 110.36588 * 216.92171 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6619 3.5092 8 7 2.9235 -1.9392 3.4503 9 14 2.7891 0.2698 5.1186 10 1 1.5211 0.1785 5.8860 11 1 3.8933 -0.3235 5.9147 12 1 3.0941 1.6951 4.8342 13 6 2.0400 -0.7212 -1.2493 14 1 1.7015 -1.7572 -1.2659 15 6 3.5891 -0.6394 -1.3501 16 6 3.8443 -0.7598 -2.8673 17 7 2.6058 -0.3602 -3.5513 18 6 2.4139 -0.3484 -4.8852 19 8 1.3440 0.0017 -5.3420 20 6 3.5098 -0.7632 -5.7964 21 7 4.6809 -1.1398 -5.2780 22 7 5.6672 -1.5150 -6.0184 23 6 5.5326 -1.5226 -7.3498 24 6 6.5798 -1.9176 -8.1963 25 6 6.3950 -1.9082 -9.5455 26 6 5.1799 -1.5112 -10.1026 27 6 4.1407 -1.1215 -9.3142 28 6 4.2937 -1.1180 -7.9175 29 7 3.3053 -0.7452 -7.1010 30 6 1.6082 0.0248 -2.5363 31 1 -0.3633 -1.0233 -0.0936 32 1 -0.3633 0.4308 0.9330 33 1 -0.3633 0.5927 -0.8395 34 1 2.2490 -1.6317 1.1526 35 1 3.2469 -2.3964 4.2424 36 1 4.0544 -1.4664 -0.8138 37 1 3.9526 0.3164 -0.9725 38 1 4.0918 -1.7906 -3.1208 39 1 4.6594 -0.0980 -3.1597 40 1 7.5271 -2.2274 -7.7802 41 1 7.2028 -2.2123 -10.1946 42 1 5.0613 -1.5131 -11.1761 43 1 3.2051 -0.8169 -9.7594 44 1 1.6280 1.1026 -2.3748 45 1 0.6121 -0.2938 -2.8434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501059128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:07 Heat of formation + Delta-G solvation = 90.668929 kcal Electronic energy + Delta-G solvation = -28557.113288 eV Core-core repulsion = 24576.425395 eV Total energy + Delta-G solvation = -3980.687894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.47209 -40.07743 -38.55111 -37.79775 -35.71353 -35.19648 -32.88297 -32.19141 -31.49869 -30.46950 -29.24908 -27.72054 -26.66479 -26.09758 -24.39811 -23.19807 -23.06660 -21.40531 -20.83626 -19.77644 -19.59819 -19.02064 -17.42723 -17.03951 -16.71844 -16.58219 -16.06194 -15.60518 -15.43401 -14.86446 -14.78997 -14.16619 -13.77324 -13.55923 -13.40991 -13.20426 -13.08316 -12.98294 -12.65360 -12.58898 -12.57187 -12.49223 -12.30412 -12.07266 -11.92851 -11.55474 -11.19177 -10.86731 -10.67575 -10.55563 -10.36357 -10.29205 -10.19560 -10.13283 -9.87296 -9.72408 -9.61875 -9.32782 -8.89432 -8.64982 -6.94333 -5.74987 -3.03232 -0.79032 -0.37304 1.09480 1.81334 2.33724 2.70184 3.02670 3.35191 3.38767 3.44757 3.50275 3.51531 3.57649 3.89200 4.10170 4.34222 4.44474 4.55913 4.58961 4.86543 4.89385 4.95116 5.13995 5.18814 5.28178 5.34499 5.47876 5.55979 5.58080 5.62819 5.77616 5.87567 5.90700 5.99427 6.02655 6.12084 6.16547 6.27792 6.38805 6.44566 6.49325 6.63340 6.67631 6.89573 7.12610 7.32729 7.69869 7.72257 7.93359 8.43577 9.55055 10.12355 10.47360 11.47602 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002114 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.516765 B =13241.571979 C =14152.849947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.721 5.721 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.118 4.118 16 C 0.106 3.894 17 N -0.591 5.591 18 C 0.597 3.403 19 O -0.508 6.508 20 C 0.224 3.776 21 N -0.226 5.226 22 N -0.141 5.141 23 C 0.019 3.981 24 C -0.066 4.066 25 C -0.091 4.091 26 C -0.072 4.072 27 C -0.087 4.087 28 C 0.132 3.868 29 N -0.396 5.396 30 C 0.115 3.885 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.076 0.924 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 -0.265 -29.296 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.156 4.156 16 C -0.016 4.016 17 N -0.324 5.324 18 C 0.379 3.621 19 O -0.380 6.380 20 C -0.048 4.048 21 N -0.087 5.087 22 N -0.004 5.004 23 C -0.114 4.114 24 C -0.088 4.088 25 C -0.112 4.112 26 C -0.094 4.094 27 C -0.106 4.106 28 C -0.007 4.007 29 N -0.118 5.118 30 C -0.007 4.007 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.170 0.830 44 H 0.094 0.906 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.961 0.119 -28.469 29.308 hybrid contribution 0.154 0.051 0.079 0.180 sum 7.115 0.171 -28.390 29.268 Atomic orbital electron populations 1.22506 0.99243 1.00657 1.00479 1.20126 0.91772 0.95194 0.85384 0.93184 1.42358 1.78142 1.10677 1.05074 1.19212 1.36307 0.93839 0.87255 0.91220 1.24721 1.02315 0.95972 0.97980 1.69661 1.51034 1.08614 1.28796 0.86223 0.77243 0.78811 0.84110 1.21846 1.21863 1.20812 1.22745 0.95426 1.00325 0.93732 0.89900 1.22705 0.96055 1.04247 0.92612 1.22369 0.85484 1.01064 0.92708 1.48343 1.16764 1.63519 1.03797 1.16523 0.85136 0.79851 0.80632 1.90826 1.24668 1.47285 1.75245 1.24372 0.93910 0.96134 0.90370 1.74326 0.97671 1.06844 1.29846 1.74565 1.19502 1.04194 1.02126 1.21036 0.95801 1.00208 0.94367 1.20845 0.97973 0.97367 0.92582 1.21257 0.97954 0.97055 0.94929 1.21275 0.92163 0.94739 1.01272 1.20944 1.00970 0.99234 0.89486 1.19763 0.89602 0.95416 0.95889 1.69093 1.30136 1.09216 1.03399 1.22452 0.91942 0.99888 0.86379 0.93552 0.92530 0.94359 0.78261 0.93583 0.89266 0.90192 0.90556 0.90671 0.83019 0.83651 0.83618 0.83039 0.90575 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.22 37.16 0.34 -2.63 16 2 C 0.19 3.48 2.41 -67.93 -0.16 3.31 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -17.15 4.91 -53.42 -0.26 -17.42 16 5 C -0.23 -6.31 9.93 -15.06 -0.15 -6.45 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 9 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 C -0.10 -1.61 2.65 -88.31 -0.23 -1.84 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.12 -1.77 6.23 -24.74 -0.15 -1.93 16 16 C 0.11 1.44 5.38 -3.07 -0.02 1.43 16 17 N -0.59 -8.76 3.33 -171.42 -0.57 -9.33 16 18 C 0.60 9.62 7.88 -12.06 -0.10 9.52 16 19 O -0.51 -9.43 17.12 5.38 0.09 -9.34 16 20 C 0.22 3.31 7.62 -156.56 -1.19 2.12 16 21 N -0.23 -3.10 7.99 32.10 0.26 -2.85 16 22 N -0.14 -1.73 11.68 32.28 0.38 -1.35 16 23 C 0.02 0.19 6.68 -84.71 -0.57 -0.38 16 24 C -0.07 -0.39 10.00 -39.53 -0.40 -0.79 16 25 C -0.09 -0.31 9.95 -39.87 -0.40 -0.71 16 26 C -0.07 -0.26 9.95 -39.89 -0.40 -0.66 16 27 C -0.09 -0.59 10.01 -39.48 -0.40 -0.99 16 28 C 0.13 1.42 6.61 -84.77 -0.56 0.86 16 29 N -0.40 -5.54 10.22 -8.99 -0.09 -5.63 16 30 C 0.12 1.68 5.47 -2.53 -0.01 1.67 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.57 7.58 -51.93 -0.39 0.18 16 34 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 38 H 0.08 1.03 7.40 -51.93 -0.38 0.64 16 39 H 0.08 0.98 7.51 -51.93 -0.39 0.59 16 40 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 41 H 0.15 0.03 8.06 -52.48 -0.42 -0.39 16 42 H 0.15 0.06 8.06 -52.48 -0.42 -0.36 16 43 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 45 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -33.60 378.08 -9.37 -42.97 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.09 Total: 4.95 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -4.48 Total: 2.05 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: 0.43 Total: -63.47 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.60 -9.37 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.640 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds