Wall clock time and date at job start Wed Apr 1 2020 00:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47228 * 2 1 4 4 N 1.46496 * 109.47280 * 119.99986 * 2 1 3 5 5 C 1.36940 * 119.99888 * 275.00183 * 4 2 1 6 6 H 1.07994 * 120.00147 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99822 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47085 * 89.99771 * 9 7 5 11 11 H 1.48495 * 109.47127 * 209.99743 * 9 7 5 12 12 H 1.48506 * 109.46750 * 330.00009 * 9 7 5 13 13 C 1.53003 * 109.46975 * 240.00151 * 2 1 3 14 14 H 1.08996 * 110.91108 * 299.19106 * 13 2 1 15 15 C 1.55453 * 111.11550 * 175.20233 * 13 2 1 16 16 C 1.54321 * 102.96661 * 206.46339 * 15 13 2 17 17 N 1.47016 * 107.27228 * 22.19089 * 16 15 13 18 18 C 1.34776 * 125.64807 * 181.08309 * 17 16 15 19 19 O 1.21489 * 120.00265 * 179.97438 * 18 17 16 20 20 C 1.48432 * 120.00045 * 359.97262 * 18 17 16 21 21 N 1.33494 * 119.21891 * 359.72937 * 20 18 17 22 22 N 1.28917 * 122.02052 * 179.72989 * 21 20 18 23 23 C 1.33814 * 119.74694 * 0.54152 * 22 21 20 24 24 C 1.40333 * 121.78282 * 179.73548 * 23 22 21 25 25 C 1.36181 * 119.62810 * 180.02562 * 24 23 22 26 26 C 1.39440 * 121.07136 * 0.02562 * 25 24 23 27 27 C 1.36135 * 121.01677 * 359.96960 * 26 25 24 28 28 C 1.40511 * 119.55603 * 0.02817 * 27 26 25 29 29 N 1.32066 * 119.22361 * 180.02562 * 20 18 17 30 30 C 1.47427 * 108.70549 * 1.06079 * 17 16 15 31 31 H 1.08996 * 109.47222 * 174.77622 * 1 2 3 32 32 H 1.09000 * 109.47123 * 294.78137 * 1 2 3 33 33 H 1.08999 * 109.46969 * 54.77778 * 1 2 3 34 34 H 0.96998 * 119.99833 * 94.99406 * 4 2 1 35 35 H 0.97006 * 119.99320 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.70610 * 88.08925 * 15 13 2 37 37 H 1.08999 * 110.85542 * 324.90685 * 15 13 2 38 38 H 1.09001 * 109.87746 * 262.77589 * 16 15 13 39 39 H 1.08996 * 109.87928 * 141.61341 * 16 15 13 40 40 H 1.08002 * 120.18643 * 0.02562 * 24 23 22 41 41 H 1.08007 * 119.46754 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.49300 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.22257 * 180.02562 * 27 26 25 44 44 H 1.08997 * 110.36522 * 94.70986 * 30 17 16 45 45 H 1.08999 * 110.36588 * 216.92171 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6619 3.5092 8 7 2.9235 -1.9392 3.4503 9 14 2.7891 0.2698 5.1186 10 1 1.5211 0.1785 5.8860 11 1 3.8933 -0.3235 5.9147 12 1 3.0941 1.6951 4.8342 13 6 2.0400 -0.7212 -1.2493 14 1 1.7015 -1.7572 -1.2659 15 6 3.5891 -0.6394 -1.3501 16 6 3.8443 -0.7598 -2.8673 17 7 2.6058 -0.3602 -3.5513 18 6 2.4139 -0.3484 -4.8852 19 8 1.3440 0.0017 -5.3420 20 6 3.5098 -0.7632 -5.7964 21 7 4.6809 -1.1398 -5.2780 22 7 5.6672 -1.5150 -6.0184 23 6 5.5326 -1.5226 -7.3498 24 6 6.5798 -1.9176 -8.1963 25 6 6.3950 -1.9082 -9.5455 26 6 5.1799 -1.5112 -10.1026 27 6 4.1407 -1.1215 -9.3142 28 6 4.2937 -1.1180 -7.9175 29 7 3.3053 -0.7452 -7.1010 30 6 1.6082 0.0248 -2.5363 31 1 -0.3633 -1.0233 -0.0936 32 1 -0.3633 0.4308 0.9330 33 1 -0.3633 0.5927 -0.8395 34 1 2.2490 -1.6317 1.1526 35 1 3.2469 -2.3964 4.2424 36 1 4.0544 -1.4664 -0.8138 37 1 3.9526 0.3164 -0.9725 38 1 4.0918 -1.7906 -3.1208 39 1 4.6594 -0.0980 -3.1597 40 1 7.5271 -2.2274 -7.7802 41 1 7.2028 -2.2123 -10.1946 42 1 5.0613 -1.5131 -11.1761 43 1 3.2051 -0.8169 -9.7594 44 1 1.6280 1.1026 -2.3748 45 1 0.6121 -0.2938 -2.8434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501059128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:06 Heat of formation + Delta-G solvation = 68.142671 kcal Electronic energy + Delta-G solvation = -28558.090100 eV Core-core repulsion = 24576.425395 eV Total energy + Delta-G solvation = -3981.664705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.26077 -41.24549 -39.34160 -38.95141 -36.91345 -36.43767 -34.36642 -33.30937 -32.17335 -31.75793 -30.81978 -29.05708 -27.58073 -26.95512 -26.05315 -24.56643 -23.67641 -22.81335 -21.81334 -21.08336 -20.55047 -19.85745 -19.11172 -18.26650 -17.70169 -17.48640 -17.19686 -16.66831 -16.38594 -15.99983 -15.73779 -15.39041 -15.33549 -14.92336 -14.66933 -14.33667 -14.12934 -13.95166 -13.81672 -13.68592 -13.59982 -13.47722 -13.22025 -13.13354 -13.10595 -12.90284 -12.77624 -12.47669 -12.29794 -12.16392 -11.95597 -11.65188 -11.54164 -11.52218 -11.35950 -10.89547 -10.75857 -10.62992 -9.96679 -9.76659 -8.94778 -7.88285 -5.15095 -1.48919 -1.12836 0.49275 0.99288 1.27551 1.50387 1.51015 1.59116 1.84045 2.20832 2.54689 2.60168 2.63975 2.75508 3.19357 3.42144 3.47422 3.58772 3.67653 3.74528 3.84889 3.96575 4.17832 4.22866 4.31072 4.35771 4.40468 4.51985 4.62702 4.66191 4.69576 4.79456 4.80250 4.92179 4.97534 5.01078 5.04151 5.10952 5.17124 5.21707 5.31446 5.40388 5.49620 5.57993 5.63298 5.63893 6.12678 6.34001 6.62155 6.95375 7.40783 8.16987 8.40511 9.35078 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002114 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.516765 B =13241.571979 C =14152.849947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.051 0.949 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.075 0.925 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.292 1.292 11 H -0.298 1.298 12 H -0.270 1.270 13 C -0.092 4.092 14 H 0.079 0.921 15 C -0.112 4.112 16 C 0.120 3.880 17 N -0.590 5.590 18 C 0.597 3.403 19 O -0.543 6.543 20 C 0.198 3.802 21 N -0.245 5.245 22 N -0.162 5.162 23 C 0.012 3.988 24 C -0.080 4.080 25 C -0.061 4.061 26 C -0.039 4.039 27 C -0.108 4.108 28 C 0.113 3.887 29 N -0.424 5.424 30 C 0.120 3.880 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.373 0.627 35 H 0.248 0.752 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.171 0.829 41 H 0.195 0.805 42 H 0.193 0.807 43 H 0.159 0.841 44 H 0.085 0.915 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 0.004 -32.975 34.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.075 3.925 3 H 0.069 0.931 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.093 0.907 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.796 3.204 10 H -0.219 1.219 11 H -0.225 1.225 12 H -0.195 1.195 13 C -0.112 4.112 14 H 0.097 0.903 15 C -0.151 4.151 16 C -0.002 4.002 17 N -0.322 5.322 18 C 0.380 3.620 19 O -0.418 6.418 20 C -0.074 4.074 21 N -0.105 5.105 22 N -0.023 5.023 23 C -0.123 4.123 24 C -0.102 4.102 25 C -0.081 4.081 26 C -0.062 4.062 27 C -0.128 4.128 28 C -0.026 4.026 29 N -0.147 5.147 30 C -0.001 4.001 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.188 0.812 41 H 0.212 0.788 42 H 0.210 0.790 43 H 0.177 0.823 44 H 0.103 0.897 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.588 0.422 -32.140 33.270 hybrid contribution -0.223 -0.072 0.825 0.858 sum 8.365 0.350 -31.314 32.414 Atomic orbital electron populations 1.22374 0.97937 1.00955 1.00778 1.20292 0.92503 0.94981 0.84753 0.93122 1.42514 1.78322 1.10294 1.05903 1.19565 1.34217 0.94088 0.88195 0.90730 1.25454 1.03444 0.96845 1.01122 1.69810 1.52951 1.10054 1.29144 0.85242 0.76627 0.78150 0.80376 1.21940 1.22523 1.19516 1.22533 0.95865 0.99831 0.93005 0.90310 1.22617 0.95414 1.03552 0.93472 1.22250 0.85249 1.01372 0.91327 1.48341 1.16977 1.63186 1.03715 1.16759 0.85198 0.79120 0.80883 1.90779 1.26094 1.49063 1.75876 1.23930 0.94048 0.98747 0.90631 1.74207 0.97654 1.08202 1.30460 1.74417 1.19217 1.05056 1.03624 1.21545 0.96834 1.00010 0.93883 1.21239 0.97654 0.97865 0.93435 1.21900 0.98811 0.93230 0.94169 1.21902 0.90636 0.90427 1.03198 1.21240 1.02859 1.00795 0.87888 1.20353 0.89330 0.95738 0.97229 1.69000 1.31902 1.10294 1.03455 1.22378 0.92008 1.00168 0.85591 0.93808 0.94347 0.91325 0.79491 0.94282 0.90303 0.90576 0.90398 0.89992 0.81154 0.78823 0.78978 0.82299 0.89656 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 9.22 71.98 0.66 -4.92 16 2 C 0.18 6.88 2.41 44.99 0.11 6.99 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 4 N -0.73 -35.29 4.91 -322.94 -1.59 -36.87 16 5 C -0.23 -12.35 9.93 84.03 0.83 -11.52 16 6 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 7 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 8 N -0.97 -58.68 13.06 21.65 0.28 -58.39 16 9 Si 0.97 46.11 29.55 68.60 2.03 48.13 16 10 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C -0.09 -2.94 2.65 -9.30 -0.02 -2.97 16 14 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 15 C -0.11 -3.45 6.23 31.89 0.20 -3.25 16 16 C 0.12 3.37 5.38 86.73 0.47 3.84 16 17 N -0.59 -18.02 3.33 -814.56 -2.71 -20.73 16 18 C 0.60 20.20 7.88 86.96 0.69 20.89 16 19 O -0.54 -21.10 17.12 -3.68 -0.06 -21.17 16 20 C 0.20 6.18 7.62 137.46 1.05 7.23 16 21 N -0.25 -7.07 7.99 -52.34 -0.42 -7.49 16 22 N -0.16 -4.07 11.68 -51.80 -0.61 -4.67 16 23 C 0.01 0.22 6.68 40.32 0.27 0.49 16 24 C -0.08 -0.70 10.00 22.30 0.22 -0.48 16 25 C -0.06 -0.07 9.95 22.08 0.22 0.15 16 26 C -0.04 -0.08 9.95 22.07 0.22 0.14 16 27 C -0.11 -1.21 10.01 22.33 0.22 -0.99 16 28 C 0.11 2.39 6.61 40.42 0.27 2.65 16 29 N -0.42 -12.39 10.22 -182.37 -1.86 -14.26 16 30 C 0.12 3.52 5.47 86.85 0.48 4.00 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 34 H 0.37 19.50 7.80 -92.71 -0.72 18.77 16 35 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 36 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.08 2.40 8.05 -2.39 -0.02 2.38 16 38 H 0.08 2.19 7.40 -2.39 -0.02 2.17 16 39 H 0.08 2.22 7.51 -2.39 -0.02 2.20 16 40 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.19 -1.48 8.06 -2.91 -0.02 -1.50 16 42 H 0.19 -1.28 8.06 -2.91 -0.02 -1.30 16 43 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 44 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 45 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 Total: -1.00 -77.66 378.08 1.71 -75.95 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.30 Total: 21.11 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.34 Total: 18.38 kcal Atomic # 7 Polarization: -135.51 SS G_CDS: -6.90 Total: -142.41 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -77.66 1.71 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501059128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.094 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds