Wall clock time and date at job start Wed Apr 1 2020 00:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81402 * 103.00286 * 2 1 4 4 H 1.08996 * 109.46932 * 304.99944 * 3 2 1 5 5 C 1.53001 * 109.47070 * 64.99744 * 3 2 1 6 6 C 1.50703 * 109.47287 * 184.99727 * 3 2 1 7 7 O 1.21279 * 120.00045 * 340.00308 * 6 3 2 8 8 N 1.34774 * 119.99700 * 159.99988 * 6 3 2 9 9 C 1.49427 * 127.81805 * 359.65778 * 8 6 3 10 10 C 1.54427 * 103.83351 * 221.54343 * 9 8 6 11 11 H 1.08993 * 112.56586 * 98.42720 * 10 9 8 12 12 C 1.54403 * 108.68836 * 223.82869 * 10 9 8 13 13 N 1.48735 * 104.45967 * 137.05658 * 12 10 9 14 14 C 1.46898 * 110.99926 * 199.12374 * 13 12 10 15 15 C 1.50703 * 109.46691 * 169.99803 * 14 13 12 16 16 O 1.21286 * 120.00288 * 0.02562 * 15 14 13 17 17 N 1.34785 * 119.99435 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99543 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00252 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99711 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00136 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99873 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47527 * 89.99642 * 22 20 18 24 24 H 1.48506 * 109.46965 * 209.99405 * 22 20 18 25 25 H 1.48498 * 109.46854 * 329.99086 * 22 20 18 26 26 C 1.48836 * 103.44085 * 318.36792 * 13 12 10 27 27 C 1.54402 * 104.43887 * 41.62428 * 26 13 12 28 28 H 1.09001 * 113.06189 * 97.85852 * 27 26 13 29 29 C 1.48321 * 128.20327 * 179.97438 * 8 6 3 30 30 H 1.08999 * 109.46574 * 59.99937 * 1 2 3 31 31 H 1.08995 * 109.46658 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47150 * 300.00284 * 1 2 3 33 33 H 1.09001 * 109.47215 * 300.00240 * 5 3 2 34 34 H 1.09007 * 109.46970 * 59.99808 * 5 3 2 35 35 H 1.08993 * 109.47230 * 180.02562 * 5 3 2 36 36 H 1.08997 * 110.38373 * 103.15941 * 9 8 6 37 37 H 1.08998 * 111.03266 * 340.24704 * 9 8 6 38 38 H 1.09002 * 110.45848 * 255.83760 * 12 10 9 39 39 H 1.09003 * 110.45756 * 18.27778 * 12 10 9 40 40 H 1.08996 * 109.47366 * 290.00232 * 14 13 12 41 41 H 1.08997 * 109.47019 * 50.00305 * 14 13 12 42 42 H 0.96993 * 119.99861 * 0.02562 * 17 15 14 43 43 H 0.96996 * 119.99579 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.34028 * 282.91632 * 26 13 12 45 45 H 1.08996 * 110.59735 * 160.46726 * 26 13 12 46 46 H 1.08999 * 110.45080 * 19.37383 * 29 8 6 47 47 H 1.08992 * 110.45394 * 256.81718 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7143 1.9385 -0.1238 7 8 4.4552 1.0199 0.1556 8 7 4.2254 3.1124 -0.5449 9 6 3.4814 4.3469 -0.9390 10 6 4.2340 4.8479 -2.1909 11 1 3.7455 4.5516 -3.1191 12 6 4.4169 6.3770 -2.0793 13 7 5.8169 6.6167 -2.5203 14 6 6.2981 7.9251 -2.0570 15 6 7.7808 8.0315 -2.3047 16 8 8.3778 7.1085 -2.8173 17 7 8.4432 9.1528 -1.9576 18 6 9.7919 9.2499 -2.1835 19 1 10.3237 8.4277 -2.6392 20 6 10.4749 10.4056 -1.8252 21 7 9.8279 11.4059 -1.2703 22 14 12.3125 10.5382 -2.1336 23 1 12.5480 11.1145 -3.4818 24 1 12.9248 11.4177 -1.1055 25 1 12.9256 9.1877 -2.0584 26 6 6.5761 5.5085 -1.8795 27 6 5.6724 4.2693 -2.0577 28 1 5.9580 3.6514 -2.9090 29 6 5.6506 3.4782 -0.7314 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.6636 2.2779 1.3969 34 1 2.2354 1.9149 2.1492 35 1 1.9877 3.4637 1.3072 36 1 3.5298 5.0897 -0.1428 37 1 2.4445 4.1172 -1.1844 38 1 3.7168 6.8933 -2.7361 39 1 4.2812 6.7026 -1.0479 40 1 5.7811 8.7157 -2.6007 41 1 6.0997 8.0281 -0.9902 42 1 7.9656 9.8911 -1.5481 43 1 10.3047 12.2128 -1.0205 44 1 6.7312 5.7179 -0.8210 45 1 7.5320 5.3583 -2.3811 46 1 6.2663 2.5824 -0.8119 47 1 5.9938 4.1047 0.0918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501206380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:19 Heat of formation + Delta-G solvation = -44.511198 kcal Electronic energy + Delta-G solvation = -27593.229118 eV Core-core repulsion = 23709.830574 eV Total energy + Delta-G solvation = -3883.398544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72752 -39.19884 -37.99830 -35.66328 -33.98331 -33.76554 -31.58056 -31.13906 -30.65959 -29.22421 -27.44940 -26.09695 -25.40020 -24.44395 -23.23283 -21.43807 -19.84958 -19.60417 -19.10664 -17.87125 -17.73194 -16.92946 -16.21442 -15.94099 -15.82304 -15.35386 -15.01962 -14.77662 -14.65087 -14.48988 -14.21549 -14.06389 -13.80665 -13.66616 -13.24955 -13.07206 -12.99117 -12.60371 -12.50195 -12.26907 -12.17982 -12.12371 -11.94761 -11.64549 -11.53539 -11.36931 -11.11583 -10.95488 -10.72943 -10.72014 -10.41076 -10.25635 -10.23285 -10.07396 -9.52587 -9.05034 -8.49876 -8.09941 -8.03729 -7.97489 -6.45946 -3.86873 1.05243 2.10670 2.33274 2.62367 3.15280 3.24531 3.30094 3.83887 3.89524 3.96772 4.18566 4.28999 4.36386 4.42353 4.52215 4.67815 4.69266 4.72571 4.89995 4.98320 5.02453 5.04873 5.11565 5.12757 5.19456 5.21186 5.29642 5.37534 5.48145 5.56160 5.59803 5.67209 5.70580 5.77650 5.88303 5.89171 6.03742 6.19979 6.23288 6.56302 7.05253 7.17512 7.20106 7.51553 7.82052 8.01475 8.56576 9.13623 9.48920 10.00203 10.71605 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.001929 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.815754 B =14512.737152 C =14806.068559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.188 6.188 3 C -0.090 4.090 4 H 0.107 0.893 5 C -0.142 4.142 6 C 0.555 3.445 7 O -0.520 6.520 8 N -0.621 5.621 9 C 0.103 3.897 10 C -0.102 4.102 11 H 0.098 0.902 12 C 0.033 3.967 13 N -0.484 5.484 14 C 0.034 3.966 15 C 0.441 3.559 16 O -0.580 6.580 17 N -0.561 5.561 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.039 3.961 27 C -0.101 4.101 28 H 0.098 0.902 29 C 0.111 3.889 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.040 0.960 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.858 -13.496 3.956 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.038 5.962 3 C -0.222 4.222 4 H 0.125 0.875 5 C -0.201 4.201 6 C 0.341 3.659 7 O -0.396 6.396 8 N -0.356 5.356 9 C -0.020 4.020 10 C -0.122 4.122 11 H 0.116 0.884 12 C -0.096 4.096 13 N -0.207 5.207 14 C -0.098 4.098 15 C 0.226 3.774 16 O -0.465 6.465 17 N -0.197 5.197 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.088 4.088 27 C -0.121 4.121 28 H 0.116 0.884 29 C -0.011 4.011 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.137 0.863 46 H 0.105 0.895 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.276 -15.392 3.299 25.670 hybrid contribution -0.473 2.019 0.988 2.297 sum -20.750 -13.373 4.287 25.055 Atomic orbital electron populations 1.23557 0.95637 1.06740 1.04925 1.87504 1.04865 1.05975 1.97854 1.23301 0.97075 0.98363 1.03434 0.87485 1.21998 1.01920 1.01230 0.94971 1.19209 0.88599 0.81104 0.76979 1.90763 1.60475 1.39197 1.49136 1.49332 1.08812 1.11751 1.65681 1.22971 0.96268 0.86144 0.96641 1.22941 0.96084 0.95296 0.97834 0.88406 1.23362 0.92707 0.94417 0.99119 1.65563 1.00780 1.01343 1.53052 1.22088 0.96270 0.92735 0.98731 1.19689 0.87893 0.84601 0.85173 1.90452 1.69078 1.38837 1.48136 1.41855 1.09049 1.14806 1.54016 1.19704 0.83230 1.02001 1.37977 0.87847 1.25270 1.00630 0.95173 0.96829 1.69611 1.37064 1.05837 1.41698 0.85853 0.81997 0.78418 0.78006 1.20358 1.20931 1.19395 1.23506 0.99366 0.88289 0.97652 1.23045 0.94691 0.97056 0.97297 0.88361 1.22674 0.81535 0.99968 0.96965 0.90505 0.87726 0.90350 0.91185 0.90523 0.91096 0.90236 0.90154 0.89950 0.93621 0.89057 0.93313 0.77463 0.91836 0.94176 0.86333 0.89533 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 10.45 101.05 1.06 0.31 16 2 S -0.19 -1.85 21.04 -107.50 -2.26 -4.11 16 3 C -0.09 -0.78 2.62 -27.88 -0.07 -0.85 16 4 H 0.11 0.71 7.00 -51.93 -0.36 0.35 16 5 C -0.14 -0.93 9.08 37.16 0.34 -0.59 16 6 C 0.55 6.71 7.10 -10.99 -0.08 6.63 16 7 O -0.52 -8.47 16.33 5.56 0.09 -8.38 16 8 N -0.62 -6.60 3.33 -168.04 -0.56 -7.16 16 9 C 0.10 0.80 6.25 -1.67 -0.01 0.79 16 10 C -0.10 -0.97 4.13 -87.75 -0.36 -1.33 16 11 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 12 C 0.03 0.35 5.97 -2.07 -0.01 0.34 16 13 N -0.48 -7.43 5.35 -230.98 -1.24 -8.67 16 14 C 0.03 0.56 5.56 -4.98 -0.03 0.54 16 15 C 0.44 9.98 7.50 -10.98 -0.08 9.90 16 16 O -0.58 -14.90 13.29 5.55 0.07 -14.82 16 17 N -0.56 -13.81 5.29 -10.96 -0.06 -13.86 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 22 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.04 0.60 4.90 -2.02 -0.01 0.59 16 27 C -0.10 -1.20 4.17 -87.74 -0.37 -1.57 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 C 0.11 1.29 6.61 -2.28 -0.02 1.28 16 30 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.33 7.14 -51.93 -0.37 -0.04 16 33 H 0.07 0.33 6.92 -51.93 -0.36 -0.03 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 36 H 0.08 0.57 7.17 -51.93 -0.37 0.19 16 37 H 0.08 0.44 6.78 -51.93 -0.35 0.09 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.45 6.89 -51.93 -0.36 0.09 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 42 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.04 0.61 7.05 -51.93 -0.37 0.25 16 45 H 0.12 2.26 6.01 -51.93 -0.31 1.94 16 46 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 47 H 0.08 0.89 7.17 -51.93 -0.37 0.51 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -33.06 384.18 -9.59 -42.65 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.25 Total: 7.97 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 0.12 Total: 8.21 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -1.13 Total: -53.05 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.20 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.26 Total: -4.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.06 -9.59 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501206380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.862 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds