Wall clock time and date at job start Wed Apr 1 2020 00:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81402 * 103.00286 * 2 1 4 4 H 1.08996 * 109.46932 * 304.99944 * 3 2 1 5 5 C 1.53001 * 109.47070 * 64.99744 * 3 2 1 6 6 C 1.50703 * 109.47287 * 184.99727 * 3 2 1 7 7 O 1.21279 * 120.00045 * 340.00308 * 6 3 2 8 8 N 1.34774 * 119.99700 * 159.99988 * 6 3 2 9 9 C 1.49427 * 127.81805 * 359.65778 * 8 6 3 10 10 C 1.54427 * 103.83351 * 221.54343 * 9 8 6 11 11 H 1.08993 * 112.56586 * 98.42720 * 10 9 8 12 12 C 1.54403 * 108.68836 * 223.82869 * 10 9 8 13 13 N 1.48735 * 104.45967 * 137.05658 * 12 10 9 14 14 C 1.46898 * 110.99926 * 199.12374 * 13 12 10 15 15 C 1.50703 * 109.46691 * 169.99803 * 14 13 12 16 16 O 1.21286 * 120.00288 * 0.02562 * 15 14 13 17 17 N 1.34785 * 119.99435 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99543 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00252 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99711 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00136 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99873 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47527 * 89.99642 * 22 20 18 24 24 H 1.48506 * 109.46965 * 209.99405 * 22 20 18 25 25 H 1.48498 * 109.46854 * 329.99086 * 22 20 18 26 26 C 1.48836 * 103.44085 * 318.36792 * 13 12 10 27 27 C 1.54402 * 104.43887 * 41.62428 * 26 13 12 28 28 H 1.09001 * 113.06189 * 97.85852 * 27 26 13 29 29 C 1.48321 * 128.20327 * 179.97438 * 8 6 3 30 30 H 1.08999 * 109.46574 * 59.99937 * 1 2 3 31 31 H 1.08995 * 109.46658 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47150 * 300.00284 * 1 2 3 33 33 H 1.09001 * 109.47215 * 300.00240 * 5 3 2 34 34 H 1.09007 * 109.46970 * 59.99808 * 5 3 2 35 35 H 1.08993 * 109.47230 * 180.02562 * 5 3 2 36 36 H 1.08997 * 110.38373 * 103.15941 * 9 8 6 37 37 H 1.08998 * 111.03266 * 340.24704 * 9 8 6 38 38 H 1.09002 * 110.45848 * 255.83760 * 12 10 9 39 39 H 1.09003 * 110.45756 * 18.27778 * 12 10 9 40 40 H 1.08996 * 109.47366 * 290.00232 * 14 13 12 41 41 H 1.08997 * 109.47019 * 50.00305 * 14 13 12 42 42 H 0.96993 * 119.99861 * 0.02562 * 17 15 14 43 43 H 0.96996 * 119.99579 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.34028 * 282.91632 * 26 13 12 45 45 H 1.08996 * 110.59735 * 160.46726 * 26 13 12 46 46 H 1.08999 * 110.45080 * 19.37383 * 29 8 6 47 47 H 1.08992 * 110.45394 * 256.81718 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7143 1.9385 -0.1238 7 8 4.4552 1.0199 0.1556 8 7 4.2254 3.1124 -0.5449 9 6 3.4814 4.3469 -0.9390 10 6 4.2340 4.8479 -2.1909 11 1 3.7455 4.5516 -3.1191 12 6 4.4169 6.3770 -2.0793 13 7 5.8169 6.6167 -2.5203 14 6 6.2981 7.9251 -2.0570 15 6 7.7808 8.0315 -2.3047 16 8 8.3778 7.1085 -2.8173 17 7 8.4432 9.1528 -1.9576 18 6 9.7919 9.2499 -2.1835 19 1 10.3237 8.4277 -2.6392 20 6 10.4749 10.4056 -1.8252 21 7 9.8279 11.4059 -1.2703 22 14 12.3125 10.5382 -2.1336 23 1 12.5480 11.1145 -3.4818 24 1 12.9248 11.4177 -1.1055 25 1 12.9256 9.1877 -2.0584 26 6 6.5761 5.5085 -1.8795 27 6 5.6724 4.2693 -2.0577 28 1 5.9580 3.6514 -2.9090 29 6 5.6506 3.4782 -0.7314 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.6636 2.2779 1.3969 34 1 2.2354 1.9149 2.1492 35 1 1.9877 3.4637 1.3072 36 1 3.5298 5.0897 -0.1428 37 1 2.4445 4.1172 -1.1844 38 1 3.7168 6.8933 -2.7361 39 1 4.2812 6.7026 -1.0479 40 1 5.7811 8.7157 -2.6007 41 1 6.0997 8.0281 -0.9902 42 1 7.9656 9.8911 -1.5481 43 1 10.3047 12.2128 -1.0205 44 1 6.7312 5.7179 -0.8210 45 1 7.5320 5.3583 -2.3811 46 1 6.2663 2.5824 -0.8119 47 1 5.9938 4.1047 0.0918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501206380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:18 Heat of formation + Delta-G solvation = -69.014081 kcal Electronic energy + Delta-G solvation = -27594.291642 eV Core-core repulsion = 23709.830574 eV Total energy + Delta-G solvation = -3884.461068 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67866 -40.45012 -39.49680 -36.82879 -35.85062 -34.52290 -33.32380 -32.41435 -31.56187 -29.64796 -28.77131 -27.05435 -26.66161 -25.67017 -24.17975 -22.53676 -21.13241 -20.58306 -20.42526 -19.78945 -18.55099 -17.72086 -17.65646 -17.03920 -16.85052 -16.55717 -16.21335 -16.11671 -16.01183 -15.41437 -15.34756 -15.19883 -14.74610 -14.46619 -14.30311 -14.20562 -13.72728 -13.61751 -13.45586 -13.29807 -13.21325 -13.06931 -13.01297 -12.88370 -12.70657 -12.60574 -12.43530 -12.38828 -12.15084 -11.92075 -11.81832 -11.65229 -11.44732 -11.01018 -10.80558 -10.20363 -10.00502 -9.92991 -9.35123 -8.74726 -8.47049 -5.95135 0.42737 1.37096 1.41289 1.43006 1.53370 1.62485 1.80321 2.05221 2.28381 2.87647 3.10971 3.20508 3.35693 3.46154 3.65402 3.75452 3.87802 3.90058 4.04138 4.20832 4.25312 4.29979 4.34692 4.36595 4.38885 4.48137 4.54458 4.56333 4.60798 4.63823 4.68520 4.74073 4.79102 4.88389 4.93046 4.98664 5.10575 5.12473 5.29642 5.30391 5.41552 5.84824 5.92374 6.11885 6.37137 6.60946 6.94174 7.13390 7.56491 8.12713 8.70241 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.001929 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.815754 B =14512.737152 C =14806.068559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.275 6.275 3 C -0.070 4.070 4 H 0.136 0.864 5 C -0.138 4.138 6 C 0.546 3.454 7 O -0.574 6.574 8 N -0.619 5.619 9 C 0.106 3.894 10 C -0.092 4.092 11 H 0.112 0.888 12 C 0.036 3.964 13 N -0.506 5.506 14 C 0.047 3.953 15 C 0.437 3.563 16 O -0.616 6.616 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.275 1.275 26 C 0.045 3.955 27 C -0.095 4.095 28 H 0.088 0.912 29 C 0.113 3.887 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.357 -12.301 4.276 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.050 6.050 3 C -0.202 4.202 4 H 0.154 0.846 5 C -0.197 4.197 6 C 0.335 3.665 7 O -0.454 6.454 8 N -0.352 5.352 9 C -0.016 4.016 10 C -0.112 4.112 11 H 0.130 0.870 12 C -0.092 4.092 13 N -0.230 5.230 14 C -0.085 4.085 15 C 0.225 3.775 16 O -0.502 6.502 17 N -0.210 5.210 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.200 1.200 26 C -0.084 4.084 27 C -0.115 4.115 28 H 0.106 0.894 29 C -0.010 4.010 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.824 -14.161 3.617 27.950 hybrid contribution 0.588 1.595 0.855 1.903 sum -23.236 -12.566 4.472 26.792 Atomic orbital electron populations 1.23580 0.90785 1.07727 1.06494 1.87847 1.10266 1.08800 1.98111 1.23248 0.94225 0.97025 1.05663 0.84623 1.22014 1.03233 1.01569 0.92875 1.19929 0.90084 0.80533 0.75980 1.90738 1.62087 1.41064 1.51483 1.49388 1.08465 1.12452 1.64892 1.23200 0.97403 0.84924 0.96039 1.22957 0.94206 0.94433 0.99594 0.86979 1.23495 0.89779 0.95237 1.00680 1.65532 1.03309 1.00287 1.53848 1.21970 0.91566 0.94440 1.00508 1.20830 0.90428 0.83139 0.83117 1.90457 1.70788 1.39852 1.49131 1.41925 1.08440 1.15729 1.54945 1.19633 0.84851 1.02047 1.39585 0.90419 1.25993 1.04489 0.94506 0.96213 1.69665 1.38461 1.06100 1.41788 0.84966 0.77136 0.78141 0.78332 1.19680 1.19557 1.19959 1.23246 0.98286 0.90225 0.96593 1.22858 0.96125 0.95532 0.96982 0.89405 1.22508 0.82606 0.98980 0.96917 0.88858 0.87081 0.88702 0.88616 0.92575 0.89473 0.88596 0.86486 0.87770 0.91744 0.86859 0.91026 0.76976 0.91330 0.94581 0.91091 0.91706 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.45 113.37 1.19 0.28 16 2 S -0.28 -5.20 21.04 -56.49 -1.19 -6.38 16 3 C -0.07 -1.03 2.62 29.85 0.08 -0.96 16 4 H 0.14 1.18 7.00 -2.39 -0.02 1.16 16 5 C -0.14 -1.36 9.08 71.98 0.65 -0.70 16 6 C 0.55 12.74 7.10 87.66 0.62 13.36 16 7 O -0.57 -19.43 16.33 -3.03 -0.05 -19.48 16 8 N -0.62 -12.08 3.33 -803.95 -2.68 -14.76 16 9 C 0.11 1.18 6.25 86.30 0.54 1.72 16 10 C -0.09 -1.45 4.13 -8.93 -0.04 -1.49 16 11 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 12 C 0.04 0.62 5.97 86.42 0.52 1.14 16 13 N -0.51 -14.78 5.35 -884.70 -4.73 -19.51 16 14 C 0.05 1.49 5.56 85.56 0.48 1.97 16 15 C 0.44 20.15 7.50 87.66 0.66 20.81 16 16 O -0.62 -33.06 13.29 -3.05 -0.04 -33.10 16 17 N -0.57 -28.78 5.29 -306.98 -1.62 -30.41 16 18 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 21 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 22 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.04 1.39 4.90 86.40 0.42 1.82 16 27 C -0.09 -2.23 4.17 -8.93 -0.04 -2.27 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 C 0.11 2.66 6.61 86.52 0.57 3.23 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.44 7.14 -2.39 -0.02 0.42 16 33 H 0.10 0.47 6.92 -2.39 -0.02 0.45 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.09 0.60 7.87 -2.39 -0.02 0.58 16 36 H 0.10 0.85 7.17 -2.39 -0.02 0.84 16 37 H 0.12 0.54 6.78 -2.39 -0.02 0.52 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 0.93 6.89 -2.39 -0.02 0.92 16 40 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.07 1.99 7.90 -2.39 -0.02 1.97 16 42 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 43 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.04 1.12 7.05 -2.39 -0.02 1.11 16 45 H 0.07 2.90 6.01 -2.39 -0.01 2.89 16 46 H 0.06 1.79 7.88 -2.39 -0.02 1.77 16 47 H 0.08 1.81 7.17 -2.39 -0.02 1.79 16 Total: -1.00 -77.68 384.18 -0.82 -78.50 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.26 Total: 28.09 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.93 Total: 20.90 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -8.75 Total: -113.38 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -0.09 Total: -52.59 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.19 Total: -6.38 kcal Total: -77.68 -0.82 -78.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501206380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.486 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds