Wall clock time and date at job start Wed Apr 1 2020 00:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00154 * 2 1 4 4 H 1.09001 * 109.47232 * 54.99841 * 3 2 1 5 5 C 1.53006 * 109.47004 * 295.00238 * 3 2 1 6 6 C 1.50698 * 109.46898 * 175.00372 * 3 2 1 7 7 O 1.21274 * 120.00128 * 25.00114 * 6 3 2 8 8 N 1.34778 * 119.99532 * 204.99871 * 6 3 2 9 9 C 1.48321 * 128.20752 * 359.68330 * 8 6 3 10 10 C 1.53995 * 104.57707 * 221.86707 * 9 8 6 11 11 H 1.09000 * 112.89815 * 97.90491 * 10 9 8 12 12 C 1.55911 * 108.94706 * 224.42286 * 10 9 8 13 13 N 1.48724 * 104.36684 * 136.68941 * 12 10 9 14 14 C 1.46904 * 111.00079 * 198.75897 * 13 12 10 15 15 C 1.50700 * 109.47004 * 284.53336 * 14 13 12 16 16 O 1.21287 * 120.00193 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00176 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99855 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00021 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00061 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47294 * 60.00063 * 22 20 18 24 24 H 1.48506 * 109.47254 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47096 * 300.00019 * 22 20 18 26 26 C 1.48729 * 103.49996 * 317.89863 * 13 12 10 27 27 C 1.54400 * 104.34674 * 41.79692 * 26 13 12 28 28 H 1.09008 * 112.56750 * 98.13258 * 27 26 13 29 29 C 1.48323 * 128.20166 * 179.97438 * 8 6 3 30 30 H 1.09001 * 109.47264 * 299.99851 * 1 2 3 31 31 H 1.09004 * 109.47230 * 59.99615 * 1 2 3 32 32 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 34 34 H 1.08993 * 109.46955 * 300.00150 * 5 3 2 35 35 H 1.09000 * 109.47050 * 59.99979 * 5 3 2 36 36 H 1.09004 * 110.45118 * 340.61843 * 9 8 6 37 37 H 1.08999 * 110.45550 * 103.17686 * 9 8 6 38 38 H 1.09008 * 110.70284 * 17.83996 * 12 10 9 39 39 H 1.08998 * 110.29624 * 255.34342 * 12 10 9 40 40 H 1.09005 * 109.46936 * 44.52905 * 14 13 12 41 41 H 1.08999 * 109.47403 * 164.52807 * 14 13 12 42 42 H 0.97008 * 119.99904 * 359.97438 * 17 15 14 43 43 H 0.96993 * 119.99799 * 180.02562 * 21 20 18 44 44 H 1.09001 * 110.45306 * 283.08441 * 26 13 12 45 45 H 1.08992 * 110.56557 * 160.57112 * 26 13 12 46 46 H 1.09000 * 110.45143 * 256.81992 * 29 8 6 47 47 H 1.08998 * 110.44980 * 19.25458 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 6 3.7142 1.9384 0.1237 7 8 4.4584 1.0530 -0.2410 8 7 4.2217 3.0754 0.6398 9 6 3.4881 4.2668 1.1322 10 6 4.2951 5.4659 0.6007 11 1 3.8773 5.8861 -0.3142 12 6 4.4500 6.5174 1.7413 13 7 5.8702 6.9502 1.6539 14 6 6.3035 7.5899 2.9032 15 6 5.7250 8.9792 2.9831 16 8 5.0214 9.3956 2.0872 17 7 5.9903 9.7594 4.0496 18 6 5.4645 11.0234 4.1221 19 1 4.8380 11.3941 3.3243 20 6 5.7376 11.8275 5.2219 21 7 6.5004 11.3765 6.1924 22 14 5.0217 13.5500 5.3203 23 1 3.5390 13.4723 5.2921 24 1 5.4591 14.1965 6.5837 25 1 5.4975 14.3506 4.1635 26 6 6.6069 5.6790 1.4225 27 6 5.7359 4.9119 0.4043 28 1 6.0936 5.0228 -0.6195 29 6 5.6463 3.4341 0.8443 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.9876 3.4637 -1.3072 34 1 2.2353 1.9149 -2.1491 35 1 0.6635 2.2779 -1.3969 36 1 2.4749 4.2831 0.7306 37 1 3.4672 4.2777 2.2219 38 1 4.2487 6.0650 2.7125 39 1 3.7829 7.3622 1.5699 40 1 5.9551 7.0019 3.7524 41 1 7.3918 7.6478 2.9235 42 1 6.5534 9.4265 4.7660 43 1 6.6907 11.9377 6.9602 44 1 6.6937 5.1147 2.3511 45 1 7.5938 5.8789 1.0055 46 1 5.9176 3.3323 1.8951 47 1 6.2891 2.8100 0.2236 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501206381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:21 Heat of formation + Delta-G solvation = -46.875523 kcal Electronic energy + Delta-G solvation = -27496.942377 eV Core-core repulsion = 23613.441309 eV Total energy + Delta-G solvation = -3883.501068 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79752 -39.17317 -37.97641 -35.78128 -33.95161 -33.74174 -31.60366 -31.11958 -30.69465 -29.22466 -27.50375 -26.10930 -25.44811 -24.41551 -23.31457 -21.47313 -19.87664 -19.67181 -19.06195 -17.85989 -17.73227 -16.96185 -16.38458 -16.01043 -15.60993 -15.49431 -15.06963 -14.78267 -14.66857 -14.49879 -14.16377 -14.04710 -13.81398 -13.65037 -13.29053 -13.02618 -13.01307 -12.67784 -12.46961 -12.35236 -12.30203 -12.08955 -11.97261 -11.63860 -11.46569 -11.33512 -11.12487 -10.99761 -10.90614 -10.74132 -10.46040 -10.26166 -10.23195 -10.11817 -9.50390 -9.10172 -8.57923 -8.08070 -8.05023 -7.97310 -6.43328 -3.84212 1.03284 2.07845 2.30276 2.60083 3.18242 3.24213 3.28265 3.87198 3.87689 3.96058 4.15989 4.26674 4.34462 4.42960 4.53289 4.65712 4.69869 4.73403 4.80787 4.96538 5.01863 5.03583 5.07483 5.14626 5.20933 5.22684 5.29354 5.30894 5.48663 5.52133 5.53782 5.60581 5.67425 5.74039 5.78482 5.82110 5.99714 6.10586 6.23948 6.26258 6.97478 7.12284 7.16293 7.53188 7.76573 8.04102 8.60126 9.16466 9.52765 10.04706 10.74371 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.001958 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.814436 B =14295.333387 C =14894.457796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.191 6.191 3 C -0.090 4.090 4 H 0.107 0.893 5 C -0.142 4.142 6 C 0.558 3.442 7 O -0.521 6.521 8 N -0.620 5.620 9 C 0.100 3.900 10 C -0.100 4.100 11 H 0.100 0.900 12 C 0.043 3.957 13 N -0.479 5.479 14 C 0.033 3.967 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.034 3.966 27 C -0.100 4.100 28 H 0.098 0.902 29 C 0.110 3.890 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.047 0.953 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -19.838 -9.266 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.034 5.966 3 C -0.221 4.221 4 H 0.125 0.875 5 C -0.201 4.201 6 C 0.344 3.656 7 O -0.397 6.397 8 N -0.355 5.355 9 C -0.023 4.023 10 C -0.120 4.120 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.203 5.203 14 C -0.099 4.099 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.095 4.095 27 C -0.120 4.120 28 H 0.116 0.884 29 C -0.013 4.013 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.432 -20.526 -10.331 24.151 hybrid contribution -0.938 1.310 1.484 2.190 sum -8.371 -19.215 -8.847 22.750 Atomic orbital electron populations 1.23556 0.95337 1.06762 1.05058 1.87417 1.05250 1.06028 1.97871 1.23295 0.96899 0.98311 1.03640 0.87526 1.22003 1.01968 1.01356 0.94818 1.19200 0.88678 0.80722 0.76967 1.90752 1.60318 1.40118 1.48498 1.49048 1.08763 1.15822 1.61823 1.22693 0.96422 0.83650 0.99490 1.23160 0.94827 0.94260 0.99731 0.88123 1.23581 0.91893 0.97732 0.95330 1.65434 1.02585 1.19484 1.32759 1.22065 1.01161 0.95822 0.90817 1.19685 0.86183 0.86786 0.84348 1.90508 1.41649 1.74713 1.39223 1.41862 1.45472 1.14008 1.18897 1.19634 1.28061 0.89551 1.05577 0.87994 1.25260 0.97101 1.00255 0.95370 1.69603 1.37299 1.38162 1.09312 0.85922 0.79237 0.81614 0.77463 1.19949 1.20999 1.19887 1.23328 0.98313 0.90560 0.97274 1.22951 0.95501 0.92993 1.00535 0.88358 1.22654 0.82068 0.95095 1.01437 0.90436 0.90252 0.87705 0.90913 0.90470 0.91130 0.90087 0.90195 0.93860 0.88362 0.93110 0.89226 0.77531 0.91833 0.93519 0.89729 0.90543 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 10.45 101.05 1.06 0.29 16 2 S -0.19 -1.86 21.10 -107.50 -2.27 -4.13 16 3 C -0.09 -0.78 2.48 -27.88 -0.07 -0.85 16 4 H 0.11 0.75 7.32 -51.92 -0.38 0.37 16 5 C -0.14 -0.98 9.04 37.16 0.34 -0.65 16 6 C 0.56 6.48 7.05 -10.99 -0.08 6.40 16 7 O -0.52 -8.03 16.42 5.56 0.09 -7.94 16 8 N -0.62 -6.25 3.31 -169.22 -0.56 -6.81 16 9 C 0.10 0.85 6.26 -2.52 -0.02 0.83 16 10 C -0.10 -1.02 4.23 -87.15 -0.37 -1.39 16 11 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 12 C 0.04 0.58 5.50 -1.26 -0.01 0.57 16 13 N -0.48 -7.30 4.99 -230.08 -1.15 -8.44 16 14 C 0.03 0.56 5.34 -4.97 -0.03 0.53 16 15 C 0.44 10.14 7.64 -10.98 -0.08 10.06 16 16 O -0.58 -15.11 14.85 5.55 0.08 -15.03 16 17 N -0.57 -13.98 5.29 -10.96 -0.06 -14.04 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 20 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 21 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 22 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.03 0.38 5.95 -2.08 -0.01 0.37 16 27 C -0.10 -1.00 4.13 -87.73 -0.36 -1.36 16 28 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 29 C 0.11 1.07 6.59 -2.28 -0.02 1.06 16 30 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.36 7.14 -51.92 -0.37 -0.01 16 32 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.46 7.59 -51.93 -0.39 0.06 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.36 6.92 -51.93 -0.36 0.00 16 36 H 0.08 0.53 6.53 -51.93 -0.34 0.20 16 37 H 0.08 0.65 7.19 -51.93 -0.37 0.28 16 38 H 0.04 0.54 6.86 -51.92 -0.36 0.19 16 39 H 0.10 1.61 7.25 -51.93 -0.38 1.23 16 40 H 0.05 0.77 7.77 -51.93 -0.40 0.36 16 41 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 42 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.05 0.48 7.05 -51.93 -0.37 0.11 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.08 0.70 7.18 -51.93 -0.37 0.33 16 47 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -33.46 386.68 -9.51 -42.97 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.29 Total: 7.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 0.11 Total: 8.02 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -1.04 Total: -52.76 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.17 Total: -22.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.86 SS G_CDS: -2.27 Total: -4.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.46 -9.51 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501206381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.906 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds