Wall clock time and date at job start Wed Apr 1 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47442 * 110.99933 * 2 1 4 4 C 1.54316 * 107.23433 * 123.25666 * 3 2 1 5 5 C 1.55135 * 103.02077 * 22.28171 * 4 3 2 6 6 C 1.47847 * 110.99769 * 120.83911 * 2 1 3 7 7 H 1.08996 * 110.37606 * 332.58067 * 6 2 1 8 8 C 1.50702 * 110.37142 * 94.81016 * 6 2 1 9 9 O 1.21282 * 120.00264 * 18.54424 * 8 6 2 10 10 N 1.34781 * 119.99654 * 198.54357 * 8 6 2 11 11 C 1.46503 * 119.99845 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.31004 * 120.00046 * 125.00109 * 12 11 10 14 14 C 1.50702 * 120.00164 * 179.72776 * 13 12 11 15 15 N 1.46494 * 109.47170 * 124.99896 * 14 13 12 16 16 C 1.34780 * 119.99985 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00082 * 179.97438 * 16 15 14 19 19 S 1.81007 * 109.46992 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99746 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00117 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99494 * 179.97438 * 20 19 18 23 23 N 1.31638 * 120.00492 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99608 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46896 * 90.00510 * 24 22 20 26 26 H 1.48505 * 109.47009 * 209.99752 * 24 22 20 27 27 H 1.48498 * 109.47120 * 330.00211 * 24 22 20 28 28 H 1.08993 * 109.47488 * 299.16004 * 1 2 3 29 29 H 1.08998 * 109.47298 * 59.16357 * 1 2 3 30 30 H 1.09000 * 109.47137 * 179.15716 * 1 2 3 31 31 H 1.08998 * 109.88502 * 242.66380 * 3 2 1 32 32 H 1.08996 * 109.88593 * 3.84761 * 3 2 1 33 33 H 1.09002 * 110.70442 * 140.66531 * 4 3 2 34 34 H 1.09001 * 110.70327 * 263.72435 * 4 3 2 35 35 H 1.09000 * 110.99484 * 206.25593 * 5 4 3 36 36 H 1.09000 * 110.99247 * 82.43571 * 5 4 3 37 37 H 0.96995 * 119.99996 * 0.02562 * 10 8 6 38 38 H 1.08999 * 109.47023 * 59.99957 * 11 10 8 39 39 H 1.08997 * 109.47180 * 300.00234 * 11 10 8 40 40 H 1.08000 * 120.00563 * 305.00166 * 12 11 10 41 41 H 1.08005 * 119.99846 * 0.02562 * 13 12 11 42 42 H 1.09003 * 109.46806 * 245.00403 * 14 13 12 43 43 H 1.08997 * 109.46799 * 4.99500 * 14 13 12 44 44 H 0.97000 * 120.00461 * 359.97438 * 15 14 13 45 45 H 1.08998 * 109.46942 * 299.99639 * 18 16 15 46 46 H 1.08998 * 109.47076 * 60.00555 * 18 16 15 47 47 H 0.96991 * 119.99564 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3047 0.0445 1.5439 6 6 1.9988 -0.7076 1.1851 7 1 1.2880 -0.6518 2.0096 8 6 2.2974 -2.1456 0.8475 9 8 2.4209 -2.4836 -0.3107 10 7 2.4271 -3.0561 1.8328 11 6 2.7168 -4.4542 1.5046 12 6 2.8112 -5.2592 2.7750 13 6 2.0634 -6.3231 2.9335 14 6 2.1622 -7.1316 4.2014 15 7 0.8342 -7.2532 4.8078 16 6 0.6786 -7.9396 5.9572 17 8 1.6379 -8.4569 6.4892 18 6 -0.6874 -8.0642 6.5814 19 16 -0.5686 -9.0355 8.1041 20 6 -2.2573 -9.0233 8.6073 21 1 -2.9950 -8.5085 8.0098 22 6 -2.6391 -9.6754 9.7715 23 7 -1.7400 -10.3033 10.4995 24 14 -4.4292 -9.6619 10.3052 25 1 -5.1303 -10.8307 9.7157 26 1 -4.5046 -9.7350 11.7866 27 1 -5.0757 -8.4094 9.8378 28 1 -0.3634 0.5007 0.8973 29 1 -0.3634 0.5268 -0.8824 30 1 -0.3633 -1.0276 -0.0151 31 1 2.5696 1.5539 -0.9105 32 1 1.1755 2.0891 0.0688 33 1 3.8000 2.1034 0.9905 34 1 2.3751 1.9575 2.0684 35 1 3.5494 -0.0795 2.5988 36 1 4.1301 -0.2833 0.9120 37 1 2.3279 -2.7859 2.7590 38 1 3.6626 -4.5125 0.9659 39 1 1.9178 -4.8539 0.8802 40 1 3.4954 -4.9592 3.5549 41 1 1.3794 -6.6235 2.1534 42 1 2.5484 -8.1244 3.9700 43 1 2.8358 -6.6332 4.8985 44 1 0.0669 -6.8398 4.3821 45 1 -1.0728 -7.0714 6.8133 46 1 -1.3613 -8.5620 5.8842 47 1 -2.0069 -10.7587 11.3132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501697424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:20 Heat of formation + Delta-G solvation = -51.458137 kcal Electronic energy + Delta-G solvation = -25509.343332 eV Core-core repulsion = 21625.643547 eV Total energy + Delta-G solvation = -3883.699785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59198 -39.24361 -38.54289 -36.57203 -34.86222 -32.98947 -32.55798 -32.44720 -30.44369 -29.53589 -27.43240 -26.18193 -25.51351 -24.19287 -22.46416 -21.63066 -20.84948 -20.47370 -19.73451 -17.89970 -17.82173 -16.95610 -16.38254 -16.10750 -15.95309 -15.79852 -15.30228 -15.24359 -14.82297 -14.58556 -14.27316 -14.02305 -13.89823 -13.81319 -13.77181 -13.20162 -13.11945 -12.82411 -12.71709 -12.61757 -12.50950 -12.05735 -11.83209 -11.81008 -11.73785 -11.54540 -11.32054 -11.08159 -11.04586 -10.78546 -10.28086 -9.91544 -9.83124 -9.46746 -9.31066 -9.09049 -8.91870 -8.82134 -8.26306 -6.52496 -6.23737 -3.94583 1.47806 2.29493 2.76072 3.04707 3.06535 3.20779 3.27020 3.32135 3.57752 3.74863 3.97487 4.07566 4.18354 4.25098 4.34756 4.52788 4.57491 4.61333 4.83783 4.87465 4.94534 4.96305 5.08386 5.11476 5.15311 5.21190 5.22862 5.27066 5.29944 5.40289 5.42085 5.46566 5.54175 5.63458 5.74262 5.85751 5.95828 6.10760 6.15432 6.24958 6.31022 6.47668 6.56135 7.14213 7.57493 7.65298 7.92681 8.33130 8.55879 9.21623 10.83685 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.001508 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.834290 B =18561.901431 C =19661.517419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.513 5.513 3 C 0.043 3.957 4 C -0.141 4.141 5 C -0.116 4.116 6 C 0.053 3.947 7 H 0.078 0.922 8 C 0.520 3.480 9 O -0.515 6.515 10 N -0.731 5.731 11 C 0.151 3.849 12 C -0.165 4.165 13 C -0.141 4.141 14 C 0.147 3.853 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.401 0.599 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.399 0.601 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 23.573 -20.689 32.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.237 5.237 3 C -0.085 4.085 4 C -0.180 4.180 5 C -0.155 4.155 6 C -0.059 4.059 7 H 0.095 0.905 8 C 0.305 3.695 9 O -0.389 6.389 10 N -0.384 5.384 11 C 0.028 3.972 12 C -0.184 4.184 13 C -0.160 4.160 14 C 0.024 3.976 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.233 0.767 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.164 22.088 -20.968 32.107 hybrid contribution -3.001 1.240 0.690 3.320 sum 7.163 23.329 -20.278 31.729 Atomic orbital electron populations 1.22576 0.86844 1.02496 1.00837 1.63079 1.08213 1.13858 1.38567 1.22874 0.98135 0.88602 0.98855 1.22796 1.00385 0.96563 0.98221 1.22661 0.96034 0.94501 1.02287 1.22533 0.98177 0.92244 0.92966 0.90467 1.20388 0.76875 0.86800 0.85475 1.90712 1.48177 1.80511 1.19488 1.46022 1.73903 1.08598 1.09926 1.20312 1.01922 0.80019 0.94906 1.22927 1.00576 0.96498 0.98406 1.23072 0.98954 0.96060 0.97962 1.20298 0.85797 1.00007 0.91533 1.45979 1.10001 1.57188 1.25976 1.20342 0.91037 0.77169 0.79690 1.90709 1.41440 1.45578 1.61398 1.23530 0.95899 1.05923 1.05028 1.85406 1.12781 1.66195 1.18989 1.22869 0.93463 1.40027 1.12088 0.90911 1.24993 0.98665 0.94532 0.95375 1.70018 1.33526 1.32047 1.14670 0.86166 0.82860 0.78615 0.77843 1.20254 1.20737 1.19710 0.95262 0.90799 0.91302 0.89999 0.92219 0.90058 0.91009 0.89808 0.89884 0.76480 0.90510 0.90971 0.86144 0.86285 0.90464 0.91051 0.76701 0.89206 0.89163 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.06 0.55 0.69 16 2 N -0.51 -4.08 4.69 -232.98 -1.09 -5.17 16 3 C 0.04 0.24 6.90 -2.84 -0.02 0.22 16 4 C -0.14 -0.60 6.94 -24.91 -0.17 -0.77 16 5 C -0.12 -0.59 6.48 -24.59 -0.16 -0.75 16 6 C 0.05 0.36 2.84 -67.34 -0.19 0.17 16 7 H 0.08 0.41 7.77 -51.93 -0.40 0.00 16 8 C 0.52 4.74 7.11 -10.98 -0.08 4.66 16 9 O -0.52 -6.96 16.59 5.56 0.09 -6.87 16 10 N -0.73 -4.88 5.55 -61.47 -0.34 -5.22 16 11 C 0.15 1.07 6.11 -5.20 -0.03 1.04 16 12 C -0.16 -1.05 9.24 -36.03 -0.33 -1.39 16 13 C -0.14 -1.04 9.24 -36.03 -0.33 -1.37 16 14 C 0.15 1.55 6.11 -5.20 -0.03 1.52 16 15 N -0.74 -9.21 5.55 -61.48 -0.34 -9.55 16 16 C 0.53 9.61 7.85 -10.99 -0.09 9.52 16 17 O -0.52 -11.50 15.86 5.55 0.09 -11.42 16 18 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.03 0.16 8.09 -51.93 -0.42 -0.26 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.27 7.58 -51.93 -0.39 -0.12 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.40 1.76 8.46 -40.82 -0.35 1.42 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 40 H 0.12 0.70 7.84 -52.49 -0.41 0.29 16 41 H 0.12 0.78 7.84 -52.48 -0.41 0.37 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 44 H 0.40 3.85 8.46 -40.82 -0.35 3.50 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 46 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 409.23 15.07 6.17 6.17 Total: -1.00 -37.23 409.23 -10.13 -47.36 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.73 Total: -0.30 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.47 Total: -2.11 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -1.04 Total: -45.18 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.23 -10.13 -47.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.100 kcal (2) G-P(sol) polarization free energy of solvation -37.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds