Wall clock time and date at job start Wed Apr 1 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47442 * 110.99933 * 2 1 4 4 C 1.54316 * 107.23433 * 123.25666 * 3 2 1 5 5 C 1.55135 * 103.02077 * 22.28171 * 4 3 2 6 6 C 1.47847 * 110.99769 * 120.83911 * 2 1 3 7 7 H 1.08996 * 110.37606 * 332.58067 * 6 2 1 8 8 C 1.50702 * 110.37142 * 94.81016 * 6 2 1 9 9 O 1.21282 * 120.00264 * 18.54424 * 8 6 2 10 10 N 1.34781 * 119.99654 * 198.54357 * 8 6 2 11 11 C 1.46503 * 119.99845 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.31004 * 120.00046 * 125.00109 * 12 11 10 14 14 C 1.50702 * 120.00164 * 179.72776 * 13 12 11 15 15 N 1.46494 * 109.47170 * 124.99896 * 14 13 12 16 16 C 1.34780 * 119.99985 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00082 * 179.97438 * 16 15 14 19 19 S 1.81007 * 109.46992 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99746 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00117 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99494 * 179.97438 * 20 19 18 23 23 N 1.31638 * 120.00492 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99608 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46896 * 90.00510 * 24 22 20 26 26 H 1.48505 * 109.47009 * 209.99752 * 24 22 20 27 27 H 1.48498 * 109.47120 * 330.00211 * 24 22 20 28 28 H 1.08993 * 109.47488 * 299.16004 * 1 2 3 29 29 H 1.08998 * 109.47298 * 59.16357 * 1 2 3 30 30 H 1.09000 * 109.47137 * 179.15716 * 1 2 3 31 31 H 1.08998 * 109.88502 * 242.66380 * 3 2 1 32 32 H 1.08996 * 109.88593 * 3.84761 * 3 2 1 33 33 H 1.09002 * 110.70442 * 140.66531 * 4 3 2 34 34 H 1.09001 * 110.70327 * 263.72435 * 4 3 2 35 35 H 1.09000 * 110.99484 * 206.25593 * 5 4 3 36 36 H 1.09000 * 110.99247 * 82.43571 * 5 4 3 37 37 H 0.96995 * 119.99996 * 0.02562 * 10 8 6 38 38 H 1.08999 * 109.47023 * 59.99957 * 11 10 8 39 39 H 1.08997 * 109.47180 * 300.00234 * 11 10 8 40 40 H 1.08000 * 120.00563 * 305.00166 * 12 11 10 41 41 H 1.08005 * 119.99846 * 0.02562 * 13 12 11 42 42 H 1.09003 * 109.46806 * 245.00403 * 14 13 12 43 43 H 1.08997 * 109.46799 * 4.99500 * 14 13 12 44 44 H 0.97000 * 120.00461 * 359.97438 * 15 14 13 45 45 H 1.08998 * 109.46942 * 299.99639 * 18 16 15 46 46 H 1.08998 * 109.47076 * 60.00555 * 18 16 15 47 47 H 0.96991 * 119.99564 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3047 0.0445 1.5439 6 6 1.9988 -0.7076 1.1851 7 1 1.2880 -0.6518 2.0096 8 6 2.2974 -2.1456 0.8475 9 8 2.4209 -2.4836 -0.3107 10 7 2.4271 -3.0561 1.8328 11 6 2.7168 -4.4542 1.5046 12 6 2.8112 -5.2592 2.7750 13 6 2.0634 -6.3231 2.9335 14 6 2.1622 -7.1316 4.2014 15 7 0.8342 -7.2532 4.8078 16 6 0.6786 -7.9396 5.9572 17 8 1.6379 -8.4569 6.4892 18 6 -0.6874 -8.0642 6.5814 19 16 -0.5686 -9.0355 8.1041 20 6 -2.2573 -9.0233 8.6073 21 1 -2.9950 -8.5085 8.0098 22 6 -2.6391 -9.6754 9.7715 23 7 -1.7400 -10.3033 10.4995 24 14 -4.4292 -9.6619 10.3052 25 1 -5.1303 -10.8307 9.7157 26 1 -4.5046 -9.7350 11.7866 27 1 -5.0757 -8.4094 9.8378 28 1 -0.3634 0.5007 0.8973 29 1 -0.3634 0.5268 -0.8824 30 1 -0.3633 -1.0276 -0.0151 31 1 2.5696 1.5539 -0.9105 32 1 1.1755 2.0891 0.0688 33 1 3.8000 2.1034 0.9905 34 1 2.3751 1.9575 2.0684 35 1 3.5494 -0.0795 2.5988 36 1 4.1301 -0.2833 0.9120 37 1 2.3279 -2.7859 2.7590 38 1 3.6626 -4.5125 0.9659 39 1 1.9178 -4.8539 0.8802 40 1 3.4954 -4.9592 3.5549 41 1 1.3794 -6.6235 2.1534 42 1 2.5484 -8.1244 3.9700 43 1 2.8358 -6.6332 4.8985 44 1 0.0669 -6.8398 4.3821 45 1 -1.0728 -7.0714 6.8133 46 1 -1.3613 -8.5620 5.8842 47 1 -2.0069 -10.7587 11.3132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501697424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:20 Heat of formation + Delta-G solvation = -80.438402 kcal Electronic energy + Delta-G solvation = -25510.600011 eV Core-core repulsion = 21625.643547 eV Total energy + Delta-G solvation = -3884.956464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19386 -40.60327 -39.11167 -37.39412 -35.82652 -34.57846 -33.86907 -33.02772 -31.36513 -30.51962 -28.33449 -27.61347 -26.64825 -24.99061 -23.03051 -22.03802 -21.86983 -21.34984 -20.48278 -19.76735 -18.40525 -17.86623 -17.54921 -17.16951 -16.87226 -16.67129 -16.54088 -16.28978 -16.00240 -15.73616 -15.24744 -14.97059 -14.84259 -14.50432 -14.45956 -14.36410 -14.26662 -13.77502 -13.61707 -13.33270 -13.19119 -13.15891 -13.10478 -12.88254 -12.60968 -12.50832 -12.30828 -12.19681 -12.10086 -11.72314 -11.68050 -11.13817 -11.11376 -10.93509 -10.47229 -10.26740 -10.13344 -9.93176 -9.30701 -8.65960 -8.34146 -6.12167 0.83198 1.30207 1.42987 1.49391 1.59649 1.61521 1.62803 2.19820 2.27690 2.43657 3.00108 3.09915 3.33642 3.55621 3.57847 3.65024 3.96601 3.99573 4.02299 4.04703 4.18012 4.29342 4.34266 4.40528 4.44327 4.52220 4.52628 4.55612 4.58136 4.68672 4.76709 4.84814 4.88455 4.93624 4.96169 5.05330 5.27547 5.33678 5.38376 5.42641 5.57276 5.69308 5.85096 6.02943 6.20451 6.50997 6.59368 7.07338 7.24358 7.29619 8.75014 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.001508 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.834290 B =18561.901431 C =19661.517419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.544 5.544 3 C 0.040 3.960 4 C -0.134 4.134 5 C -0.114 4.114 6 C 0.053 3.947 7 H 0.098 0.902 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.718 5.718 11 C 0.153 3.847 12 C -0.142 4.142 13 C -0.142 4.142 14 C 0.148 3.852 15 N -0.710 5.710 16 C 0.533 3.467 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.415 0.585 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.417 0.583 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.938 25.648 -21.035 33.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.268 5.268 3 C -0.087 4.087 4 C -0.173 4.173 5 C -0.152 4.152 6 C -0.058 4.058 7 H 0.115 0.885 8 C 0.303 3.697 9 O -0.445 6.445 10 N -0.371 5.371 11 C 0.029 3.971 12 C -0.161 4.161 13 C -0.162 4.162 14 C 0.025 3.975 15 N -0.364 5.364 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.814 24.207 -21.333 33.448 hybrid contribution -2.498 0.661 0.656 2.666 sum 6.316 24.867 -20.677 32.951 Atomic orbital electron populations 1.22541 0.86422 1.01807 1.01730 1.62997 1.08920 1.15216 1.39712 1.22904 0.98727 0.87819 0.99271 1.22788 1.00517 0.96077 0.97884 1.22683 0.94567 0.94751 1.03223 1.22593 0.99443 0.90654 0.93153 0.88458 1.20905 0.75821 0.87980 0.84949 1.90686 1.50764 1.81463 1.21600 1.45924 1.72681 1.08149 1.10368 1.20247 1.01468 0.80303 0.95035 1.22895 0.99761 0.95521 0.97962 1.22843 1.00284 0.96136 0.96891 1.20372 0.84308 1.00188 0.92663 1.45724 1.11777 1.54962 1.23910 1.20071 0.89665 0.77511 0.80846 1.90699 1.42504 1.48070 1.63197 1.23376 0.97723 1.05560 1.01435 1.85582 1.13898 1.68746 1.24294 1.23215 0.93569 1.40130 1.12556 0.89857 1.26119 1.03852 0.93824 0.95320 1.70183 1.36160 1.33135 1.15274 0.84960 0.76388 0.79288 0.77380 1.19397 1.20329 1.18146 0.93699 0.90584 0.92716 0.91046 0.91069 0.89208 0.89573 0.87578 0.91625 0.74828 0.91046 0.91635 0.85034 0.85081 0.91408 0.91335 0.74592 0.87074 0.87207 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 127.69 1.17 1.45 16 2 N -0.54 -8.22 4.69 -891.03 -4.18 -12.40 16 3 C 0.04 0.41 6.90 86.65 0.60 1.01 16 4 C -0.13 -0.84 6.94 31.77 0.22 -0.62 16 5 C -0.11 -0.95 6.48 31.98 0.21 -0.74 16 6 C 0.05 0.64 2.84 44.64 0.13 0.77 16 7 H 0.10 0.76 7.77 -2.39 -0.02 0.74 16 8 C 0.52 9.00 7.11 87.66 0.62 9.63 16 9 O -0.57 -15.56 16.59 -3.03 -0.05 -15.61 16 10 N -0.72 -8.31 5.55 -466.79 -2.59 -10.90 16 11 C 0.15 1.92 6.11 85.63 0.52 2.44 16 12 C -0.14 -1.46 9.24 25.64 0.24 -1.22 16 13 C -0.14 -1.74 9.24 25.64 0.24 -1.50 16 14 C 0.15 2.85 6.11 85.63 0.52 3.37 16 15 N -0.71 -16.19 5.55 -466.79 -2.59 -18.78 16 16 C 0.53 18.76 7.85 87.66 0.69 19.45 16 17 O -0.57 -25.48 15.86 -3.04 -0.05 -25.52 16 18 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 19 S -0.15 -8.33 20.57 -56.49 -1.16 -9.50 16 20 C -0.55 -30.82 9.50 67.95 0.65 -30.18 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 24 Si 1.00 43.03 29.55 68.60 2.03 45.05 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 28 H 0.04 0.39 8.09 -2.39 -0.02 0.37 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.54 7.58 -2.39 -0.02 0.52 16 33 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.06 0.78 8.05 -2.39 -0.02 0.76 16 37 H 0.42 2.50 8.46 -92.71 -0.78 1.72 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 40 H 0.13 1.13 7.84 -2.91 -0.02 1.11 16 41 H 0.13 1.35 7.84 -2.91 -0.02 1.33 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 44 H 0.42 6.69 8.46 -92.71 -0.78 5.90 16 45 H 0.11 3.76 8.14 -2.40 -0.02 3.75 16 46 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 47 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -84.10 409.23 -2.20 -86.31 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.59 Total: 16.01 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 6.70 Total: 0.57 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -9.07 Total: -97.31 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.10 Total: -41.14 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.50 kcal Total: -84.10 -2.20 -86.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.867 kcal (2) G-P(sol) polarization free energy of solvation -84.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds