Wall clock time and date at job start Wed Apr 1 2020 01:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47441 * 110.99971 * 2 1 4 4 C 1.54318 * 107.22969 * 123.26198 * 3 2 1 5 5 C 1.55135 * 103.02184 * 22.28524 * 4 3 2 6 6 C 1.47835 * 111.00076 * 120.84671 * 2 1 3 7 7 H 1.08996 * 110.37963 * 332.57680 * 6 2 1 8 8 C 1.50702 * 110.37342 * 94.80777 * 6 2 1 9 9 O 1.21285 * 120.00308 * 18.54085 * 8 6 2 10 10 N 1.34781 * 119.99823 * 198.54626 * 8 6 2 11 11 C 1.46501 * 119.99784 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.31007 * 120.00400 * 127.00487 * 12 11 10 14 14 C 1.50695 * 119.99666 * 7.56139 * 13 12 11 15 15 N 1.46496 * 109.47317 * 127.15371 * 14 13 12 16 16 C 1.34774 * 119.99956 * 179.97438 * 15 14 13 17 17 O 1.21278 * 120.00567 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99879 * 180.02562 * 16 15 14 19 19 S 1.81006 * 109.47134 * 179.97438 * 18 16 15 20 20 C 1.76193 * 99.99757 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00854 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99748 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00027 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47330 * 89.99523 * 24 22 20 26 26 H 1.48503 * 109.46834 * 210.00062 * 24 22 20 27 27 H 1.48508 * 109.46977 * 329.99661 * 24 22 20 28 28 H 1.09007 * 109.46589 * 299.15421 * 1 2 3 29 29 H 1.09004 * 109.47352 * 59.14822 * 1 2 3 30 30 H 1.08994 * 109.47315 * 179.15563 * 1 2 3 31 31 H 1.08994 * 109.89222 * 242.66826 * 3 2 1 32 32 H 1.09001 * 109.88965 * 3.85953 * 3 2 1 33 33 H 1.09004 * 110.70749 * 140.67263 * 4 3 2 34 34 H 1.09003 * 110.70485 * 263.72698 * 4 3 2 35 35 H 1.09001 * 110.99292 * 206.26066 * 5 4 3 36 36 H 1.08994 * 110.99458 * 82.43834 * 5 4 3 37 37 H 0.97002 * 120.00032 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.47220 * 60.00054 * 11 10 8 39 39 H 1.09003 * 109.47050 * 299.99670 * 11 10 8 40 40 H 1.08000 * 120.00209 * 307.00157 * 12 11 10 41 41 H 1.07997 * 120.00128 * 187.56039 * 13 12 11 42 42 H 1.09007 * 109.47194 * 247.15625 * 14 13 12 43 43 H 1.09002 * 109.47221 * 7.15049 * 14 13 12 44 44 H 0.96999 * 120.00171 * 0.02562 * 15 14 13 45 45 H 1.08994 * 109.47317 * 299.99975 * 18 16 15 46 46 H 1.09008 * 109.47144 * 60.00015 * 18 16 15 47 47 H 0.97001 * 120.00140 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5135 1.2325 5 6 3.3048 0.0443 1.5437 6 6 1.9988 -0.7077 1.1849 7 1 1.2882 -0.6520 2.0095 8 6 2.2974 -2.1457 0.8472 9 8 2.4208 -2.4836 -0.3111 10 7 2.4271 -3.0563 1.8323 11 6 2.7168 -4.4544 1.5039 12 6 2.8113 -5.2595 2.7742 13 6 2.0923 -6.3454 2.9166 14 6 1.3023 -6.8839 1.7518 15 7 1.6338 -8.2963 1.5482 16 6 1.0435 -8.9906 0.5553 17 8 0.2374 -8.4465 -0.1693 18 6 1.3841 -10.4437 0.3462 19 16 0.4341 -11.0909 -1.0520 20 6 1.0109 -12.7557 -1.0694 21 1 1.7404 -13.0821 -0.3430 22 6 0.5285 -13.6475 -2.0173 23 7 -0.3603 -13.2496 -2.9030 24 14 1.1395 -15.4127 -2.0353 25 1 0.2681 -16.2470 -1.1693 26 1 1.1024 -15.9351 -3.4249 27 1 2.5337 -15.4591 -1.5260 28 1 -0.3633 0.5007 0.8976 29 1 -0.3634 0.5270 -0.8823 30 1 -0.3633 -1.0275 -0.0151 31 1 2.5696 1.5541 -0.9105 32 1 1.1755 2.0892 0.0690 33 1 3.8001 2.1033 0.9905 34 1 2.3753 1.9573 2.0685 35 1 3.5496 -0.0798 2.5986 36 1 4.1302 -0.2834 0.9118 37 1 2.3287 -2.7860 2.7587 38 1 3.6626 -4.5126 0.9652 39 1 1.9178 -4.8540 0.8795 40 1 3.4717 -4.9415 3.5674 41 1 2.0659 -6.8546 3.8686 42 1 0.2366 -6.7872 1.9598 43 1 1.5497 -6.3193 0.8528 44 1 2.2776 -8.7319 2.1283 45 1 2.4495 -10.5409 0.1380 46 1 1.1366 -11.0080 1.2454 47 1 -0.6977 -13.8729 -3.5653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501697425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:22 Heat of formation + Delta-G solvation = -73.348576 kcal Electronic energy + Delta-G solvation = -25900.127646 eV Core-core repulsion = 22015.478620 eV Total energy + Delta-G solvation = -3884.649026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23378 -40.65945 -39.15952 -37.65456 -35.70683 -34.58831 -33.90857 -33.02910 -31.21942 -30.55035 -27.92320 -27.54758 -26.66122 -26.02328 -23.26333 -22.05133 -21.85491 -21.20558 -20.20919 -19.56008 -18.34038 -17.97809 -17.73895 -16.96280 -16.88700 -16.82221 -16.52337 -16.37574 -16.12024 -15.67771 -15.26272 -15.06518 -14.82963 -14.59218 -14.52351 -14.34973 -14.27309 -13.99708 -13.63395 -13.47696 -13.17611 -13.16512 -13.13013 -12.88415 -12.61055 -12.51795 -12.31984 -12.09734 -11.94130 -11.72691 -11.67638 -11.14431 -11.12057 -10.92036 -10.43714 -10.27811 -10.27603 -9.81543 -9.29956 -8.67928 -8.34720 -6.13520 0.81937 1.28966 1.42854 1.48486 1.58320 1.59047 1.62239 2.16292 2.27162 2.44333 2.99426 3.09167 3.32681 3.55101 3.63297 3.64607 3.92147 3.97379 4.01683 4.05632 4.10938 4.18099 4.29228 4.38772 4.40456 4.42172 4.50042 4.53929 4.65395 4.69972 4.76286 4.88310 4.93064 4.94549 4.96042 5.05848 5.28312 5.31486 5.38814 5.41557 5.47036 5.72493 5.85996 6.03248 6.19610 6.49823 6.61145 7.06262 7.22865 7.31664 8.74628 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.001561 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.163370 B =17930.367201 C =18641.618557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.039 3.961 4 C -0.132 4.132 5 C -0.112 4.112 6 C 0.056 3.944 7 H 0.103 0.897 8 C 0.511 3.489 9 O -0.573 6.573 10 N -0.711 5.711 11 C 0.130 3.870 12 C -0.138 4.138 13 C -0.142 4.142 14 C 0.130 3.870 15 N -0.706 5.706 16 C 0.530 3.470 17 O -0.569 6.569 18 C -0.128 4.128 19 S -0.157 6.157 20 C -0.546 4.546 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.257 1.257 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.419 0.581 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 29.825 21.759 38.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.088 4.088 4 C -0.170 4.170 5 C -0.150 4.150 6 C -0.055 4.055 7 H 0.121 0.879 8 C 0.297 3.703 9 O -0.451 6.451 10 N -0.365 5.365 11 C 0.007 3.993 12 C -0.157 4.157 13 C -0.161 4.161 14 C 0.007 3.993 15 N -0.361 5.361 16 C 0.316 3.684 17 O -0.448 6.448 18 C -0.279 4.279 19 S 0.070 5.930 20 C -0.694 4.694 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.181 1.181 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.257 0.743 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.818 30.219 19.127 36.834 hybrid contribution 0.669 -1.509 1.207 2.044 sum 9.487 28.710 20.333 36.438 Atomic orbital electron populations 1.22526 0.86489 1.01542 1.01858 1.62931 1.08915 1.15472 1.40152 1.22908 0.98821 0.87627 0.99422 1.22784 1.00434 0.96037 0.97753 1.22691 0.94222 0.94638 1.03465 1.22591 0.99725 0.90122 0.93098 0.87939 1.21131 0.75843 0.88362 0.84969 1.90722 1.50682 1.81575 1.22081 1.45791 1.72740 1.07622 1.10375 1.20467 1.00934 0.81162 0.96768 1.22958 0.98659 0.96377 0.97666 1.22934 0.96367 0.98523 0.98291 1.20578 0.99740 0.80976 0.98027 1.45656 1.45717 1.11351 1.33351 1.20163 0.80127 0.88005 0.80082 1.90704 1.35610 1.71405 1.47060 1.23365 1.05343 0.95062 1.04111 1.85652 1.57506 1.11108 1.38713 1.23216 1.30004 0.95716 1.20485 0.89721 1.26166 0.94684 1.04558 0.93845 1.70195 1.29543 1.37576 1.17566 0.84922 0.79120 0.75919 0.77806 1.19179 1.20388 1.18107 0.93118 0.90795 0.93297 0.91433 0.90934 0.89176 0.89089 0.86862 0.91989 0.74417 0.91863 0.92766 0.82088 0.82641 0.91821 0.92214 0.74306 0.87121 0.86777 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.12 127.69 1.17 1.54 16 2 N -0.55 -9.97 4.69 -891.02 -4.18 -14.15 16 3 C 0.04 0.47 6.90 86.65 0.60 1.07 16 4 C -0.13 -0.87 6.94 31.77 0.22 -0.65 16 5 C -0.11 -0.99 6.48 31.98 0.21 -0.78 16 6 C 0.06 0.78 2.84 44.64 0.13 0.91 16 7 H 0.10 0.86 7.77 -2.39 -0.02 0.84 16 8 C 0.51 10.87 7.11 87.66 0.62 11.49 16 9 O -0.57 -19.35 16.59 -3.05 -0.05 -19.40 16 10 N -0.71 -10.10 5.55 -466.78 -2.59 -12.69 16 11 C 0.13 2.29 5.76 85.63 0.49 2.79 16 12 C -0.14 -1.35 9.63 25.64 0.25 -1.11 16 13 C -0.14 -1.68 9.63 25.64 0.25 -1.44 16 14 C 0.13 2.94 5.76 85.63 0.49 3.43 16 15 N -0.71 -17.88 5.55 -466.79 -2.59 -20.47 16 16 C 0.53 20.23 7.85 87.66 0.69 20.91 16 17 O -0.57 -27.79 15.86 -3.02 -0.05 -27.84 16 18 C -0.13 -5.13 6.16 71.24 0.44 -4.70 16 19 S -0.16 -8.94 20.57 -56.49 -1.16 -10.10 16 20 C -0.55 -31.64 9.50 67.96 0.65 -30.99 16 21 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -57.04 13.22 21.65 0.29 -56.76 16 24 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 28 H 0.05 0.53 8.09 -2.38 -0.02 0.51 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.65 7.58 -2.39 -0.02 0.64 16 33 H 0.09 0.45 8.14 -2.38 -0.02 0.44 16 34 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.06 0.83 8.05 -2.39 -0.02 0.81 16 37 H 0.42 2.42 8.46 -92.71 -0.78 1.63 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.33 5.29 -2.39 -0.01 1.32 16 40 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.06 1.65 5.30 -2.39 -0.01 1.64 16 44 H 0.42 7.21 8.46 -92.71 -0.78 6.43 16 45 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 46 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 47 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -91.66 404.74 -2.23 -93.90 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.58 Total: 17.78 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.66 Total: 3.64 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -9.07 Total: -104.07 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -0.10 Total: -47.24 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.10 kcal Total: -91.66 -2.23 -93.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.547 kcal (2) G-P(sol) polarization free energy of solvation -91.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds