Wall clock time and date at job start Wed Apr 1 2020 01:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34784 * 119.99864 * 2 1 4 4 O 1.21279 * 119.99925 * 179.72608 * 3 2 1 5 5 C 1.50700 * 119.99961 * 359.72839 * 3 2 1 6 6 H 1.09004 * 110.33090 * 320.79646 * 5 3 2 7 7 C 1.54906 * 110.37336 * 83.17101 * 5 3 2 8 8 C 1.55137 * 101.64989 * 155.90361 * 7 5 3 9 9 C 1.54321 * 103.02068 * 324.34510 * 8 7 5 10 10 N 1.47441 * 107.23174 * 22.28691 * 9 8 7 11 11 C 1.46898 * 110.99876 * 123.25844 * 10 9 8 12 12 C 1.46494 * 120.00444 * 179.72710 * 2 1 3 13 13 C 1.53953 * 113.73908 * 39.01300 * 12 2 1 14 14 N 1.47814 * 86.03466 * 222.08464 * 13 12 2 15 15 C 1.34781 * 134.45408 * 204.64078 * 14 13 12 16 16 O 1.21280 * 119.99679 * 179.87119 * 15 14 13 17 17 C 1.50697 * 119.99876 * 359.87334 * 15 14 13 18 18 S 1.81004 * 109.46775 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99741 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99960 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00209 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47119 * 89.99627 * 23 21 19 25 25 H 1.48493 * 109.46878 * 209.99895 * 23 21 19 26 26 H 1.48495 * 109.46789 * 329.99784 * 23 21 19 27 27 C 1.47579 * 91.05048 * 24.54932 * 14 13 12 28 28 H 1.09000 * 109.47297 * 90.00011 * 1 2 3 29 29 H 1.09002 * 109.47192 * 209.99937 * 1 2 3 30 30 H 1.08996 * 109.47342 * 329.99648 * 1 2 3 31 31 H 1.09008 * 110.98981 * 273.98874 * 7 5 3 32 32 H 1.08993 * 110.99400 * 37.80945 * 7 5 3 33 33 H 1.09001 * 110.70280 * 205.96336 * 8 7 5 34 34 H 1.08999 * 110.71009 * 82.72887 * 8 7 5 35 35 H 1.09004 * 109.88539 * 262.88016 * 9 8 7 36 36 H 1.08997 * 109.88884 * 141.69689 * 9 8 7 37 37 H 1.08996 * 109.46997 * 299.15838 * 11 10 9 38 38 H 1.08996 * 109.46960 * 59.16105 * 11 10 9 39 39 H 1.09004 * 109.47161 * 179.15680 * 11 10 9 40 40 H 1.08999 * 112.95040 * 170.60132 * 12 2 1 41 41 H 1.08992 * 113.76894 * 336.35047 * 13 12 2 42 42 H 1.09002 * 113.76524 * 107.74621 * 13 12 2 43 43 H 1.09003 * 109.47275 * 299.99767 * 17 15 14 44 44 H 1.08996 * 109.47501 * 60.00058 * 17 15 14 45 45 H 0.97005 * 120.00231 * 179.97438 * 22 21 19 46 46 H 1.08995 * 113.76655 * 221.14663 * 27 14 13 47 47 H 1.09000 * 113.87163 * 89.76917 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0050 5 6 1.3853 2.4724 -0.0062 6 1 0.5127 2.4028 -0.6557 7 6 0.9602 2.8565 1.4330 8 6 0.8089 4.3959 1.3147 9 6 1.9346 4.7814 0.3320 10 7 2.2676 3.5741 -0.4461 11 6 2.1239 3.8203 -1.8871 12 6 2.1975 -1.2686 0.0060 13 6 1.5592 -2.3571 -0.8759 14 7 1.8602 -3.2873 0.2327 15 6 2.0595 -4.6174 0.3211 16 8 2.2987 -5.1244 1.3965 17 6 1.9851 -5.4743 -0.9162 18 16 2.2960 -7.2016 -0.4734 19 6 2.1516 -7.9548 -2.0597 20 1 1.9310 -7.3499 -2.9268 21 6 2.3212 -9.3258 -2.1951 22 7 2.5905 -10.0630 -1.1384 23 14 2.1688 -10.1243 -3.8769 24 1 3.4986 -10.1451 -4.5374 25 1 1.6715 -11.5149 -3.7213 26 1 1.2149 -9.3477 -4.7089 27 6 1.8572 -2.1751 1.2028 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 0.0111 2.3900 1.6974 32 1 1.7360 2.5945 2.1524 33 1 0.9617 4.8736 2.2824 34 1 -0.1667 4.6569 0.9046 35 1 2.8107 5.1190 0.8859 36 1 1.5893 5.5699 -0.3365 37 1 1.0913 4.0900 -2.1084 38 1 2.7840 4.6353 -2.1840 39 1 2.3900 2.9183 -2.4382 40 1 3.2676 -1.1423 -0.1585 41 1 0.4932 -2.2119 -1.0504 42 1 2.1165 -2.5652 -1.7892 43 1 0.9937 -5.3856 -1.3606 44 1 2.7357 -5.1427 -1.6336 45 1 2.7087 -11.0212 -1.2329 46 1 2.6519 -2.2384 1.9460 47 1 0.8796 -1.9751 1.6415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506317878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:13 Heat of formation + Delta-G solvation = -9.871897 kcal Electronic energy + Delta-G solvation = -27206.495509 eV Core-core repulsion = 23324.599038 eV Total energy + Delta-G solvation = -3881.896471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09451 -39.96422 -38.40130 -37.35564 -35.07372 -32.59768 -32.43755 -30.76977 -29.81209 -27.95381 -27.18838 -26.27902 -26.12171 -25.44626 -23.44865 -21.74891 -21.00891 -19.33777 -19.07315 -18.01677 -17.73380 -16.97252 -16.54407 -16.34521 -15.99803 -15.52703 -15.08135 -14.85251 -14.80477 -14.42672 -14.01935 -13.95207 -13.87857 -13.57463 -13.30422 -13.16441 -12.92779 -12.83080 -12.73794 -12.57811 -12.48922 -12.32683 -11.99177 -11.84952 -11.74198 -11.65086 -11.42974 -11.28516 -11.06788 -11.02865 -10.77322 -10.03683 -9.83362 -9.43489 -9.07454 -9.01517 -8.77706 -8.64431 -8.25142 -6.51601 -6.22322 -3.93313 2.26706 2.31815 2.79343 3.06814 3.22013 3.23884 3.29438 3.49025 3.56774 3.93852 4.04642 4.18825 4.19615 4.34212 4.36476 4.47971 4.56853 4.64086 4.84019 4.86185 4.88995 4.91514 4.96977 4.99879 5.12798 5.14063 5.18278 5.21008 5.27003 5.29651 5.33812 5.44752 5.48705 5.50091 5.57348 5.66713 5.70991 5.87557 5.93762 6.11936 6.13392 6.37302 6.51737 7.00344 7.58797 7.75257 7.91711 8.34448 8.50134 9.22799 10.85114 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.001892 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.372722 B =14797.085434 C =15335.633025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.524 3.476 4 O -0.508 6.508 5 C 0.055 3.945 6 H 0.078 0.922 7 C -0.118 4.118 8 C -0.141 4.141 9 C 0.043 3.957 10 N -0.514 5.514 11 C 0.022 3.978 12 C 0.113 3.887 13 C 0.094 3.906 14 N -0.648 5.648 15 C 0.560 3.440 16 O -0.511 6.511 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.097 3.903 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.269 0.731 46 H 0.087 0.913 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 32.435 0.979 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C 0.311 3.689 4 O -0.381 6.381 5 C -0.057 4.057 6 H 0.096 0.904 7 C -0.156 4.156 8 C -0.179 4.179 9 C -0.084 4.084 10 N -0.238 5.238 11 C -0.127 4.127 12 C 0.008 3.992 13 C -0.031 4.031 14 N -0.388 5.388 15 C 0.349 3.651 16 O -0.385 6.385 17 C -0.295 4.295 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.027 4.027 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.151 0.849 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.763 31.136 2.738 31.980 hybrid contribution -1.438 0.205 -2.610 2.987 sum -8.201 31.342 0.128 32.397 Atomic orbital electron populations 1.21929 0.79446 1.03713 1.02347 1.47815 1.06897 1.05366 1.74462 1.20439 0.88110 0.84425 0.75971 1.90718 1.13637 1.86754 1.46974 1.22551 0.94011 0.90892 0.98268 0.90404 1.22700 1.02286 0.96072 0.94561 1.22797 0.98999 0.95439 1.00674 1.22871 0.98117 0.91685 0.95738 1.63054 1.51948 1.04288 1.04500 1.22567 0.99579 1.02621 0.87885 1.23219 0.98999 0.80942 0.96025 1.23605 1.01033 0.85478 0.92948 1.49785 1.72945 1.05142 1.10920 1.20021 0.75153 0.79071 0.90840 1.90722 1.46928 1.70926 1.29906 1.23478 1.04959 1.03256 0.97850 1.85417 1.92762 0.91497 1.13665 1.22852 1.56346 0.95275 0.93872 0.90915 1.24999 0.94532 0.96154 0.97913 1.70017 1.44911 1.06409 1.28890 0.86156 0.78533 0.78432 0.82312 1.20236 1.20736 1.19708 1.23497 1.02202 0.82710 0.94339 0.92077 0.90306 0.90743 0.89811 0.89730 0.90016 0.91078 0.89972 0.92258 0.95383 0.90808 0.91272 0.84904 0.89437 0.89177 0.89314 0.89219 0.92157 0.89505 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 8.52 59.84 0.51 0.83 16 2 N -0.61 -4.94 3.09 -175.75 -0.54 -5.48 16 3 C 0.52 5.25 6.96 -10.98 -0.08 5.17 16 4 O -0.51 -7.37 16.07 5.56 0.09 -7.28 16 5 C 0.05 0.39 1.86 -67.34 -0.13 0.26 16 6 H 0.08 0.41 6.86 -51.93 -0.36 0.06 16 7 C -0.12 -0.63 6.15 -24.60 -0.15 -0.78 16 8 C -0.14 -0.60 6.94 -24.91 -0.17 -0.77 16 9 C 0.04 0.25 6.90 -2.84 -0.02 0.23 16 10 N -0.51 -4.23 4.69 -232.98 -1.09 -5.32 16 11 C 0.02 0.15 9.12 60.06 0.55 0.69 16 12 C 0.11 1.13 4.40 -70.14 -0.31 0.82 16 13 C 0.09 0.94 8.07 -2.83 -0.02 0.92 16 14 N -0.65 -9.33 3.61 -178.33 -0.64 -9.98 16 15 C 0.56 11.00 8.07 -10.98 -0.09 10.91 16 16 O -0.51 -12.16 16.59 5.56 0.09 -12.07 16 17 C -0.14 -3.01 5.91 36.00 0.21 -2.80 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 C 0.10 1.10 8.35 -2.97 -0.02 1.08 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.36 6.34 -51.93 -0.33 0.03 16 30 H 0.07 0.22 5.18 -51.93 -0.27 -0.05 16 31 H 0.08 0.28 6.88 -51.92 -0.36 -0.07 16 32 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.27 7.58 -51.93 -0.39 -0.12 16 37 H 0.03 0.14 8.09 -51.93 -0.42 -0.28 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.13 1.58 7.22 -51.93 -0.37 1.21 16 41 H 0.09 0.69 6.84 -51.93 -0.36 0.34 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.08 0.79 6.83 -51.93 -0.35 0.43 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -37.90 392.37 -9.61 -47.51 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.40 Total: -3.88 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 0.48 Total: 3.54 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -1.55 Total: -46.30 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.35 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.90 -9.61 -47.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506317878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.642 kcal (2) G-P(sol) polarization free energy of solvation -37.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds