Wall clock time and date at job start Wed Apr 1 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34784 * 119.99864 * 2 1 4 4 O 1.21279 * 119.99925 * 179.72608 * 3 2 1 5 5 C 1.50700 * 119.99961 * 359.72839 * 3 2 1 6 6 H 1.09004 * 110.33090 * 320.79646 * 5 3 2 7 7 C 1.54906 * 110.37336 * 83.17101 * 5 3 2 8 8 C 1.55137 * 101.64989 * 155.90361 * 7 5 3 9 9 C 1.54321 * 103.02068 * 324.34510 * 8 7 5 10 10 N 1.47441 * 107.23174 * 22.28691 * 9 8 7 11 11 C 1.46898 * 110.99876 * 123.25844 * 10 9 8 12 12 C 1.46494 * 120.00444 * 179.72710 * 2 1 3 13 13 C 1.53953 * 113.73908 * 39.01300 * 12 2 1 14 14 N 1.47814 * 86.03466 * 222.08464 * 13 12 2 15 15 C 1.34781 * 134.45408 * 204.64078 * 14 13 12 16 16 O 1.21280 * 119.99679 * 179.87119 * 15 14 13 17 17 C 1.50697 * 119.99876 * 359.87334 * 15 14 13 18 18 S 1.81004 * 109.46775 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99741 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99960 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00209 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47119 * 89.99627 * 23 21 19 25 25 H 1.48493 * 109.46878 * 209.99895 * 23 21 19 26 26 H 1.48495 * 109.46789 * 329.99784 * 23 21 19 27 27 C 1.47579 * 91.05048 * 24.54932 * 14 13 12 28 28 H 1.09000 * 109.47297 * 90.00011 * 1 2 3 29 29 H 1.09002 * 109.47192 * 209.99937 * 1 2 3 30 30 H 1.08996 * 109.47342 * 329.99648 * 1 2 3 31 31 H 1.09008 * 110.98981 * 273.98874 * 7 5 3 32 32 H 1.08993 * 110.99400 * 37.80945 * 7 5 3 33 33 H 1.09001 * 110.70280 * 205.96336 * 8 7 5 34 34 H 1.08999 * 110.71009 * 82.72887 * 8 7 5 35 35 H 1.09004 * 109.88539 * 262.88016 * 9 8 7 36 36 H 1.08997 * 109.88884 * 141.69689 * 9 8 7 37 37 H 1.08996 * 109.46997 * 299.15838 * 11 10 9 38 38 H 1.08996 * 109.46960 * 59.16105 * 11 10 9 39 39 H 1.09004 * 109.47161 * 179.15680 * 11 10 9 40 40 H 1.08999 * 112.95040 * 170.60132 * 12 2 1 41 41 H 1.08992 * 113.76894 * 336.35047 * 13 12 2 42 42 H 1.09002 * 113.76524 * 107.74621 * 13 12 2 43 43 H 1.09003 * 109.47275 * 299.99767 * 17 15 14 44 44 H 1.08996 * 109.47501 * 60.00058 * 17 15 14 45 45 H 0.97005 * 120.00231 * 179.97438 * 22 21 19 46 46 H 1.08995 * 113.76655 * 221.14663 * 27 14 13 47 47 H 1.09000 * 113.87163 * 89.76917 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0050 5 6 1.3853 2.4724 -0.0062 6 1 0.5127 2.4028 -0.6557 7 6 0.9602 2.8565 1.4330 8 6 0.8089 4.3959 1.3147 9 6 1.9346 4.7814 0.3320 10 7 2.2676 3.5741 -0.4461 11 6 2.1239 3.8203 -1.8871 12 6 2.1975 -1.2686 0.0060 13 6 1.5592 -2.3571 -0.8759 14 7 1.8602 -3.2873 0.2327 15 6 2.0595 -4.6174 0.3211 16 8 2.2987 -5.1244 1.3965 17 6 1.9851 -5.4743 -0.9162 18 16 2.2960 -7.2016 -0.4734 19 6 2.1516 -7.9548 -2.0597 20 1 1.9310 -7.3499 -2.9268 21 6 2.3212 -9.3258 -2.1951 22 7 2.5905 -10.0630 -1.1384 23 14 2.1688 -10.1243 -3.8769 24 1 3.4986 -10.1451 -4.5374 25 1 1.6715 -11.5149 -3.7213 26 1 1.2149 -9.3477 -4.7089 27 6 1.8572 -2.1751 1.2028 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 0.0111 2.3900 1.6974 32 1 1.7360 2.5945 2.1524 33 1 0.9617 4.8736 2.2824 34 1 -0.1667 4.6569 0.9046 35 1 2.8107 5.1190 0.8859 36 1 1.5893 5.5699 -0.3365 37 1 1.0913 4.0900 -2.1084 38 1 2.7840 4.6353 -2.1840 39 1 2.3900 2.9183 -2.4382 40 1 3.2676 -1.1423 -0.1585 41 1 0.4932 -2.2119 -1.0504 42 1 2.1165 -2.5652 -1.7892 43 1 0.9937 -5.3856 -1.3606 44 1 2.7357 -5.1427 -1.6336 45 1 2.7087 -11.0212 -1.2329 46 1 2.6519 -2.2384 1.9460 47 1 0.8796 -1.9751 1.6415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506317878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:12 Heat of formation + Delta-G solvation = -38.227569 kcal Electronic energy + Delta-G solvation = -27207.725103 eV Core-core repulsion = 23324.599038 eV Total energy + Delta-G solvation = -3883.126065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93641 -40.87612 -39.36251 -38.44842 -35.89885 -34.60133 -33.04459 -32.04083 -30.63832 -28.96697 -27.85586 -27.68520 -27.14418 -26.60803 -24.21814 -22.21367 -21.78574 -20.41369 -19.97470 -19.57646 -18.66592 -18.17911 -17.54811 -17.09363 -16.88949 -16.88171 -16.38745 -16.22333 -15.90539 -15.60955 -15.19808 -14.78784 -14.59866 -14.37389 -14.23073 -14.03630 -13.93902 -13.76597 -13.69810 -13.51698 -13.18302 -13.14180 -13.06759 -12.98130 -12.89723 -12.61601 -12.47075 -12.39736 -12.24462 -12.00273 -11.75464 -11.65117 -11.15703 -11.08671 -10.74114 -10.31401 -9.86122 -9.71222 -9.25934 -8.70351 -8.35950 -6.15171 1.13953 1.39131 1.42154 1.47149 1.53295 1.55183 1.72024 2.09582 2.25818 2.98206 3.02656 3.13908 3.28746 3.45343 3.50519 3.65492 3.84577 3.87075 3.99275 4.05349 4.16148 4.23349 4.24697 4.36222 4.40193 4.43405 4.46851 4.47376 4.52660 4.55915 4.68988 4.77292 4.78870 4.85986 4.90985 4.94872 4.99310 5.02820 5.10643 5.30700 5.40302 5.43318 5.87832 6.06826 6.18419 6.33528 6.48893 7.02662 7.04992 7.19464 8.73377 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.001892 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.372722 B =14797.085434 C =15335.633025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.602 5.602 3 C 0.519 3.481 4 O -0.565 6.565 5 C 0.059 3.941 6 H 0.105 0.895 7 C -0.116 4.116 8 C -0.132 4.132 9 C 0.041 3.959 10 N -0.548 5.548 11 C 0.025 3.975 12 C 0.124 3.876 13 C 0.099 3.901 14 N -0.646 5.646 15 C 0.558 3.442 16 O -0.567 6.567 17 C -0.118 4.118 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.256 1.256 27 C 0.096 3.904 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.272 0.728 46 H 0.070 0.930 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.283 34.686 -1.028 36.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.336 5.336 3 C 0.308 3.692 4 O -0.442 6.442 5 C -0.053 4.053 6 H 0.123 0.877 7 C -0.155 4.155 8 C -0.171 4.171 9 C -0.086 4.086 10 N -0.273 5.273 11 C -0.124 4.124 12 C 0.018 3.982 13 C -0.023 4.023 14 N -0.383 5.383 15 C 0.347 3.653 16 O -0.445 6.445 17 C -0.269 4.269 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.180 1.180 27 C -0.027 4.027 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.705 33.465 0.709 34.851 hybrid contribution -0.535 -0.300 -1.948 2.042 sum -10.240 33.165 -1.239 34.732 Atomic orbital electron populations 1.22277 0.76643 1.05239 1.04154 1.47832 1.08412 1.03929 1.73382 1.21131 0.87669 0.85764 0.74660 1.90695 1.16218 1.87574 1.49736 1.22596 0.93960 0.88858 0.99855 0.87724 1.22734 1.02719 0.97182 0.92818 1.22789 0.99209 0.94405 1.00660 1.22892 0.98347 0.91280 0.96128 1.62934 1.53453 1.05502 1.05436 1.22528 1.00828 1.01887 0.87109 1.22771 0.98200 0.82046 0.95191 1.23932 1.03277 0.83189 0.91943 1.49699 1.70744 1.03985 1.13873 1.19731 0.75331 0.80689 0.89518 1.90697 1.49898 1.72561 1.31334 1.23267 1.06454 0.98399 0.98804 1.85616 1.93371 0.97835 1.15629 1.23184 1.56365 0.95945 0.93851 0.89828 1.26161 0.93739 0.96781 1.02540 1.70185 1.46044 1.06818 1.31696 0.84927 0.79022 0.77312 0.76553 1.19404 1.20211 1.18011 1.23751 1.03316 0.81375 0.94296 0.90084 0.89632 0.88502 0.87096 0.92059 0.89360 0.89044 0.91446 0.90853 0.93286 0.90781 0.92839 0.87329 0.85864 0.88444 0.87140 0.87729 0.91949 0.91153 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 8.52 127.77 1.09 1.36 16 2 N -0.60 -8.32 3.09 -828.33 -2.56 -10.88 16 3 C 0.52 9.83 6.96 87.66 0.61 10.44 16 4 O -0.57 -16.88 16.07 -3.03 -0.05 -16.93 16 5 C 0.06 0.70 1.86 44.64 0.08 0.78 16 6 H 0.11 0.67 6.86 -2.38 -0.02 0.66 16 7 C -0.12 -0.94 6.15 31.98 0.20 -0.74 16 8 C -0.13 -0.74 6.94 31.77 0.22 -0.52 16 9 C 0.04 0.41 6.90 86.65 0.60 1.01 16 10 N -0.55 -8.39 4.69 -891.02 -4.18 -12.57 16 11 C 0.02 0.29 9.12 127.69 1.17 1.46 16 12 C 0.12 2.31 4.40 46.75 0.21 2.52 16 13 C 0.10 1.72 8.07 86.44 0.70 2.41 16 14 N -0.65 -17.78 3.61 -836.49 -3.02 -20.80 16 15 C 0.56 21.98 8.07 87.66 0.71 22.69 16 16 O -0.57 -27.90 16.59 -3.03 -0.05 -27.95 16 17 C -0.12 -4.86 5.91 71.23 0.42 -4.44 16 18 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 19 C -0.55 -31.39 9.50 67.96 0.65 -30.74 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.72 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 23 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 27 C 0.10 2.08 8.35 86.48 0.72 2.80 16 28 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.09 0.36 6.34 -2.39 -0.02 0.34 16 30 H 0.10 0.07 5.18 -2.39 -0.01 0.06 16 31 H 0.11 0.27 6.88 -2.38 -0.02 0.25 16 32 H 0.06 0.80 8.05 -2.39 -0.02 0.78 16 33 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.51 7.58 -2.39 -0.02 0.49 16 37 H 0.05 0.36 8.09 -2.39 -0.02 0.34 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 2.65 7.22 -2.39 -0.02 2.63 16 41 H 0.12 1.36 6.84 -2.39 -0.02 1.34 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 44 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 46 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.11 1.82 6.83 -2.39 -0.02 1.80 16 Total: -1.00 -88.21 392.37 0.08 -88.12 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.97 Total: 10.93 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 7.83 Total: 10.21 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -9.48 Total: -100.33 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.10 Total: -44.88 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -88.21 0.08 -88.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506317878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.897 kcal (2) G-P(sol) polarization free energy of solvation -88.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds