Wall clock time and date at job start Wed Apr 1 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34782 * 119.99847 * 2 1 4 4 O 1.21281 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99635 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47210 * 312.13203 * 5 3 2 7 7 C 1.52995 * 109.47114 * 72.13156 * 5 3 2 8 8 N 1.46896 * 109.46963 * 192.13345 * 5 3 2 9 9 C 1.46843 * 111.00373 * 166.78708 * 8 5 3 10 10 C 1.50138 * 110.27691 * 174.30890 * 9 8 5 11 11 C 1.29825 * 123.28927 * 342.97867 * 10 9 8 12 12 C 1.50698 * 118.55616 * 180.34834 * 11 10 9 13 13 N 1.46496 * 109.47053 * 94.99621 * 12 11 10 14 14 C 1.34779 * 119.99859 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99767 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00073 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47169 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00097 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99813 * 359.97438 * 18 17 16 20 20 C 1.38792 * 119.99917 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99709 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00359 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47027 * 89.99749 * 22 20 18 24 24 H 1.48496 * 109.47190 * 209.99989 * 22 20 18 25 25 H 1.48496 * 109.46863 * 330.00268 * 22 20 18 26 26 C 1.50309 * 122.88819 * 0.36263 * 11 10 9 27 27 C 1.47242 * 110.99975 * 289.72054 * 8 5 3 28 28 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.47283 * 299.99668 * 1 2 3 30 30 H 1.09000 * 109.47695 * 59.99530 * 1 2 3 31 31 H 0.96997 * 120.00072 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47232 * 179.97438 * 7 5 3 33 33 H 1.09003 * 109.47240 * 299.99499 * 7 5 3 34 34 H 1.09004 * 109.47044 * 59.99945 * 7 5 3 35 35 H 1.09001 * 109.33158 * 294.56376 * 9 8 5 36 36 H 1.08999 * 109.33406 * 54.22740 * 9 8 5 37 37 H 1.07998 * 118.35551 * 162.94596 * 10 9 8 38 38 H 1.09002 * 109.46612 * 214.99811 * 12 11 10 39 39 H 1.08998 * 109.47171 * 334.99525 * 12 11 10 40 40 H 0.96997 * 120.00432 * 359.97438 * 13 12 11 41 41 H 1.09002 * 109.47425 * 299.99926 * 16 14 13 42 42 H 1.08998 * 109.47138 * 60.00118 * 16 14 13 43 43 H 0.97006 * 119.99590 * 180.02562 * 21 20 18 44 44 H 1.09007 * 109.42822 * 103.56157 * 26 11 10 45 45 H 1.08996 * 109.43129 * 223.45519 * 26 11 10 46 46 H 1.09008 * 109.63537 * 287.49970 * 27 8 5 47 47 H 1.09001 * 109.63988 * 48.11028 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0095 0.4776 0.7613 7 6 4.1553 0.7249 -1.3738 8 7 4.1357 2.5211 0.2906 9 6 5.5695 2.5054 0.6072 10 6 6.0827 3.9074 0.7658 11 6 5.4457 4.9526 0.3331 12 6 6.0638 6.3109 0.5429 13 7 6.8163 6.6951 -0.6539 14 6 7.4578 7.8797 -0.6951 15 8 7.4125 8.6274 0.2588 16 6 8.2314 8.2752 -1.9264 17 16 8.9739 9.9066 -1.6744 18 6 9.7931 10.1122 -3.2207 19 1 9.7317 9.3383 -3.9715 20 6 10.5175 11.2687 -3.4739 21 7 11.1299 11.4220 -4.6290 22 14 10.6233 12.6077 -2.1757 23 1 11.7990 12.3594 -1.3032 24 1 10.7685 13.9289 -2.8379 25 1 9.3864 12.5992 -1.3540 26 6 4.1188 4.8676 -0.3677 27 6 3.8738 3.4309 -0.8371 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 5.2453 0.7253 -1.3743 33 1 3.7919 -0.2798 -1.5898 34 1 3.7917 1.4145 -2.1356 35 1 5.7281 1.9557 1.5350 36 1 6.1120 2.0143 -0.2005 37 1 7.0289 4.0538 1.2654 38 1 5.2778 7.0429 0.7285 39 1 6.7369 6.2754 1.3994 40 1 6.8529 6.0970 -1.4167 41 1 9.0176 7.5435 -2.1123 42 1 7.5580 8.3105 -2.7828 43 1 11.6365 12.2302 -4.8058 44 1 3.3263 5.1650 0.3191 45 1 4.1205 5.5345 -1.2298 46 1 4.5462 3.1948 -1.6620 47 1 2.8389 3.3233 -1.1620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508194652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:59 Heat of formation + Delta-G solvation = -77.408677 kcal Electronic energy + Delta-G solvation = -26674.657431 eV Core-core repulsion = 22789.832346 eV Total energy + Delta-G solvation = -3884.825085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40911 -40.69933 -39.52623 -36.84811 -35.58688 -34.70150 -34.62893 -31.91542 -31.80756 -30.56959 -27.92567 -27.85485 -27.40921 -24.97570 -24.67848 -22.85516 -21.85070 -21.12446 -19.97538 -18.53893 -18.21745 -17.92535 -17.59335 -17.23285 -17.03701 -16.71484 -16.38699 -16.02520 -15.85474 -15.76266 -15.48475 -15.02591 -14.92079 -14.74027 -14.60360 -14.28006 -14.14299 -13.94471 -13.57730 -13.43363 -13.34628 -13.10589 -13.04452 -13.02021 -12.88565 -12.79146 -12.68553 -12.40977 -11.91944 -11.86865 -11.57671 -11.17128 -11.11766 -10.63143 -10.53962 -10.16688 -10.08287 -9.92113 -9.22812 -8.99961 -8.51683 -6.22590 0.89420 1.10811 1.31325 1.48091 1.55374 1.59265 1.67034 2.17678 2.24751 2.39380 2.74009 2.86594 2.98701 3.55751 3.75900 3.82585 3.88303 4.02982 4.11329 4.21019 4.25272 4.34154 4.37851 4.46071 4.47133 4.51249 4.54602 4.62412 4.65439 4.69272 4.76976 4.84962 4.91734 4.96679 5.00770 5.14584 5.21321 5.35096 5.40718 5.49430 5.70640 5.89934 6.00204 6.11162 6.12637 6.45806 6.62539 6.93583 7.17313 7.33702 8.60634 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030305 B = 0.001709 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.721493 B =16377.715139 C =16569.130996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.511 3.489 4 O -0.570 6.570 5 C 0.065 3.935 6 H 0.133 0.867 7 C -0.177 4.177 8 N -0.530 5.530 9 C 0.082 3.918 10 C -0.124 4.124 11 C -0.137 4.137 12 C 0.160 3.840 13 N -0.706 5.706 14 C 0.534 3.466 15 O -0.564 6.564 16 C -0.110 4.110 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.238 1.238 26 C -0.073 4.073 27 C 0.057 3.943 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.418 0.582 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.415 0.585 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.445 -33.134 9.575 39.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.377 5.377 3 C 0.298 3.702 4 O -0.448 6.448 5 C -0.047 4.047 6 H 0.151 0.849 7 C -0.236 4.236 8 N -0.255 5.255 9 C -0.045 4.045 10 C -0.144 4.144 11 C -0.138 4.138 12 C 0.037 3.963 13 N -0.360 5.360 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.261 4.261 17 S 0.050 5.950 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.162 1.162 26 C -0.111 4.111 27 C -0.071 4.071 28 H 0.128 0.872 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.255 0.745 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.251 0.749 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.142 -30.883 11.460 38.098 hybrid contribution 0.872 -0.688 -2.053 2.334 sum -18.270 -31.571 9.407 37.670 Atomic orbital electron populations 1.21601 0.79214 1.04006 1.01035 1.45727 1.08089 1.08704 1.75215 1.20979 0.90659 0.83639 0.74941 1.90681 1.71051 1.32942 1.50117 1.21706 0.90785 0.92049 1.00142 0.84934 1.22372 1.02994 1.03083 0.95179 1.62263 1.16332 1.07267 1.39603 1.21134 0.86325 0.94488 1.02543 1.22403 0.99552 0.93917 0.98482 1.20809 0.97036 0.93307 1.02652 1.20305 0.94543 0.94124 0.87354 1.45804 1.51843 1.18676 1.19634 1.20000 0.78746 0.81500 0.87757 1.90693 1.62591 1.52601 1.38395 1.23262 1.02855 1.00231 0.99742 1.84732 1.65543 1.21343 1.23367 1.22463 1.36482 1.08027 1.00743 0.91906 1.25549 0.93380 0.99664 0.97293 1.70019 1.32526 1.28968 1.23900 0.85871 0.81225 0.79369 0.79935 1.18624 1.18282 1.16216 1.20394 0.94195 0.96884 0.99601 1.22216 1.01552 0.91721 0.91564 0.87192 0.93695 0.93611 0.74493 0.90021 0.89265 0.93069 0.87632 0.91191 0.85751 0.92279 0.91445 0.74866 0.86721 0.86884 0.91364 0.91636 0.90667 0.93575 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.70 127.77 1.37 1.99 16 2 N -0.72 -5.20 5.71 -484.50 -2.77 -7.97 16 3 C 0.51 7.39 6.90 87.66 0.60 7.99 16 4 O -0.57 -14.09 14.28 -3.03 -0.04 -14.14 16 5 C 0.06 0.60 2.71 44.17 0.12 0.72 16 6 H 0.13 0.50 8.04 -2.39 -0.02 0.48 16 7 C -0.18 -1.02 8.37 71.98 0.60 -0.41 16 8 N -0.53 -7.71 4.43 -880.01 -3.90 -11.61 16 9 C 0.08 0.87 5.50 85.39 0.47 1.34 16 10 C -0.12 -1.83 9.50 26.68 0.25 -1.58 16 11 C -0.14 -2.52 5.26 -15.40 -0.08 -2.60 16 12 C 0.16 3.74 5.72 85.63 0.49 4.23 16 13 N -0.71 -17.71 5.55 -466.80 -2.59 -20.30 16 14 C 0.53 18.93 7.85 87.66 0.69 19.61 16 15 O -0.56 -24.91 15.86 -3.05 -0.05 -24.96 16 16 C -0.11 -4.21 6.16 71.23 0.44 -3.77 16 17 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 18 C -0.53 -31.12 10.04 67.95 0.68 -30.44 16 19 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 20 C 0.05 2.76 5.50 84.86 0.47 3.22 16 21 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 22 Si 0.91 45.47 27.74 68.60 1.90 47.38 16 23 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 26 C -0.07 -1.42 6.04 29.76 0.18 -1.24 16 27 C 0.06 0.98 4.02 86.27 0.35 1.33 16 28 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.42 -0.13 8.83 -92.71 -0.82 -0.95 16 32 H 0.08 0.34 6.71 -2.39 -0.02 0.33 16 33 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.05 0.50 6.59 -2.39 -0.02 0.49 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.54 6.57 -2.39 -0.02 0.52 16 37 H 0.12 1.67 7.81 -2.91 -0.02 1.64 16 38 H 0.06 1.56 8.12 -2.39 -0.02 1.55 16 39 H 0.07 1.65 7.85 -2.39 -0.02 1.63 16 40 H 0.41 7.96 8.46 -92.71 -0.78 7.17 16 41 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 42 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 43 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 44 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.05 0.69 6.98 -2.38 -0.02 0.67 16 47 H 0.08 1.66 5.82 -2.39 -0.01 1.65 16 Total: -1.00 -82.85 392.69 -2.21 -85.06 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -0.65 Total: 12.01 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 6.63 Total: 0.39 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -8.95 Total: -95.64 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.09 Total: -39.09 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -82.85 -2.21 -85.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508194652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.647 kcal (2) G-P(sol) polarization free energy of solvation -82.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds