Wall clock time and date at job start Wed Apr 1 2020 00:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99766 * 2 1 4 4 O 1.21277 * 120.00165 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99761 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47397 * 33.23048 * 5 3 2 7 7 C 1.52997 * 109.47549 * 273.22947 * 5 3 2 8 8 N 1.46901 * 109.47112 * 153.23114 * 5 3 2 9 9 C 1.46757 * 111.14903 * 170.52910 * 8 5 3 10 10 C 1.50147 * 110.42425 * 174.11199 * 9 8 5 11 11 C 1.29825 * 123.28311 * 343.08406 * 10 9 8 12 12 C 1.50696 * 118.54898 * 180.37174 * 11 10 9 13 13 N 1.46504 * 109.47040 * 95.02703 * 12 11 10 14 14 C 1.34776 * 119.99899 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00396 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99640 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.46764 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99994 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99726 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00332 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47239 * 89.99561 * 22 20 18 24 24 H 1.48501 * 109.47044 * 210.00064 * 22 20 18 25 25 H 1.48502 * 109.46628 * 329.99914 * 22 20 18 26 26 C 1.50306 * 122.89187 * 0.39469 * 11 10 9 27 27 C 1.47246 * 110.99892 * 293.62804 * 8 5 3 28 28 H 1.08995 * 109.47379 * 59.99829 * 1 2 3 29 29 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46592 * 299.99144 * 1 2 3 31 31 H 0.96999 * 119.99770 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46853 * 300.00433 * 7 5 3 33 33 H 1.08999 * 109.46900 * 59.99995 * 7 5 3 34 34 H 1.08996 * 109.47456 * 179.97438 * 7 5 3 35 35 H 1.09004 * 109.15297 * 53.88823 * 9 8 5 36 36 H 1.09007 * 109.23975 * 294.39045 * 9 8 5 37 37 H 1.07998 * 118.35766 * 163.05866 * 10 9 8 38 38 H 1.08999 * 109.46724 * 215.01890 * 12 11 10 39 39 H 1.08990 * 109.47571 * 335.02119 * 12 11 10 40 40 H 0.97000 * 120.00088 * 359.97438 * 13 12 11 41 41 H 1.08999 * 109.47064 * 299.99488 * 16 14 13 42 42 H 1.08999 * 109.47052 * 59.99863 * 16 14 13 43 43 H 0.97003 * 119.99771 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.42787 * 223.40422 * 26 11 10 45 45 H 1.09002 * 109.42851 * 103.55519 * 26 11 10 46 46 H 1.08996 * 109.63577 * 48.11099 * 27 8 5 47 47 H 1.08999 * 109.63498 * 287.70602 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0090 0.3077 -0.5641 7 6 4.1565 1.0856 1.4393 8 7 4.1353 2.4039 -0.6243 9 6 5.5847 2.5493 -0.4459 10 6 6.0898 3.7398 -1.2088 11 6 5.4146 4.3187 -2.1546 12 6 6.0282 5.5026 -2.8565 13 7 6.6998 5.0519 -4.0780 14 6 7.3232 5.9442 -4.8728 15 8 7.3278 7.1204 -4.5770 16 6 8.0145 5.4804 -6.1290 17 16 8.7500 6.9027 -6.9730 18 6 9.4700 6.0946 -8.3634 19 1 9.3717 5.0252 -8.4770 20 6 10.1626 6.8326 -9.3132 21 7 10.2819 8.1362 -9.1750 22 14 10.9252 5.9761 -10.7877 23 1 9.9414 5.9340 -11.8993 24 1 12.1330 6.7221 -11.2235 25 1 11.3074 4.5910 -10.4124 26 6 4.0478 3.8603 -2.5799 27 6 3.7912 2.4452 -2.0554 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 0.8901 31 1 1.9500 -0.8401 -0.0004 32 1 3.7933 1.9451 2.0028 33 1 3.7934 0.1680 1.9021 34 1 5.2465 1.0852 1.4389 35 1 6.0818 1.6500 -0.8098 36 1 5.8049 2.6796 0.6137 37 1 7.0632 4.1345 -0.9579 38 1 5.2466 6.2173 -3.1142 39 1 6.7538 5.9796 -2.1978 40 1 6.6958 4.1113 -4.3149 41 1 8.7965 4.7663 -5.8709 42 1 7.2891 5.0028 -6.7877 43 1 10.7662 8.6520 -9.8386 44 1 3.9878 3.8601 -3.6682 45 1 3.2960 4.5385 -2.1761 46 1 2.7394 2.1910 -2.1867 47 1 4.4108 1.7341 -2.6017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508194658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:02 Heat of formation + Delta-G solvation = -49.101780 kcal Electronic energy + Delta-G solvation = -26545.073989 eV Core-core repulsion = 22661.476383 eV Total energy + Delta-G solvation = -3883.597606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70160 -39.41097 -38.64959 -35.87715 -35.00165 -33.62333 -32.41510 -31.54894 -30.81473 -29.28456 -27.57722 -26.64217 -25.46264 -24.42490 -23.22927 -22.34119 -20.62296 -20.35252 -18.33440 -17.83907 -17.66386 -16.95993 -16.24044 -16.12817 -15.88451 -15.55602 -15.22333 -14.93616 -14.81956 -14.79148 -14.44759 -13.90778 -13.87716 -13.64087 -13.44876 -13.16783 -12.99316 -12.79364 -12.68516 -12.64878 -12.56302 -12.49560 -12.15618 -12.03387 -11.66843 -11.19589 -11.05436 -11.01285 -10.81767 -10.72956 -10.13051 -9.80684 -9.61203 -9.57203 -9.08772 -9.05793 -8.83642 -8.70789 -8.21432 -6.48178 -6.20314 -3.90697 1.80803 2.20675 2.59846 3.12959 3.14090 3.22995 3.29417 3.36638 3.41484 3.86400 4.15627 4.21630 4.32653 4.43386 4.50813 4.60156 4.73077 4.86697 4.92307 4.98624 5.01872 5.05224 5.07312 5.14702 5.18581 5.21890 5.29237 5.32289 5.48925 5.51446 5.59365 5.61731 5.70947 5.84911 5.87986 5.89716 5.91744 6.07849 6.15925 6.53637 6.57463 6.63445 6.74176 7.00050 7.60726 7.76083 7.81315 8.36463 8.65472 9.24866 10.87109 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.001689 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.330215 B =16578.049274 C =16943.846858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.741 5.741 3 C 0.515 3.485 4 O -0.511 6.511 5 C 0.066 3.934 6 H 0.060 0.940 7 C -0.146 4.146 8 N -0.512 5.512 9 C 0.085 3.915 10 C -0.141 4.141 11 C -0.123 4.123 12 C 0.155 3.845 13 N -0.734 5.734 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.076 4.076 27 C 0.054 3.946 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 -22.514 21.793 35.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.299 3.701 4 O -0.384 6.384 5 C -0.046 4.046 6 H 0.078 0.922 7 C -0.203 4.203 8 N -0.237 5.237 9 C -0.042 4.042 10 C -0.161 4.161 11 C -0.124 4.124 12 C 0.032 3.968 13 N -0.389 5.389 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.113 4.113 27 C -0.073 4.073 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.752 -19.159 22.454 33.939 hybrid contribution 1.050 -3.504 -1.794 4.074 sum -15.703 -22.663 20.660 34.453 Atomic orbital electron populations 1.21529 0.79398 1.02216 1.02460 1.45864 1.07871 1.08687 1.76969 1.20509 0.89666 0.83715 0.76186 1.90742 1.69783 1.31039 1.46836 1.21573 0.92125 0.92780 0.98095 0.92192 1.21861 1.02061 1.03146 0.93254 1.62079 1.13484 1.34017 1.14152 1.21028 0.86295 0.96047 1.00833 1.22139 0.99860 0.97249 0.96829 1.21042 0.96262 0.97410 0.97639 1.20274 0.96405 0.94142 0.86000 1.46048 1.57212 1.11016 1.24615 1.20324 0.77873 0.85913 0.84207 1.90705 1.58758 1.16952 1.72783 1.23528 1.02756 1.06891 0.97151 1.85409 1.67419 1.05703 1.24812 1.22871 1.40066 0.96143 1.09310 0.90954 1.24993 0.95636 0.94892 0.98078 1.70024 1.39721 1.05357 1.35158 0.86168 0.78627 0.79254 0.81444 1.20285 1.20745 1.19728 1.20454 0.94560 0.95834 1.00500 1.22210 1.00957 0.97242 0.86911 0.92169 0.90653 0.92189 0.76649 0.90699 0.91596 0.90856 0.93408 0.88974 0.86412 0.90982 0.91122 0.76923 0.89289 0.89276 0.92192 0.90299 0.89505 0.90481 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.70 59.85 0.64 1.03 16 2 N -0.74 -3.66 5.71 -67.08 -0.38 -4.04 16 3 C 0.51 4.23 5.91 -10.99 -0.06 4.17 16 4 O -0.51 -6.55 16.11 5.56 0.09 -6.46 16 5 C 0.07 0.43 2.46 -68.87 -0.17 0.26 16 6 H 0.06 0.27 8.12 -51.93 -0.42 -0.15 16 7 C -0.15 -0.70 8.61 37.16 0.32 -0.38 16 8 N -0.51 -4.37 4.25 -229.58 -0.97 -5.34 16 9 C 0.08 0.62 4.79 -5.32 -0.03 0.60 16 10 C -0.14 -1.26 9.50 -35.96 -0.34 -1.60 16 11 C -0.12 -1.24 5.26 -100.93 -0.53 -1.77 16 12 C 0.16 1.95 5.72 -5.19 -0.03 1.93 16 13 N -0.73 -10.16 5.55 -61.47 -0.34 -10.50 16 14 C 0.53 10.13 7.85 -10.98 -0.09 10.04 16 15 O -0.52 -12.07 15.86 5.56 0.09 -11.98 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.08 -0.74 6.04 -28.03 -0.17 -0.91 16 27 C 0.05 0.48 5.34 -3.59 -0.02 0.46 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.40 0.75 8.83 -40.82 -0.36 0.39 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.28 6.45 -51.93 -0.34 -0.06 16 35 H 0.05 0.30 8.12 -51.93 -0.42 -0.12 16 36 H 0.09 0.58 6.56 -51.93 -0.34 0.24 16 37 H 0.12 1.00 7.81 -52.49 -0.41 0.59 16 38 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 39 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 40 H 0.40 4.42 8.46 -40.82 -0.35 4.08 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 0.74 6.72 -51.93 -0.35 0.39 16 47 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 LS Contribution 400.00 15.07 6.03 6.03 Total: -1.00 -37.82 400.00 -9.63 -47.45 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.58 Total: -0.02 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.06 Total: -2.15 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.97 Total: -45.48 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.82 -9.63 -47.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508194658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.650 kcal (2) G-P(sol) polarization free energy of solvation -37.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds