Wall clock time and date at job start Wed Apr 1 2020 00:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99766 * 2 1 4 4 O 1.21277 * 120.00165 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99761 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47397 * 33.23048 * 5 3 2 7 7 C 1.52997 * 109.47549 * 273.22947 * 5 3 2 8 8 N 1.46901 * 109.47112 * 153.23114 * 5 3 2 9 9 C 1.46757 * 111.14903 * 170.52910 * 8 5 3 10 10 C 1.50147 * 110.42425 * 174.11199 * 9 8 5 11 11 C 1.29825 * 123.28311 * 343.08406 * 10 9 8 12 12 C 1.50696 * 118.54898 * 180.37174 * 11 10 9 13 13 N 1.46504 * 109.47040 * 95.02703 * 12 11 10 14 14 C 1.34776 * 119.99899 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00396 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99640 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.46764 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99994 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99726 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00332 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47239 * 89.99561 * 22 20 18 24 24 H 1.48501 * 109.47044 * 210.00064 * 22 20 18 25 25 H 1.48502 * 109.46628 * 329.99914 * 22 20 18 26 26 C 1.50306 * 122.89187 * 0.39469 * 11 10 9 27 27 C 1.47246 * 110.99892 * 293.62804 * 8 5 3 28 28 H 1.08995 * 109.47379 * 59.99829 * 1 2 3 29 29 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46592 * 299.99144 * 1 2 3 31 31 H 0.96999 * 119.99770 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46853 * 300.00433 * 7 5 3 33 33 H 1.08999 * 109.46900 * 59.99995 * 7 5 3 34 34 H 1.08996 * 109.47456 * 179.97438 * 7 5 3 35 35 H 1.09004 * 109.15297 * 53.88823 * 9 8 5 36 36 H 1.09007 * 109.23975 * 294.39045 * 9 8 5 37 37 H 1.07998 * 118.35766 * 163.05866 * 10 9 8 38 38 H 1.08999 * 109.46724 * 215.01890 * 12 11 10 39 39 H 1.08990 * 109.47571 * 335.02119 * 12 11 10 40 40 H 0.97000 * 120.00088 * 359.97438 * 13 12 11 41 41 H 1.08999 * 109.47064 * 299.99488 * 16 14 13 42 42 H 1.08999 * 109.47052 * 59.99863 * 16 14 13 43 43 H 0.97003 * 119.99771 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.42787 * 223.40422 * 26 11 10 45 45 H 1.09002 * 109.42851 * 103.55519 * 26 11 10 46 46 H 1.08996 * 109.63577 * 48.11099 * 27 8 5 47 47 H 1.08999 * 109.63498 * 287.70602 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0090 0.3077 -0.5641 7 6 4.1565 1.0856 1.4393 8 7 4.1353 2.4039 -0.6243 9 6 5.5847 2.5493 -0.4459 10 6 6.0898 3.7398 -1.2088 11 6 5.4146 4.3187 -2.1546 12 6 6.0282 5.5026 -2.8565 13 7 6.6998 5.0519 -4.0780 14 6 7.3232 5.9442 -4.8728 15 8 7.3278 7.1204 -4.5770 16 6 8.0145 5.4804 -6.1290 17 16 8.7500 6.9027 -6.9730 18 6 9.4700 6.0946 -8.3634 19 1 9.3717 5.0252 -8.4770 20 6 10.1626 6.8326 -9.3132 21 7 10.2819 8.1362 -9.1750 22 14 10.9252 5.9761 -10.7877 23 1 9.9414 5.9340 -11.8993 24 1 12.1330 6.7221 -11.2235 25 1 11.3074 4.5910 -10.4124 26 6 4.0478 3.8603 -2.5799 27 6 3.7912 2.4452 -2.0554 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 0.8901 31 1 1.9500 -0.8401 -0.0004 32 1 3.7933 1.9451 2.0028 33 1 3.7934 0.1680 1.9021 34 1 5.2465 1.0852 1.4389 35 1 6.0818 1.6500 -0.8098 36 1 5.8049 2.6796 0.6137 37 1 7.0632 4.1345 -0.9579 38 1 5.2466 6.2173 -3.1142 39 1 6.7538 5.9796 -2.1978 40 1 6.6958 4.1113 -4.3149 41 1 8.7965 4.7663 -5.8709 42 1 7.2891 5.0028 -6.7877 43 1 10.7662 8.6520 -9.8386 44 1 3.9878 3.8601 -3.6682 45 1 3.2960 4.5385 -2.1761 46 1 2.7394 2.1910 -2.1867 47 1 4.4108 1.7341 -2.6017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508194658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:01 Heat of formation + Delta-G solvation = -79.222105 kcal Electronic energy + Delta-G solvation = -26546.380104 eV Core-core repulsion = 22661.476383 eV Total energy + Delta-G solvation = -3884.903721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32484 -40.66571 -39.54423 -36.80517 -35.57209 -34.68187 -34.57034 -32.31704 -31.63477 -30.57861 -28.00861 -27.81367 -27.36199 -25.16741 -23.87273 -23.01894 -21.81364 -21.16114 -19.92931 -18.86983 -18.24602 -18.00457 -17.53724 -17.11752 -16.87555 -16.71841 -16.43646 -16.16618 -15.83784 -15.66009 -15.45827 -15.10620 -14.76710 -14.70457 -14.44082 -14.16835 -13.99517 -13.92643 -13.57749 -13.26724 -13.17604 -13.16283 -13.11511 -13.07885 -12.88409 -12.68430 -12.59391 -12.54989 -11.87796 -11.74018 -11.53910 -11.14013 -11.06010 -10.77164 -10.27483 -10.14580 -10.12123 -9.93704 -9.26878 -8.66711 -8.34201 -6.12595 0.96832 1.30857 1.42921 1.49570 1.60027 1.60645 1.62277 2.15152 2.27474 2.45254 2.88847 2.99891 3.33412 3.53950 3.69469 3.80954 3.98959 4.04980 4.10163 4.20150 4.27635 4.30055 4.34540 4.45993 4.50304 4.50780 4.57755 4.61088 4.61888 4.72061 4.74168 4.82875 4.88356 4.95361 4.96013 5.09274 5.25760 5.35749 5.40483 5.42213 5.44969 5.88263 5.94972 6.08747 6.20228 6.50310 6.60330 7.06898 7.23203 7.30998 8.75066 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.001689 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.330215 B =16578.049274 C =16943.846858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.726 5.726 3 C 0.509 3.491 4 O -0.568 6.568 5 C 0.068 3.932 6 H 0.089 0.911 7 C -0.142 4.142 8 N -0.535 5.535 9 C 0.084 3.916 10 C -0.124 4.124 11 C -0.136 4.136 12 C 0.159 3.841 13 N -0.706 5.706 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 C -0.073 4.073 27 C 0.061 3.939 28 H 0.044 0.956 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.418 0.582 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.415 0.585 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.571 -26.742 22.163 38.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.379 5.379 3 C 0.295 3.705 4 O -0.445 6.445 5 C -0.044 4.044 6 H 0.106 0.894 7 C -0.199 4.199 8 N -0.261 5.261 9 C -0.042 4.042 10 C -0.144 4.144 11 C -0.137 4.137 12 C 0.036 3.964 13 N -0.360 5.360 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.279 4.279 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.110 4.110 27 C -0.067 4.067 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.255 0.745 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.252 0.748 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.210 -23.499 22.855 36.569 hybrid contribution 0.776 -2.282 -1.749 2.978 sum -15.433 -25.781 21.106 36.720 Atomic orbital electron populations 1.21615 0.79126 1.04078 1.01095 1.45795 1.08195 1.08716 1.75209 1.20980 0.90653 0.83622 0.75232 1.90719 1.70965 1.33122 1.49739 1.21667 0.90678 0.92821 0.99228 0.89352 1.21868 1.02991 1.03140 0.91922 1.62010 1.14286 1.35858 1.13929 1.21120 0.85773 0.95929 1.01359 1.22410 0.99670 0.96948 0.95342 1.20777 0.96683 0.97342 0.98859 1.20282 0.95699 0.95227 0.85187 1.45798 1.55132 1.11142 1.23937 1.20122 0.78053 0.85694 0.84260 1.90694 1.60923 1.19103 1.73889 1.23363 1.03470 1.03686 0.97380 1.85612 1.68812 1.11528 1.26629 1.23210 1.40143 0.96640 1.09427 0.89826 1.26146 0.95979 0.95580 1.01507 1.70193 1.40756 1.07307 1.36543 0.84938 0.77599 0.78442 0.76896 1.19352 1.20300 1.18096 1.20379 0.93779 0.96326 1.00543 1.22090 1.00467 0.96547 0.87549 0.93723 0.87118 0.93462 0.74531 0.93007 0.89596 0.89239 0.91115 0.87648 0.85793 0.92452 0.91740 0.74844 0.87079 0.87210 0.92003 0.90185 0.91612 0.91792 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.70 127.77 1.37 2.03 16 2 N -0.73 -5.83 5.71 -484.52 -2.77 -8.60 16 3 C 0.51 7.86 5.91 87.66 0.52 8.38 16 4 O -0.57 -14.95 16.11 -3.02 -0.05 -15.00 16 5 C 0.07 0.70 2.46 44.17 0.11 0.81 16 6 H 0.09 0.43 8.12 -2.39 -0.02 0.41 16 7 C -0.14 -0.98 8.61 71.98 0.62 -0.36 16 8 N -0.53 -8.11 4.25 -880.26 -3.74 -11.84 16 9 C 0.08 0.97 4.79 85.41 0.41 1.38 16 10 C -0.12 -1.93 9.50 26.68 0.25 -1.67 16 11 C -0.14 -2.57 5.26 -15.40 -0.08 -2.66 16 12 C 0.16 3.95 5.72 85.63 0.49 4.44 16 13 N -0.71 -18.64 5.55 -466.80 -2.59 -21.23 16 14 C 0.53 20.17 7.85 87.66 0.69 20.86 16 15 O -0.57 -27.19 15.86 -3.02 -0.05 -27.23 16 16 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 17 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.72 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 22 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 C -0.07 -1.38 6.04 29.75 0.18 -1.20 16 27 C 0.06 0.98 5.34 86.27 0.46 1.44 16 28 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.42 0.28 8.83 -92.71 -0.82 -0.54 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.09 0.33 6.45 -2.39 -0.02 0.32 16 35 H 0.07 0.55 8.12 -2.38 -0.02 0.53 16 36 H 0.11 0.98 6.56 -2.38 -0.02 0.96 16 37 H 0.12 1.79 7.81 -2.91 -0.02 1.77 16 38 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 39 H 0.06 1.71 7.85 -2.39 -0.02 1.69 16 40 H 0.41 8.17 8.46 -92.71 -0.78 7.38 16 41 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 42 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.20 6.72 -2.39 -0.02 1.18 16 47 H 0.05 0.68 8.09 -2.39 -0.02 0.66 16 Total: -1.00 -86.47 400.00 -2.09 -88.56 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.62 Total: 16.28 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.56 Total: -0.74 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -8.81 Total: -97.79 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.10 Total: -42.23 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -86.47 -2.09 -88.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508194658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.341 kcal (2) G-P(sol) polarization free energy of solvation -86.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds