Wall clock time and date at job start Wed Apr 1 2020 00:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47156 * 180.02562 * 8 6 5 10 10 C 1.76204 * 100.00151 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99845 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00054 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00100 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47220 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47248 * 120.00156 * 14 12 10 17 17 H 1.48501 * 109.47068 * 240.00173 * 14 12 10 18 18 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 19 19 C 1.34773 * 120.00358 * 274.99972 * 18 2 1 20 20 O 1.21287 * 119.99899 * 0.02562 * 19 18 2 21 21 C 1.50701 * 120.00419 * 179.97438 * 19 18 2 22 22 C 1.56245 * 116.68886 * 297.57890 * 21 19 18 23 23 C 1.55913 * 102.63559 * 199.96418 * 22 21 19 24 24 N 1.49522 * 105.39061 * 0.47486 * 23 22 21 25 25 C 1.49527 * 105.91889 * 287.96468 * 24 23 22 26 26 C 1.54652 * 105.28081 * 71.26699 * 25 24 23 27 27 C 1.50462 * 102.04014 * 34.37769 * 24 23 22 28 28 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 29 29 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 31 31 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 32 32 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 33 33 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 35 35 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 36 36 H 0.96999 * 120.00126 * 180.02562 * 13 12 10 37 37 H 0.97007 * 119.99919 * 95.00541 * 18 2 1 38 38 H 1.09003 * 110.66682 * 319.46868 * 22 21 19 39 39 H 1.08993 * 110.67038 * 82.61203 * 22 21 19 40 40 H 1.08994 * 110.87680 * 241.14688 * 23 22 21 41 41 H 1.09005 * 109.57773 * 119.11919 * 23 22 21 42 42 H 1.08997 * 110.27672 * 190.21584 * 25 24 23 43 43 H 1.08994 * 110.28235 * 312.31296 * 25 24 23 44 44 H 1.09002 * 110.67151 * 242.22473 * 26 25 24 45 45 H 1.09002 * 110.67396 * 119.08735 * 26 25 24 46 46 H 1.08997 * 111.91382 * 188.40623 * 27 24 23 47 47 H 1.08999 * 111.97242 * 62.21204 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 16 6.2785 -2.3902 -3.6081 10 6 8.0102 -2.3773 -3.2832 11 1 8.3865 -1.9239 -2.3780 12 6 8.8909 -2.9488 -4.1911 13 7 8.4325 -3.5000 -5.2950 14 14 10.7269 -2.9344 -3.8470 15 1 10.9821 -2.2582 -2.5497 16 1 11.2299 -4.3302 -3.7856 17 1 11.4282 -2.2028 -4.9324 18 7 2.0182 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8581 1.1585 2.4117 21 6 2.6487 -0.7286 3.5879 22 6 1.7729 -1.9060 4.1246 23 6 2.2538 -2.0432 5.6013 24 7 3.2956 -0.9855 5.7793 25 6 4.4899 -1.4527 5.0104 26 6 4.0977 -1.3092 3.5213 27 6 2.7722 0.1209 4.9042 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -0.1584 -2.1369 32 1 1.6054 -1.7198 -1.2950 33 1 3.9824 -0.4627 -0.4314 34 1 6.1094 -0.5380 -2.0852 35 1 5.9637 -2.0990 -1.2423 36 1 9.0480 -3.8997 -5.9293 37 1 2.2490 -1.6317 1.1528 38 1 0.7136 -1.6562 4.0641 39 1 1.9848 -2.8240 3.5764 40 1 2.6822 -3.0294 5.7802 41 1 1.4164 -1.8659 6.2761 42 1 5.3530 -0.8264 5.2358 43 1 4.7066 -2.4947 5.2453 44 1 4.1005 -2.2808 3.0273 45 1 4.7670 -0.6156 3.0122 46 1 3.4930 0.9317 4.7988 47 1 1.8035 0.4865 5.2447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533829886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:49 Heat of formation + Delta-G solvation = -55.800288 kcal Electronic energy + Delta-G solvation = -27531.417938 eV Core-core repulsion = 23647.529863 eV Total energy + Delta-G solvation = -3883.888075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56431 -39.80238 -38.97551 -36.52492 -33.78089 -32.46869 -32.10973 -31.12489 -30.43957 -29.41470 -28.49278 -26.09500 -25.43166 -23.58961 -23.00883 -21.31835 -21.16829 -20.42429 -19.82531 -17.98694 -17.40536 -16.85066 -16.54375 -16.32472 -16.03595 -15.79166 -15.31061 -15.01307 -14.84207 -14.69241 -14.10506 -13.81799 -13.53835 -13.29543 -13.26359 -13.08786 -12.98692 -12.90713 -12.66744 -12.60196 -12.30814 -12.14594 -11.90508 -11.87203 -11.72294 -11.37315 -11.13582 -11.10210 -11.06172 -10.79184 -10.77262 -10.16276 -9.85247 -9.58815 -9.51140 -9.45984 -9.12245 -9.02236 -8.28517 -6.54880 -6.25844 -3.96756 2.16791 2.65250 2.96097 3.00969 3.18730 3.25254 3.29496 3.35031 3.63743 3.94208 3.99608 4.16367 4.25075 4.35344 4.50026 4.52441 4.63172 4.74178 4.78746 4.90218 5.01155 5.07654 5.07828 5.09617 5.14804 5.25456 5.27777 5.32864 5.36410 5.40312 5.46886 5.49739 5.52969 5.61350 5.62406 5.69361 5.81653 5.84531 6.01411 6.06995 6.08303 6.17716 6.46843 7.07591 7.55609 7.57987 7.81415 8.31370 8.50528 9.19793 10.81628 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.002545 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.534647 B =11001.204808 C =12833.331168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.722 5.722 19 C 0.554 3.446 20 O -0.532 6.532 21 C -0.135 4.135 22 C -0.134 4.134 23 C 0.013 3.987 24 N -0.466 5.466 25 C 0.013 3.987 26 C -0.137 4.137 27 C 0.041 3.959 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.403 0.597 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.920 4.520 21.286 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.374 5.374 19 C 0.339 3.661 20 O -0.408 6.408 21 C -0.139 4.139 22 C -0.173 4.173 23 C -0.117 4.117 24 N -0.185 5.185 25 C -0.116 4.116 26 C -0.176 4.176 27 C -0.088 4.088 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.945 4.673 20.304 26.236 hybrid contribution 2.031 -0.076 0.633 2.128 sum -13.914 4.597 20.937 25.556 Atomic orbital electron populations 1.22101 0.93938 1.02709 1.03148 1.21282 0.95035 0.97878 0.83208 0.88559 1.21614 0.81178 1.01319 0.97039 1.45996 1.06764 1.62089 1.24672 1.20328 0.89542 0.76724 0.81591 1.90713 1.69859 1.45946 1.32394 1.23529 0.93457 1.05727 1.07696 1.85406 1.04706 1.72985 1.20210 1.22898 0.91465 1.44285 1.09700 0.90885 1.24996 0.99633 0.94529 0.94437 1.70024 1.35357 1.35507 1.09374 0.86113 0.82929 0.78007 0.78431 1.19605 1.20543 1.20541 1.46120 1.67417 1.14381 1.09483 1.19450 0.76890 0.86526 0.83204 1.90730 1.49543 1.15674 1.84808 1.23814 0.97585 0.97521 0.95028 1.23423 0.99725 0.96876 0.97292 1.23839 0.96260 0.96642 0.94909 1.69995 1.03600 1.05136 1.39795 1.23620 0.95408 1.01899 0.90699 1.23236 0.93716 1.01798 0.98805 1.24344 1.01862 0.94926 0.87716 0.90952 0.91993 0.91624 0.89871 0.90905 0.76791 0.89232 0.89301 0.92201 0.76198 0.90513 0.90433 0.89982 0.89745 0.89440 0.90039 0.90180 0.90354 0.88921 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.13 1.07 2.73 -67.93 -0.19 0.88 16 3 H 0.10 0.92 7.58 -51.93 -0.39 0.53 16 4 C 0.11 1.13 5.23 -4.04 -0.02 1.11 16 5 N -0.74 -8.91 5.39 -60.29 -0.32 -9.23 16 6 C 0.53 9.32 7.85 -10.99 -0.09 9.23 16 7 O -0.52 -11.12 15.86 5.56 0.09 -11.03 16 8 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 14 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 N -0.72 -5.40 4.52 -53.81 -0.24 -5.64 16 19 C 0.55 5.05 7.25 -10.99 -0.08 4.97 16 20 O -0.53 -6.75 16.23 5.55 0.09 -6.66 16 21 C -0.13 -0.97 1.37 -149.93 -0.20 -1.18 16 22 C -0.13 -0.77 6.13 -23.43 -0.14 -0.91 16 23 C 0.01 0.07 6.64 -0.80 -0.01 0.07 16 24 N -0.47 -3.56 6.94 -221.24 -1.54 -5.10 16 25 C 0.01 0.08 6.61 -1.49 -0.01 0.07 16 26 C -0.14 -0.89 6.04 -24.12 -0.15 -1.04 16 27 C 0.04 0.33 6.05 0.43 0.00 0.33 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 4.01 8.14 -40.82 -0.33 3.67 16 34 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 35 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.40 2.54 8.60 -40.82 -0.35 2.19 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 40 H 0.08 0.43 7.69 -51.93 -0.40 0.03 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.48 7.69 -51.93 -0.40 0.08 16 44 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -34.94 397.54 -10.28 -45.22 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.73 Total: 1.98 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.11 Total: -2.74 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.37 Total: -45.06 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.18 Total: -17.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.94 -10.28 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533829886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.583 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds